BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0011.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774409.1| ABC transporter substrate-binding protein [Brad... 399 e-109 ref|YP_534671.1| periplasmic solute binding protein [Rhodopseudo... 398 e-109 ref|YP_488151.1| periplasmic solute binding protein [Rhodopseudo... 398 e-109 ref|ZP_08628547.1| zinc ABC transporter periplasmic-binding prot... 394 e-107 ref|YP_578616.1| periplasmic solute binding protein [Nitrobacter... 390 e-106 >ref|NP_774409.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53034.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 290 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/273 (71%), Positives = 220/273 (80%) Query: 16 SGPARAAERINVVASFSILADMVRNVGGNNVDVTALVGPDGDAHVYAPTPADARKVADAK 75 + P AAER+NVVASFSIL D VRNVGG+ V VT LVGPD D HVY P P+DA+++ADAK Sbjct: 16 ASPLHAAERLNVVASFSILGDFVRNVGGDRVSVTTLVGPDSDVHVYTPAPSDAKRIADAK 75 Query: 76 LVVINGLGFEGWMPRLLQASGSKALVAVATKGIMPRKMGGHDDPHAWQSVANAKIYVVNI 135 VV+NGLG EGW+PRL+Q+SGSKA V A+ GI P K+G DPHAWQSV NAK+YV +I Sbjct: 76 FVVVNGLGLEGWLPRLVQSSGSKATVVTASAGIAPLKLGSAADPHAWQSVPNAKVYVTDI 135 Query: 136 RDGLIAAAPDQAAIFKANADAYLAKLEALDREVHEAVAKVPEARRKVISTHGAFGYFADA 195 + L AA P+ A F+A A AYL KLE LDREV EAVAK+P RRKVISTH AFGYFA Sbjct: 136 ANALAAADPEDAEFFRAQAKAYLEKLETLDREVREAVAKIPPERRKVISTHDAFGYFAAE 195 Query: 196 YGVTFFSPLSVSTDSEPSARDIAAIIAQIKLAKIPAVFLENISDPRLIERIAAETGARVG 255 YG+ F +PL VST++EPSARDIAAII QIK KIPAVFLENISD RLI RIAAETGA+VG Sbjct: 196 YGIQFIAPLGVSTETEPSARDIAAIIGQIKGQKIPAVFLENISDDRLIRRIAAETGAKVG 255 Query: 256 GTLYSDGLTAEKGDAPTYIDMVRHNIKALTSAL 288 GTL SDGLT EKG APTYIDMVRHNIKALTSAL Sbjct: 256 GTLISDGLTGEKGSAPTYIDMVRHNIKALTSAL 288 >ref|YP_534671.1| periplasmic solute binding protein [Rhodopseudomonas palustris BisB18] gb|ABD90352.1| periplasmic solute binding protein [Rhodopseudomonas palustris BisB18] Length = 294 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/291 (68%), Positives = 232/291 (79%), Gaps = 3/291 (1%) Query: 1 MRRLF---GLIGLALLLASGPARAAERINVVASFSILADMVRNVGGNNVDVTALVGPDGD 57 MRR + L+ AL A A A +RI+VVASFSILAD VRNVGG+ V V LVGP GD Sbjct: 1 MRRFWQTASLVFTALTAAIPAAHAQDRIDVVASFSILADFVRNVGGDRVQVATLVGPGGD 60 Query: 58 AHVYAPTPADARKVADAKLVVINGLGFEGWMPRLLQASGSKALVAVATKGIMPRKMGGHD 117 AHVY PTPADA+K+ AKLV+INGLGFEGW+PRL+++SG KA VA AT GI PRK+ GH Sbjct: 61 AHVYTPTPADAKKITAAKLVIINGLGFEGWLPRLVKSSGGKAQVATATTGITPRKLEGHA 120 Query: 118 DPHAWQSVANAKIYVVNIRDGLIAAAPDQAAIFKANADAYLAKLEALDREVHEAVAKVPE 177 DPHAWQSV NAKIYV NIRD L A P A ++ANA++YLAKL+ALD E+ AVAK+P Sbjct: 121 DPHAWQSVPNAKIYVANIRDALSGADPAGADTYRANAESYLAKLDALDGEIRAAVAKIPS 180 Query: 178 ARRKVISTHGAFGYFADAYGVTFFSPLSVSTDSEPSARDIAAIIAQIKLAKIPAVFLENI 237 RRKVISTH AFGYFA+AYG+ F +P VST+SE SA+DIA II Q+K K+PAVFLE+I Sbjct: 181 ERRKVISTHDAFGYFAEAYGIAFIAPQGVSTESEISAKDIARIIKQVKAEKLPAVFLESI 240 Query: 238 SDPRLIERIAAETGARVGGTLYSDGLTAEKGDAPTYIDMVRHNIKALTSAL 288 SDPRL+ RIAAETGA+VGG+LYSD LT EKG+APTYIDMVR+NIK LTSAL Sbjct: 241 SDPRLMRRIAAETGAKVGGSLYSDSLTDEKGEAPTYIDMVRYNIKTLTSAL 291 >ref|YP_488151.1| periplasmic solute binding protein [Rhodopseudomonas palustris HaA2] gb|ABD09240.1| Periplasmic solute binding protein [Rhodopseudomonas palustris HaA2] Length = 304 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/293 (67%), Positives = 233/293 (79%), Gaps = 12/293 (4%) Query: 10 LALLLASGPARAAERINVVASFSILADMVRNVGGNNVDVTALVGPDGDAHVYAPTPADAR 69 ++LL+A+ PARA ERI VVASFSIL D VRNVGG+ V VT LVGP GD HVY P+P DA+ Sbjct: 12 VSLLVAALPARAQERIGVVASFSILGDFVRNVGGDRVAVTTLVGPTGDVHVYTPSPRDAK 71 Query: 70 KVADAKLVVINGLGFEGWMPRLLQASGSKALVAVATKGIMPRK------------MGGHD 117 +VADA+LVV+NGLG EGW+PRL+Q+SG KA + ATKGI R H Sbjct: 72 QVADARLVVVNGLGLEGWLPRLVQSSGGKATIVTATKGIKTRDADEGDSHGHSHGKDEHA 131 Query: 118 DPHAWQSVANAKIYVVNIRDGLIAAAPDQAAIFKANADAYLAKLEALDREVHEAVAKVPE 177 DPHAWQSVANAKIY+ NIR LIAA P A+++ANA+AYL KL+ALDREV + AK+P Sbjct: 132 DPHAWQSVANAKIYMSNIRAALIAADPAGEAVYRANAEAYLGKLDALDREVRDEAAKIPP 191 Query: 178 ARRKVISTHGAFGYFADAYGVTFFSPLSVSTDSEPSARDIAAIIAQIKLAKIPAVFLENI 237 A RKVIS+H AFGYFADAYG+TF +P VST+SE SARD+A II QI+ +KIPAVFLENI Sbjct: 192 AARKVISSHDAFGYFADAYGITFIAPQGVSTESEVSARDVARIIKQIRASKIPAVFLENI 251 Query: 238 SDPRLIERIAAETGARVGGTLYSDGLTAEKGDAPTYIDMVRHNIKALTSALAE 290 SDPRLI+RIAAETGA++GGTLYSD LTAE GDAPTYIDMVRHNI+ LTSALA+ Sbjct: 252 SDPRLIQRIAAETGAKIGGTLYSDSLTAENGDAPTYIDMVRHNIRTLTSALAD 304 >ref|ZP_08628547.1| zinc ABC transporter periplasmic-binding protein ZnuA [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08760.1| zinc ABC transporter periplasmic-binding protein ZnuA [Bradyrhizobiaceae bacterium SG-6C] Length = 301 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/300 (66%), Positives = 229/300 (76%), Gaps = 10/300 (3%) Query: 1 MRRLFGLIGLALLLASGPARAAER---INVVASFSILADMVRNVGGNNVDVTALVGPDGD 57 M R G+I L+ G A A +NVVA+FSIL D +NVGG+ V VT LVGPD D Sbjct: 1 MLRFIGIIACVFTLSFGSASAQNANAPLNVVATFSILGDFAKNVGGDRVSVTTLVGPDSD 60 Query: 58 AHVYAPTPADARKVADAKLVVINGLGFEGWMPRLLQASGSKALVAVATKGIMPRKM-GGH 116 HVY PTPADA+K+ADAKLV++NGLG EGW+PRL+++SG KA+ VATKGI RK+ GH Sbjct: 61 THVYTPTPADAKKIADAKLVIVNGLGLEGWLPRLVKSSGGKAVTVVATKGIAARKIEDGH 120 Query: 117 D------DPHAWQSVANAKIYVVNIRDGLIAAAPDQAAIFKANADAYLAKLEALDREVHE 170 DPHAWQSV NAKIYV NIR+ LIAA P A +KANA YLA L+ LDRE+ E Sbjct: 121 SHDPSDADPHAWQSVPNAKIYVANIREALIAADPAGADAYKANAAVYLANLDMLDREIRE 180 Query: 171 AVAKVPEARRKVISTHGAFGYFADAYGVTFFSPLSVSTDSEPSARDIAAIIAQIKLAKIP 230 AVAK+P RR VISTH AFGYF AYG+ F +P VST+SEPSARDIAAII+QIK KIP Sbjct: 181 AVAKIPPERRSVISTHNAFGYFGAAYGIKFIAPQGVSTESEPSARDIAAIISQIKKQKIP 240 Query: 231 AVFLENISDPRLIERIAAETGARVGGTLYSDGLTAEKGDAPTYIDMVRHNIKALTSALAE 290 AVFLEN+SDPRL+ RIAAETGA +GGTLYSD LT EKG APTYIDMVRHNIKALTSAL++ Sbjct: 241 AVFLENVSDPRLMRRIAAETGANIGGTLYSDSLTGEKGPAPTYIDMVRHNIKALTSALSQ 300 >ref|YP_578616.1| periplasmic solute binding protein [Nitrobacter hamburgensis X14] gb|ABE64156.1| periplasmic solute binding protein [Nitrobacter hamburgensis X14] Length = 313 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/304 (66%), Positives = 233/304 (76%), Gaps = 16/304 (5%) Query: 3 RLFGLIGLALLLAS-GPARAA----ERINVVASFSILADMVRNVGGNNVDVTALVGPDGD 57 RL G +A++LA+ PARA +RI+VVASFSIL D R VGG VDVT LVG DGD Sbjct: 10 RLLGFWLIAMVLAALVPARAQSHNDDRIDVVASFSILGDFARAVGGVRVDVTTLVGTDGD 69 Query: 58 AHVYAPTPADARKVADAKLVVINGLGFEGWMPRLLQASGSKALVAVATKGIMP------R 111 HV+ P PADARK+A AKLV++NGLG EGW+PRL+QASG KA + VAT G+ Sbjct: 70 VHVFTPAPADARKIAAAKLVIVNGLGLEGWLPRLVQASGGKAAIVVATTGVPSLGIAAGE 129 Query: 112 KMGGHD-----DPHAWQSVANAKIYVVNIRDGLIAAAPDQAAIFKANADAYLAKLEALDR 166 G H DPHAWQSVANAKIYV NIRD LIAA P A+++ANA AYL KL+ALDR Sbjct: 130 TSGTHHGDDSADPHAWQSVANAKIYVANIRDALIAADPAGEAVYRANAAAYLVKLDALDR 189 Query: 167 EVHEAVAKVPEARRKVISTHGAFGYFADAYGVTFFSPLSVSTDSEPSARDIAAIIAQIKL 226 EV EAVA++P ARRKVISTH AF YF AYG+ F +P VSTDSEPSARDIAA + QI+ Sbjct: 190 EVREAVARIPLARRKVISTHNAFSYFEAAYGIAFIAPQGVSTDSEPSARDIAATVTQIRT 249 Query: 227 AKIPAVFLENISDPRLIERIAAETGARVGGTLYSDGLTAEKGDAPTYIDMVRHNIKALTS 286 AKIPA+FLEN+SDPRLI +IAAE+GAR+GGTLYSD L+ EKGDAPTYIDMVRHNIKALTS Sbjct: 250 AKIPAIFLENLSDPRLIRQIAAESGARIGGTLYSDSLSDEKGDAPTYIDMVRHNIKALTS 309 Query: 287 ALAE 290 AL E Sbjct: 310 ALTE 313