BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0005.p (183 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241432.1| tartrate utilization transcriptional regulat... 269 1e-70 ref|NP_773208.1| transcriptional regulator [Bradyrhizobium japon... 268 2e-70 ref|YP_001207007.1| tartrate utilization transcriptional regulat... 267 5e-70 ref|YP_534473.1| LysR family transcriptional regulator [Rhodopse... 241 2e-62 ref|ZP_00054290.2| COG0583: Transcriptional regulator [Magnetosp... 238 4e-61 >ref|YP_001241432.1| tartrate utilization transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ37526.1| Transcriptional regulator ttuA (Tartrate utilization transcriptional regulator) [Bradyrhizobium sp. BTAi1] Length = 305 Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 133/183 (72%), Positives = 156/183 (85%) Query: 1 VQLLEEKTIRLLPKLLSGALDLAFVRPPERPDRRIEFVPLLQETAVVALSHKHGLARRKQ 60 VQL+EEKTIRLLPK+LSGALDLAFVRPPER D R+EF LL E+AVVAL +H LA R Sbjct: 123 VQLMEEKTIRLLPKILSGALDLAFVRPPERTDPRLEFRALLSESAVVALPQRHRLAGRAS 182 Query: 61 IVLPDIADQPLIVPERRSRPHSHDLTTKLFDEAGLTPRIQEIADEKQTIVNMVAARLGVA 120 + L DIADQPLIVP+RRSRPHSHDLT KLF +AGL+P + + ADEKQTIV++VAARLG+A Sbjct: 183 VSLADIADQPLIVPDRRSRPHSHDLTMKLFAQAGLSPDVAQFADEKQTIVHLVAARLGIA 242 Query: 121 IVPRWTARMAIPGVRFVPLRLKRGSSAGRLPLAAAWLKGSRDPVRDQVIAVLQARLKSYA 180 IVPRWT+R+A+ GVRFVPLRL+RG +AGRLPLAAAWL+GSRDP R+ ++ VL ARL YA Sbjct: 243 IVPRWTSRLAVSGVRFVPLRLQRGGTAGRLPLAAAWLRGSRDPAREAMLGVLDARLAKYA 302 Query: 181 REA 183 R A Sbjct: 303 RGA 305 >ref|NP_773208.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51833.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 305 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 129/183 (70%), Positives = 157/183 (85%) Query: 1 VQLLEEKTIRLLPKLLSGALDLAFVRPPERPDRRIEFVPLLQETAVVALSHKHGLARRKQ 60 VQLLE+KT+RLLPK+L+GALDLAFVRPP+ D+R+EF LLQETA+VA +H LA RK Sbjct: 123 VQLLEDKTVRLLPKILTGALDLAFVRPPDSADKRLEFRDLLQETAIVAFPQRHALAERKS 182 Query: 61 IVLPDIADQPLIVPERRSRPHSHDLTTKLFDEAGLTPRIQEIADEKQTIVNMVAARLGVA 120 I L IAD+ ++VP+RRSRPHSHDLT KLF++AGLTPRI ++ADEKQTI+++VA +LGVA Sbjct: 183 ITLAQIADEAMLVPDRRSRPHSHDLTIKLFEQAGLTPRIVQVADEKQTIIHLVATKLGVA 242 Query: 121 IVPRWTARMAIPGVRFVPLRLKRGSSAGRLPLAAAWLKGSRDPVRDQVIAVLQARLKSYA 180 IVPRWT RMA+ GVRFVPLR K+ GRLPLAAAWL+GSRDP RD ++AVL+ARL+SYA Sbjct: 243 IVPRWTTRMAVSGVRFVPLRPKQSGPVGRLPLAAAWLRGSRDPARDAMLAVLEARLRSYA 302 Query: 181 REA 183 REA Sbjct: 303 REA 305 >ref|YP_001207007.1| tartrate utilization transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL78790.1| Transcriptional regulator ttuA (Tartrate utilization transcriptional regulator) [Bradyrhizobium sp. ORS 278] Length = 305 Score = 267 bits (682), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 131/183 (71%), Positives = 156/183 (85%) Query: 1 VQLLEEKTIRLLPKLLSGALDLAFVRPPERPDRRIEFVPLLQETAVVALSHKHGLARRKQ 60 VQ+LEEKT+RLLPK+LSGALDLAFVRPPER D R+EF LL E+AVVAL +H LA R Sbjct: 123 VQILEEKTLRLLPKILSGALDLAFVRPPERSDVRLEFRALLSESAVVALPQRHRLAARAS 182 Query: 61 IVLPDIADQPLIVPERRSRPHSHDLTTKLFDEAGLTPRIQEIADEKQTIVNMVAARLGVA 120 + L DI ++PLIVP+RRSRPHSHDLT KLF +AGL+P + ++ADEKQTIV++VAARLG+A Sbjct: 183 VSLSDITEEPLIVPDRRSRPHSHDLTMKLFAQAGLSPDVAQVADEKQTIVHLVAARLGIA 242 Query: 121 IVPRWTARMAIPGVRFVPLRLKRGSSAGRLPLAAAWLKGSRDPVRDQVIAVLQARLKSYA 180 IVPRWT+R+AI GVRFVPLRLKRGS+AGRLPLAAAWL GSRDP R+ ++ VL+ RL YA Sbjct: 243 IVPRWTSRLAISGVRFVPLRLKRGSTAGRLPLAAAWLNGSRDPAREAMLGVLERRLAKYA 302 Query: 181 REA 183 R A Sbjct: 303 RGA 305 >ref|YP_534473.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD90154.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 301 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 122/183 (66%), Positives = 148/183 (80%), Gaps = 3/183 (1%) Query: 1 VQLLEEKTIRLLPKLLSGALDLAFVRPPERPDRRIEFVPLLQETAVVALSHKHGLARRKQ 60 VQL+E+KTIRLLP+LLSG LDLA VRPPE PD+R+E + LL ETAVVA+S +H LA RK+ Sbjct: 122 VQLIEDKTIRLLPRLLSGRLDLAIVRPPEHPDKRLELLFLLHETAVVAVSDRHPLAARKR 181 Query: 61 IVLPDIADQPLIVPERRSRPHSHDLTTKLFDEAGLTPRIQEIADEKQTIVNMVAARLGVA 120 + + D+A+Q LIVP+RRSRPHSHDLT KLF EAGL P I +IADEKQTIVN+V+A LGVA Sbjct: 182 VTIADLAEQRLIVPDRRSRPHSHDLTAKLFAEAGLEPHIAQIADEKQTIVNLVSAELGVA 241 Query: 121 IVPRWTARMAIPGVRFVPLRLKRGSSAGRLPLAAAWLKGSRDPVRDQVIAVLQARLKSYA 180 IVP+WT+RMA GVR+V L S RLPLAAAW +G+RDP+RD+++ LQARL Y Sbjct: 242 IVPKWTSRMATRGVRYVRL---ATSDMNRLPLAAAWTRGTRDPMRDEMLQTLQARLAHYG 298 Query: 181 REA 183 REA Sbjct: 299 REA 301 >ref|ZP_00054290.2| COG0583: Transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 304 Score = 238 bits (606), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 111/180 (61%), Positives = 144/180 (80%) Query: 1 VQLLEEKTIRLLPKLLSGALDLAFVRPPERPDRRIEFVPLLQETAVVALSHKHGLARRKQ 60 +QL+E+K+IRLLP+LLSG +DLA VRPPE PD+ IE + L ETAVVA+ H LA + Sbjct: 122 IQLVEDKSIRLLPRLLSGRIDLALVRPPEHPDKSIELLFLFHETAVVAVPEHHSLAEYDK 181 Query: 61 IVLPDIADQPLIVPERRSRPHSHDLTTKLFDEAGLTPRIQEIADEKQTIVNMVAARLGVA 120 + + D+ADQPLIVPERRSRPHSHDLT KLF EAGL R+ ++A+EKQTIVN+VAA +GVA Sbjct: 182 VTVQDLADQPLIVPERRSRPHSHDLTMKLFAEAGLQARVAQLAEEKQTIVNLVAANIGVA 241 Query: 121 IVPRWTARMAIPGVRFVPLRLKRGSSAGRLPLAAAWLKGSRDPVRDQVIAVLQARLKSYA 180 IVPRWT+RMA+ GVR++PL + G +LPLAAAW++G+RDP+RD+++ L+ RL YA Sbjct: 242 IVPRWTSRMAVTGVRYIPLEVTAGGGMNKLPLAAAWVRGTRDPIRDEMLETLRERLGIYA 301