BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0016.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_486162.1| binding-protein dependent transport system inne... 549 e-154 ref|YP_001205807.1| putative permease of sugar ABC transporter [... 533 e-149 ref|YP_570038.1| binding-protein-dependent transport systems inn... 531 e-149 ref|YP_001240087.1| putative permease of sugar ABC transporter [... 527 e-148 ref|ZP_02189238.1| binding-protein-dependent transport systems i... 480 e-133 >ref|YP_486162.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD07251.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 312 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 263/312 (84%), Positives = 287/312 (91%) Query: 1 MVDVAFQSNRAAAAQTGRRRAGLRNALRRKSMAAFLMTLPLILLIAILVLYPALYSLHLA 60 MVD+ +Q R AAA T RRR GL ++RKSM AFLM LPLI+LI +LV+YPA Y++HLA Sbjct: 1 MVDIPYQPGRVAAASTRRRRGGLAAMMKRKSMVAFLMALPLIVLIGVLVIYPAFYAVHLA 60 Query: 61 TLNKAMTKFVGFGNFEFLFKRDTFWLVVKQSCIFAISAVIFKALIGFIVAHFVHNVPANK 120 TLNK+M +FVGF NF FLFKRDTFWLVV+QSCIFAI+AV+FKAL+GFIVAHFVHNVPA Sbjct: 61 TLNKSMQRFVGFDNFLFLFKRDTFWLVVQQSCIFAITAVVFKALLGFIVAHFVHNVPAKG 120 Query: 121 QRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYSAFNYTLSFFGIGPIPWTGDAMWARFSVI 180 QRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYSAFNYTL FG GPIPWTGDA WARFSVI Sbjct: 121 QRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYSAFNYTLGLFGAGPIPWTGDASWARFSVI 180 Query: 181 LVNVWYGAPFFMIMYLAALKSVPDQLYEAAAIDGANWWQRIWYVTLPMMRNIIAITTLFS 240 LVN+WYGAPFFMIMYLAALKSVP+QLYEAA+IDGANWWQ++WYVTLPMMRNIIAITTLFS Sbjct: 181 LVNIWYGAPFFMIMYLAALKSVPEQLYEAASIDGANWWQKLWYVTLPMMRNIIAITTLFS 240 Query: 241 LIVTFANFDIVRILTAGGPLDHTHIFATWAFRVGIEGSDVPLGASVSLFMVPILAVAAIF 300 LIVTFANFDIVRILTAGGPLDHTHIFATWAFR+GIEGSD+PLGASVSLFM+PIL VAAIF Sbjct: 241 LIVTFANFDIVRILTAGGPLDHTHIFATWAFRIGIEGSDIPLGASVSLFMLPILGVAAIF 300 Query: 301 ILRDITKRGNEA 312 ILRDI KRGNE+ Sbjct: 301 ILRDINKRGNES 312 >ref|YP_001205807.1| putative permease of sugar ABC transporter [Bradyrhizobium sp. ORS 278] emb|CAL77582.1| putative permease protein of sugar ABC transporter [Bradyrhizobium sp. ORS 278] Length = 312 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 268/312 (85%), Positives = 289/312 (92%) Query: 1 MVDVAFQSNRAAAAQTGRRRAGLRNALRRKSMAAFLMTLPLILLIAILVLYPALYSLHLA 60 MVD A N AA + RR GLRNAL+RKS AFLMTLPLILLIA+LVLYPA YS+HLA Sbjct: 1 MVDAAIGENAAARPRPIARRKGLRNALKRKSTVAFLMTLPLILLIAVLVLYPAFYSIHLA 60 Query: 61 TLNKAMTKFVGFGNFEFLFKRDTFWLVVKQSCIFAISAVIFKALIGFIVAHFVHNVPANK 120 TLNK+M +FVGFGNF FLFKR+TFW+VVKQSCIFAI+AVIFKAL+GFIVAHFVHN+PA Sbjct: 61 TLNKSMQRFVGFGNFTFLFKRETFWMVVKQSCIFAITAVIFKALMGFIVAHFVHNIPAKG 120 Query: 121 QRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYSAFNYTLSFFGIGPIPWTGDAMWARFSVI 180 QRKWRG+LLVPWVIPPAMSTLAWLWLFDPSYSAFNYTLSFFGIGPIPW G+ WARFSVI Sbjct: 121 QRKWRGILLVPWVIPPAMSTLAWLWLFDPSYSAFNYTLSFFGIGPIPWLGETAWARFSVI 180 Query: 181 LVNVWYGAPFFMIMYLAALKSVPDQLYEAAAIDGANWWQRIWYVTLPMMRNIIAITTLFS 240 LVNVWYGAPFFMIMYLAALKSVPDQLYEAAAIDGANWWQRIWYVTLPMMRNIIAITTLFS Sbjct: 181 LVNVWYGAPFFMIMYLAALKSVPDQLYEAAAIDGANWWQRIWYVTLPMMRNIIAITTLFS 240 Query: 241 LIVTFANFDIVRILTAGGPLDHTHIFATWAFRVGIEGSDVPLGASVSLFMVPILAVAAIF 300 LIVTFANFDIVRILT+GGPLD TH+FATWAF+VGI+ SD+PLGASVSLFMVPILAVAAIF Sbjct: 241 LIVTFANFDIVRILTSGGPLDTTHLFATWAFQVGIQSSDIPLGASVSLFMVPILAVAAIF 300 Query: 301 ILRDITKRGNEA 312 ILRD++KRGNE+ Sbjct: 301 ILRDVSKRGNES 312 >ref|YP_570038.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] gb|ABE40137.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] Length = 348 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 262/312 (83%), Positives = 288/312 (92%) Query: 1 MVDVAFQSNRAAAAQTGRRRAGLRNALRRKSMAAFLMTLPLILLIAILVLYPALYSLHLA 60 MVD+ +Q R AAA T R+R+GL + RKS AFLM LPL++LI +LV+YPALY++HL+ Sbjct: 37 MVDIPYQPGRVAAASTRRKRSGLAAMMHRKSTIAFLMALPLLVLIGVLVVYPALYAIHLS 96 Query: 61 TLNKAMTKFVGFGNFEFLFKRDTFWLVVKQSCIFAISAVIFKALIGFIVAHFVHNVPANK 120 TLNK M +FVGFGNF+FLFKRDTFWLVV+QSC+FAI+AV FKAL+GFIVAHFVHNVPA Sbjct: 97 TLNKTMQRFVGFGNFQFLFKRDTFWLVVQQSCLFAITAVFFKALLGFIVAHFVHNVPAKG 156 Query: 121 QRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYSAFNYTLSFFGIGPIPWTGDAMWARFSVI 180 QRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYSAFNYTL FG GPIPWTGDA WARFSVI Sbjct: 157 QRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYSAFNYTLGLFGAGPIPWTGDAAWARFSVI 216 Query: 181 LVNVWYGAPFFMIMYLAALKSVPDQLYEAAAIDGANWWQRIWYVTLPMMRNIIAITTLFS 240 LVN+WYGAPFFMIMYLAALKSVP+QLYEAA+IDGANWWQR+WYVTLPMMRNIIAITTLFS Sbjct: 217 LVNIWYGAPFFMIMYLAALKSVPEQLYEAASIDGANWWQRLWYVTLPMMRNIIAITTLFS 276 Query: 241 LIVTFANFDIVRILTAGGPLDHTHIFATWAFRVGIEGSDVPLGASVSLFMVPILAVAAIF 300 LIVTFANFDIVRILTAGGPLDHTHIFATWAFR+GIEGSD+PLGASVSLFM+PILAVAAIF Sbjct: 277 LIVTFANFDIVRILTAGGPLDHTHIFATWAFRIGIEGSDIPLGASVSLFMLPILAVAAIF 336 Query: 301 ILRDITKRGNEA 312 ILRDI KRGNE+ Sbjct: 337 ILRDINKRGNES 348 >ref|YP_001240087.1| putative permease of sugar ABC transporter [Bradyrhizobium sp. BTAi1] gb|ABQ36181.1| carbohydrate ABC transporter membrane protein 1, CUT1 family [Bradyrhizobium sp. BTAi1] Length = 312 Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust. Identities = 270/312 (86%), Positives = 290/312 (92%) Query: 1 MVDVAFQSNRAAAAQTGRRRAGLRNALRRKSMAAFLMTLPLILLIAILVLYPALYSLHLA 60 MVD A + A + R GLR+AL+RKS AFL+TLPLILLI +LV+YPA YS+HLA Sbjct: 1 MVDAAIGEDTVARPRRAATRRGLRHALKRKSTVAFLLTLPLILLITLLVVYPAAYSVHLA 60 Query: 61 TLNKAMTKFVGFGNFEFLFKRDTFWLVVKQSCIFAISAVIFKALIGFIVAHFVHNVPANK 120 TLNK+M +FVGFGNFEFLFKRDTFWLVVKQSCIFAI+AV+FKALIGFIVAHFVHN+PA Sbjct: 61 TLNKSMQRFVGFGNFEFLFKRDTFWLVVKQSCIFAITAVVFKALIGFIVAHFVHNIPAKG 120 Query: 121 QRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYSAFNYTLSFFGIGPIPWTGDAMWARFSVI 180 QRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYSAFNYTL+FFGIGPIPWTGDA WARFSVI Sbjct: 121 QRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYSAFNYTLAFFGIGPIPWTGDAAWARFSVI 180 Query: 181 LVNVWYGAPFFMIMYLAALKSVPDQLYEAAAIDGANWWQRIWYVTLPMMRNIIAITTLFS 240 LVNVWYGAPFFMIMYLAALKSVP+QLYEAAAIDGANWWQRIW+VTLPMMRNIIAITTLFS Sbjct: 181 LVNVWYGAPFFMIMYLAALKSVPEQLYEAAAIDGANWWQRIWFVTLPMMRNIIAITTLFS 240 Query: 241 LIVTFANFDIVRILTAGGPLDHTHIFATWAFRVGIEGSDVPLGASVSLFMVPILAVAAIF 300 LIVTFANFDIVRILTAGGPLD THIFATWAFRVGIEGSD+PLGASVSLFMVPILAVAAIF Sbjct: 241 LIVTFANFDIVRILTAGGPLDKTHIFATWAFRVGIEGSDIPLGASVSLFMVPILAVAAIF 300 Query: 301 ILRDITKRGNEA 312 ILRD++KRGNE+ Sbjct: 301 ILRDVSKRGNES 312 >ref|ZP_02189238.1| binding-protein-dependent transport systems inner membrane component [alpha proteobacterium BAL199] gb|EDP64197.1| binding-protein-dependent transport systems inner membrane component [alpha proteobacterium BAL199] Length = 313 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 231/313 (73%), Positives = 267/313 (85%), Gaps = 1/313 (0%) Query: 1 MVDVAFQSNRAAAAQTG-RRRAGLRNALRRKSMAAFLMTLPLILLIAILVLYPALYSLHL 59 MVD +S A + R+ L+ ++RKS AFL+TLPLIL++A LV+YPA Y++HL Sbjct: 1 MVDTVTKSGGADVSSVNPHHRSSLKKLMQRKSTIAFLLTLPLILIVASLVIYPAFYAIHL 60 Query: 60 ATLNKAMTKFVGFGNFEFLFKRDTFWLVVKQSCIFAISAVIFKALIGFIVAHFVHNVPAN 119 ATLNK+M +FVGFGNF FLFKR+ FW+VV QSCIFAISAV FKALIGF VAHFVH +P Sbjct: 61 ATLNKSMERFVGFGNFTFLFKREVFWMVVMQSCIFAISAVFFKALIGFFVAHFVHAIPTK 120 Query: 120 KQRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYSAFNYTLSFFGIGPIPWTGDAMWARFSV 179 QRKWRGMLLVPWVIPPAMSTLAW WLFDPSYSA N+ L GI PIP+ G+ WARFSV Sbjct: 121 GQRKWRGMLLVPWVIPPAMSTLAWFWLFDPSYSAVNWLLVGMGIDPIPFLGNPYWARFSV 180 Query: 180 ILVNVWYGAPFFMIMYLAALKSVPDQLYEAAAIDGANWWQRIWYVTLPMMRNIIAITTLF 239 ILVNVW+GAPFFMIMYLAALKSVPDQLYEAAAIDGANWWQR+WY+TLPMMRNII+IT +F Sbjct: 181 ILVNVWFGAPFFMIMYLAALKSVPDQLYEAAAIDGANWWQRLWYITLPMMRNIISITVMF 240 Query: 240 SLIVTFANFDIVRILTAGGPLDHTHIFATWAFRVGIEGSDVPLGASVSLFMVPILAVAAI 299 SLIVTFANFDIVR+LTAGGP+D TH+FAT++F +GI+G D+PLGA+VSLFMVPIL +AA+ Sbjct: 241 SLIVTFANFDIVRVLTAGGPIDSTHVFATYSFLLGIQGGDIPLGAAVSLFMVPILGIAAV 300 Query: 300 FILRDITKRGNEA 312 FILRDITKRG EA Sbjct: 301 FILRDITKRGGEA 313