BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0013.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771198.1| d-3-phosphoglycerate dehydrogenase [Bradyrhizob... 569 e-160 ref|YP_001205804.1| putative phosphoglycerate dehydrogenase [Bra... 559 e-157 ref|YP_001240090.1| putative phosphoglycerate dehydrogenase [Bra... 556 e-156 ref|YP_570035.1| D-isomer specific 2-hydroxyacid dehydrogenase [... 513 e-143 ref|YP_001992300.1| D-isomer specific 2-hydroxyacid dehydrogenas... 506 e-141 >ref|NP_771198.1| d-3-phosphoglycerate dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC49823.1| blr4558 [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 277/329 (84%), Positives = 294/329 (89%) Query: 1 MATNKKKIFITQTLSPGARVLLNERDDVELIEFPNLISAKDFQTMLEQHAPVHGVALGAT 60 MATNKKKIF+TQTLS GAR LL +RDD+EL+EF NLISAKDFQ +L+ HAPVHGVALGAT Sbjct: 1 MATNKKKIFVTQTLSQGARTLLTQRDDIELVEFANLISAKDFQALLKSHAPVHGVALGAT 60 Query: 61 RFGEAELEASKGMMVVTRIGVGYDAVDVPALSRRKVPLMVAGTANSPSVAEQALFMMLTL 120 FGE ELEASK M VVTRIGVGYDAVDVPALSRRKVPLMVAG+ANSPSVAEQALFMMLTL Sbjct: 61 AFGETELEASKDMKVVTRIGVGYDAVDVPALSRRKVPLMVAGSANSPSVAEQALFMMLTL 120 Query: 121 AKRAQEMHTMVKDGTWASRLGVLPFDLYGKTVLIVGFGRIGTRTAKRCLAMEMNVLVYDP 180 AKRAQEMH+ VKDG WA RLG+LPFDLYGKTVLI+GFGRIGTRTAKRCLAMEM V VYDP Sbjct: 121 AKRAQEMHSCVKDGKWADRLGMLPFDLYGKTVLIIGFGRIGTRTAKRCLAMEMRVQVYDP 180 Query: 181 YKPAGEITAAGCEAVPSLEAALPRADFVTIHCPKNPETVGLFNAARIRLMKPTAYLINTA 240 YKPA EI AAG E V L+AALP ADFVTIHCPK PETVGLF+AARI MKP +YLINTA Sbjct: 181 YKPAAEIKAAGYEPVADLDAALPHADFVTIHCPKTPETVGLFDAARIGRMKPKSYLINTA 240 Query: 241 RGGIVDEKALHDALVSGKLAGAGLDVFEVEPPPVGQPLHALPNVIMAPHVAGVTVEAVDR 300 RGGIV E AL+DAL SGKLAGAG+DVFEVEPPPV L ALPNVIMAPHVAGVTVEAV R Sbjct: 241 RGGIVKEAALYDALTSGKLAGAGIDVFEVEPPPVSNALFALPNVIMAPHVAGVTVEAVSR 300 Query: 301 MSEQTARNILSVLDGSPLRQNVINQDVLG 329 MSEQTARNILSVLDG P+RQN+INQDVLG Sbjct: 301 MSEQTARNILSVLDGDPIRQNIINQDVLG 329 >ref|YP_001205804.1| putative phosphoglycerate dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL77579.1| putative phosphoglycerate dehydrogenase [Bradyrhizobium sp. ORS 278] Length = 332 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 270/327 (82%), Positives = 290/327 (88%) Query: 2 ATNKKKIFITQTLSPGARVLLNERDDVELIEFPNLISAKDFQTMLEQHAPVHGVALGATR 61 ATNK KI +TQ+ S R LL+ R+DVE+IEFPN+ISA DF +L HAPVHGVALGATR Sbjct: 6 ATNKNKILVTQSFSAKGRALLSAREDVEMIEFPNMISAADFSALLSSHAPVHGVALGATR 65 Query: 62 FGEAELEASKGMMVVTRIGVGYDAVDVPALSRRKVPLMVAGTANSPSVAEQALFMMLTLA 121 FGE EL A+ M VVTRIGVG+DAVDVPALSR KVPLMVAGTANSPSVAEQALFMMLTLA Sbjct: 66 FGEPELLAAGDMKVVTRIGVGFDAVDVPALSRHKVPLMVAGTANSPSVAEQALFMMLTLA 125 Query: 122 KRAQEMHTMVKDGTWASRLGVLPFDLYGKTVLIVGFGRIGTRTAKRCLAMEMNVLVYDPY 181 KRA EMH MVKDGTW SRLGVLPFDLYGKTVLI+GFGRIGTRTAKRCLAMEM VLVYDPY Sbjct: 126 KRASEMHAMVKDGTWGSRLGVLPFDLYGKTVLIIGFGRIGTRTAKRCLAMEMQVLVYDPY 185 Query: 182 KPAGEITAAGCEAVPSLEAALPRADFVTIHCPKNPETVGLFNAARIRLMKPTAYLINTAR 241 KPA EITAAGCE V L+AALPRADFV+IHCPK ET+GLFNAAR+RLMKPTAYLINTAR Sbjct: 186 KPAAEITAAGCEPVADLDAALPRADFVSIHCPKTQETIGLFNAARLRLMKPTAYLINTAR 245 Query: 242 GGIVDEKALHDALVSGKLAGAGLDVFEVEPPPVGQPLHALPNVIMAPHVAGVTVEAVDRM 301 GG++DE AL+DAL +G+LAGAGLDVFE EPPPVG LHALPNVIMAPHVAGVT EAVDRM Sbjct: 246 GGLIDEAALYDALSTGRLAGAGLDVFEQEPPPVGHALHALPNVIMAPHVAGVTREAVDRM 305 Query: 302 SEQTARNILSVLDGSPLRQNVINQDVL 328 SEQTARNILSVLD P+RQNVINQDVL Sbjct: 306 SEQTARNILSVLDREPIRQNVINQDVL 332 >ref|YP_001240090.1| putative phosphoglycerate dehydrogenase [Bradyrhizobium sp. BTAi1] gb|ABQ36184.1| putative phosphoglycerate dehydrogenase [Bradyrhizobium sp. BTAi1] Length = 332 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 268/327 (81%), Positives = 290/327 (88%) Query: 2 ATNKKKIFITQTLSPGARVLLNERDDVELIEFPNLISAKDFQTMLEQHAPVHGVALGATR 61 ATNK KI +T++ S R LL RDDVE+IEFPN+ISA DF +L+ HAPVHGVALGATR Sbjct: 6 ATNKNKILVTESFSAKGRALLTARDDVEMIEFPNMISAADFSALLKSHAPVHGVALGATR 65 Query: 62 FGEAELEASKGMMVVTRIGVGYDAVDVPALSRRKVPLMVAGTANSPSVAEQALFMMLTLA 121 FGE EL A+ M VVTRIGVG+DAVDVPALS+ KVPLMVAGTANSPSVAEQALFMMLTLA Sbjct: 66 FGEPELLAAGDMKVVTRIGVGFDAVDVPALSKHKVPLMVAGTANSPSVAEQALFMMLTLA 125 Query: 122 KRAQEMHTMVKDGTWASRLGVLPFDLYGKTVLIVGFGRIGTRTAKRCLAMEMNVLVYDPY 181 KRA EMH MV+DGTW SRLGVLPFDLYGKTVLI+GFGRIGTRTAKRC AMEM VLVYDPY Sbjct: 126 KRANEMHAMVRDGTWGSRLGVLPFDLYGKTVLIIGFGRIGTRTAKRCQAMEMQVLVYDPY 185 Query: 182 KPAGEITAAGCEAVPSLEAALPRADFVTIHCPKNPETVGLFNAARIRLMKPTAYLINTAR 241 KPA +ITAAGCE V L+AALPRADFV+IHCPK PET+GLFNAAR+RLMKPTAYLINTAR Sbjct: 186 KPAADITAAGCEPVADLDAALPRADFVSIHCPKTPETIGLFNAARLRLMKPTAYLINTAR 245 Query: 242 GGIVDEKALHDALVSGKLAGAGLDVFEVEPPPVGQPLHALPNVIMAPHVAGVTVEAVDRM 301 GG++DE AL+DAL S +LAGAGLDVFE EPPPVG LHALPNVIMAPHVAGVT EAVDRM Sbjct: 246 GGLIDEAALYDALSSRRLAGAGLDVFEQEPPPVGHALHALPNVIMAPHVAGVTREAVDRM 305 Query: 302 SEQTARNILSVLDGSPLRQNVINQDVL 328 SEQTARNILSVLDG P+RQNVINQDVL Sbjct: 306 SEQTARNILSVLDGDPIRQNVINQDVL 332 >ref|YP_570035.1| D-isomer specific 2-hydroxyacid dehydrogenase [Rhodopseudomonas palustris BisB5] gb|ABE40134.1| D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [Rhodopseudomonas palustris BisB5] Length = 329 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 248/329 (75%), Positives = 277/329 (84%) Query: 1 MATNKKKIFITQTLSPGARVLLNERDDVELIEFPNLISAKDFQTMLEQHAPVHGVALGAT 60 M TNKKK+ +T++LS R L ER D+E++EFPN+ISA DF+T+L APVHGVALGAT Sbjct: 1 MTTNKKKLLVTESLSERGRALFQERGDIEVVEFPNMISAADFETLLHTQAPVHGVALGAT 60 Query: 61 RFGEAELEASKGMMVVTRIGVGYDAVDVPALSRRKVPLMVAGTANSPSVAEQALFMMLTL 120 RFGE EL ASK M VV RIGVGYDAVDV ALSRRKVPLMVAGTANSPSVAEQALFMMLTL Sbjct: 61 RFGETELAASKDMKVVARIGVGYDAVDVHALSRRKVPLMVAGTANSPSVAEQALFMMLTL 120 Query: 121 AKRAQEMHTMVKDGTWASRLGVLPFDLYGKTVLIVGFGRIGTRTAKRCLAMEMNVLVYDP 180 AKR E+H +VK G WA+RLG+LPFDL+GKTVLIVGFGRIGTRTAKRCLAMEM VLVYDP Sbjct: 121 AKRGVELHALVKTGAWATRLGLLPFDLFGKTVLIVGFGRIGTRTAKRCLAMEMTVLVYDP 180 Query: 181 YKPAGEITAAGCEAVPSLEAALPRADFVTIHCPKNPETVGLFNAARIRLMKPTAYLINTA 240 YK I AAGCE V L+AALPRADFV++HCPK ET GLF+A R+ MK TAYLINTA Sbjct: 181 YKSVDGIEAAGCEKVDDLDAALPRADFVSLHCPKTTETTGLFDAVRLSKMKATAYLINTA 240 Query: 241 RGGIVDEKALHDALVSGKLAGAGLDVFEVEPPPVGQPLHALPNVIMAPHVAGVTVEAVDR 300 RGGI+ E AL+DALV+G+LAGAGLDVFE EPPP+G L LPNVI+APHVAGVT EA+DR Sbjct: 241 RGGIIVEAALYDALVAGQLAGAGLDVFEQEPPPLGHKLFDLPNVIIAPHVAGVTREALDR 300 Query: 301 MSEQTARNILSVLDGSPLRQNVINQDVLG 329 M EQTARN+LS LDG P+R NVINQDVLG Sbjct: 301 MGEQTARNMLSALDGQPIRANVINQDVLG 329 >ref|YP_001992300.1| D-isomer specific 2-hydroxyacid dehydrogenase [Rhodopseudomonas palustris TIE-1] gb|ACF01825.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [Rhodopseudomonas palustris TIE-1] Length = 329 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 243/329 (73%), Positives = 280/329 (85%) Query: 1 MATNKKKIFITQTLSPGARVLLNERDDVELIEFPNLISAKDFQTMLEQHAPVHGVALGAT 60 M +N KK+ +T++LS R L+ ER D+E+IEFPN+ISA+DF +L APVHGVALGAT Sbjct: 1 MTSNTKKLLVTESLSQRGRALIAERGDIEMIEFPNMISAEDFDALLRTEAPVHGVALGAT 60 Query: 61 RFGEAELEASKGMMVVTRIGVGYDAVDVPALSRRKVPLMVAGTANSPSVAEQALFMMLTL 120 RFGE EL+A++ M VV RIGVGYDA+DVPAL++RKVPLM AGTANSPSVAEQALFMMLTL Sbjct: 61 RFGERELDAAQQMRVVARIGVGYDAIDVPALNKRKVPLMTAGTANSPSVAEQALFMMLTL 120 Query: 121 AKRAQEMHTMVKDGTWASRLGVLPFDLYGKTVLIVGFGRIGTRTAKRCLAMEMNVLVYDP 180 AKR E+H +VK G WA+RLG+LPFDL+GKTVLIVGFGRIGTRTAKRCLAMEMNV VYDP Sbjct: 121 AKRGAELHALVKTGAWATRLGLLPFDLFGKTVLIVGFGRIGTRTAKRCLAMEMNVEVYDP 180 Query: 181 YKPAGEITAAGCEAVPSLEAALPRADFVTIHCPKNPETVGLFNAARIRLMKPTAYLINTA 240 Y PA I AAGC+ V L+AALP ADFV++HCPK ET GLF+AAR+ MKPTAYLINTA Sbjct: 181 YVPAAAIEAAGCKPVSDLDAALPDADFVSLHCPKTAETTGLFDAARLSKMKPTAYLINTA 240 Query: 241 RGGIVDEKALHDALVSGKLAGAGLDVFEVEPPPVGQPLHALPNVIMAPHVAGVTVEAVDR 300 RGGIV E+AL+DAL++GKLAGAGLDVFE EPPP G L LPNVI+APHVAGVT EA+DR Sbjct: 241 RGGIVVEQALYDALLAGKLAGAGLDVFEQEPPPHGHKLFDLPNVIIAPHVAGVTREALDR 300 Query: 301 MSEQTARNILSVLDGSPLRQNVINQDVLG 329 M EQTARN+LSVLDG P+R NV+NQDVLG Sbjct: 301 MGEQTARNMLSVLDGDPIRANVVNQDVLG 329