BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0164.0004.p         (96 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001240100.1| hypothetical protein BBta_4131 [Bradyrhizobi...   174   3e-42
ref|YP_001205792.1| hypothetical protein BRADO3799 [Bradyrhizobi...   174   4e-42
ref|NP_771205.1| hypothetical protein bll4565 [Bradyrhizobium ja...   172   1e-41
ref|YP_569767.1| hypothetical protein RPD_2637 [Rhodopseudomonas...   171   5e-41
ref|YP_486444.1| hypothetical protein RPB_2831 [Rhodopseudomonas...   167   7e-40

>ref|YP_001240100.1| hypothetical protein BBta_4131 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36194.1| hypothetical protein BBta_4131 [Bradyrhizobium sp. BTAi1]
          Length = 232

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/92 (92%), Positives = 87/92 (94%)

Query: 5   SAPRSVAGLTFVGWGEPIGCGGVAVFPNDVVVADQDGAVLIPQAFLDHVLAEGPEQERME 64
           +AP SVAGLTFVGWGE IGCGGVAVFPNDVVVADQDGAVLIPQA LDHVLAEGPEQERME
Sbjct: 141 AAPPSVAGLTFVGWGEAIGCGGVAVFPNDVVVADQDGAVLIPQAMLDHVLAEGPEQERME 200

Query: 65  AWIVNEVNNGAQLPGLYPMNAETKARYAASKK 96
           AWIV+EVN GA LPGLYPMNAETKARYAASKK
Sbjct: 201 AWIVDEVNKGAVLPGLYPMNAETKARYAASKK 232


>ref|YP_001205792.1| hypothetical protein BRADO3799 [Bradyrhizobium sp. ORS 278]
 emb|CAL77567.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 232

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/92 (92%), Positives = 87/92 (94%)

Query: 5   SAPRSVAGLTFVGWGEPIGCGGVAVFPNDVVVADQDGAVLIPQAFLDHVLAEGPEQERME 64
           +AP SVAGLTFVGWGE IGCGGVAVFPNDVVVADQDGAVLIPQA LDHVLAEGPEQERME
Sbjct: 141 AAPPSVAGLTFVGWGEAIGCGGVAVFPNDVVVADQDGAVLIPQAMLDHVLAEGPEQERME 200

Query: 65  AWIVNEVNNGAQLPGLYPMNAETKARYAASKK 96
           AWIV+EVN GA LPGLYPMNAETKARYAASKK
Sbjct: 201 AWIVDEVNKGAVLPGLYPMNAETKARYAASKK 232


>ref|NP_771205.1| hypothetical protein bll4565 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49830.1| bll4565 [Bradyrhizobium japonicum USDA 110]
          Length = 232

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/92 (91%), Positives = 86/92 (93%)

Query: 5   SAPRSVAGLTFVGWGEPIGCGGVAVFPNDVVVADQDGAVLIPQAFLDHVLAEGPEQERME 64
           +AP SVAGLTFVGWGEPIGCGGVAVFPND+VVADQDG VLIPQA LDHVL EG EQERME
Sbjct: 141 AAPPSVAGLTFVGWGEPIGCGGVAVFPNDIVVADQDGCVLIPQAMLDHVLNEGVEQERME 200

Query: 65  AWIVNEVNNGAQLPGLYPMNAETKARYAASKK 96
           AWIVNEVNNGA LPGLYPMNAETKARYAASKK
Sbjct: 201 AWIVNEVNNGAVLPGLYPMNAETKARYAASKK 232


>ref|YP_569767.1| hypothetical protein RPD_2637 [Rhodopseudomonas palustris BisB5]
 gb|ABE39866.1| Dimethylmenaquinone methyltransferase [Rhodopseudomonas palustris
           BisB5]
          Length = 237

 Score =  171 bits (432), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/92 (89%), Positives = 85/92 (92%)

Query: 5   SAPRSVAGLTFVGWGEPIGCGGVAVFPNDVVVADQDGAVLIPQAFLDHVLAEGPEQERME 64
           +AP SVAGLTFVGWGEPIGCGGVAVFP DV+VADQDGAVLIPQA LDHVLAEGPEQERME
Sbjct: 141 AAPPSVAGLTFVGWGEPIGCGGVAVFPKDVIVADQDGAVLIPQALLDHVLAEGPEQERME 200

Query: 65  AWIVNEVNNGAQLPGLYPMNAETKARYAASKK 96
            WIV EVNNGA LPGLYPMNAETKARYAA K+
Sbjct: 201 GWIVEEVNNGAVLPGLYPMNAETKARYAAFKE 232


>ref|YP_486444.1| hypothetical protein RPB_2831 [Rhodopseudomonas palustris HaA2]
 gb|ABD07533.1| Dimethylmenaquinone methyltransferase [Rhodopseudomonas palustris
           HaA2]
          Length = 237

 Score =  167 bits (422), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/92 (85%), Positives = 83/92 (90%)

Query: 5   SAPRSVAGLTFVGWGEPIGCGGVAVFPNDVVVADQDGAVLIPQAFLDHVLAEGPEQERME 64
           +AP SVAGLTFVGWGEPI CGGVAVFP D++VADQDG VLIPQA LDHVLAEGPEQERME
Sbjct: 141 AAPPSVAGLTFVGWGEPIACGGVAVFPKDIIVADQDGVVLIPQALLDHVLAEGPEQERME 200

Query: 65  AWIVNEVNNGAQLPGLYPMNAETKARYAASKK 96
            WIV EVNNGA LPGLYPMNAETKARYAA K+
Sbjct: 201 GWIVEEVNNGAVLPGLYPMNAETKARYAAFKE 232