BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0163.0005.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767785.1| hypothetical protein bll1145 [Bradyrhizobium ja... 624 e-177 ref|YP_530640.1| putative mRNA 3-end processing factor [Rhodopse... 617 e-175 ref|YP_001208554.1| putative metallo-hydrolase/oxidoreductase [B... 613 e-173 ref|YP_001236967.1| putative metallo-hydrolase/oxidoreductase [B... 612 e-173 ref|YP_488210.1| putative mRNA 3-end processing factor [Rhodopse... 605 e-171 >ref|NP_767785.1| hypothetical protein bll1145 [Bradyrhizobium japonicum USDA 110] dbj|BAC46410.1| bll1145 [Bradyrhizobium japonicum USDA 110] Length = 345 Score = 624 bits (1610), Expect = e-177, Method: Compositional matrix adjust. Identities = 300/337 (89%), Positives = 316/337 (93%) Query: 23 MRPQDILMPVPAGLCCKPGGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLDMMR 82 MRPQDIL+P AGLCCKPG FHIDPVRPVERALITHGHSDHARAGHGAVLATQETLDMMR Sbjct: 1 MRPQDILLPAAAGLCCKPGSFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLDMMR 60 Query: 83 LRYGENFAGSVQAIAYGEEIRLGDATVTFHPAGHVLGSAQISVTCKDTRIVASGDYKDAR 142 LRYGENFAGS QAI YGEEIRLGD +V FHPAGHVLGSAQI+VTCKDT IVASGDYKDAR Sbjct: 61 LRYGENFAGSTQAIRYGEEIRLGDVSVKFHPAGHVLGSAQIAVTCKDTCIVASGDYKDAR 120 Query: 143 DPTCSPFELVPCDVFISEATFGLPVFRHGDAAGEVNRLLASVKLFPERAHLVGAYSLGKA 202 DPTC+PFELVPCDVFI+EATFGLPVFRHGDAA EV +LLASV LFPERAHLVGAYSLGKA Sbjct: 121 DPTCAPFELVPCDVFITEATFGLPVFRHGDAADEVKKLLASVALFPERAHLVGAYSLGKA 180 Query: 203 QRVIALLREAGYDAPIYLHGAMEKITYYYQERGIPLGELRPARGMKKAELAGTITLAPPS 262 QRVIALLR+AGYDAPIYLHGAME IT+YYQ RGI LG+LRP G+KKA LAGTITLAPPS Sbjct: 181 QRVIALLRQAGYDAPIYLHGAMETITHYYQSRGIALGDLRPVMGVKKAALAGTITLAPPS 240 Query: 263 ATSDVWTRRFPDPVTAFASGWMRVRARARQGGVELPLVISDHADWDGLTATIAATGAGEI 322 ATSD+WTRRFPDPVTAFASGWMRVRARARQ GVELPLVISDHADWDGLTATIAATGAGEI Sbjct: 241 ATSDIWTRRFPDPVTAFASGWMRVRARARQRGVELPLVISDHADWDGLTATIAATGAGEI 300 Query: 323 WVTHGQEDALVHWCRTKGFAARPLDLVGYGDEDEGET 359 WVTHGQEDALVHWC+++G A+PLDLVGYGDE+E ET Sbjct: 301 WVTHGQEDALVHWCQSRGLRAQPLDLVGYGDEEESET 337 >ref|YP_530640.1| putative mRNA 3-end processing factor [Rhodopseudomonas palustris BisB18] gb|ABD86321.1| putative mRNA 3-end processing factor [Rhodopseudomonas palustris BisB18] Length = 356 Score = 617 bits (1592), Expect = e-175, Method: Compositional matrix adjust. Identities = 296/337 (87%), Positives = 315/337 (93%) Query: 19 YIGTMRPQDILMPVPAGLCCKPGGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETL 78 YIGTMRPQDIL+PV AGLCCKPGGFHIDPVRPVERA+ITHGHSDHAR GHGAVLAT+ETL Sbjct: 7 YIGTMRPQDILLPVAAGLCCKPGGFHIDPVRPVERAVITHGHSDHARPGHGAVLATRETL 66 Query: 79 DMMRLRYGENFAGSVQAIAYGEEIRLGDATVTFHPAGHVLGSAQISVTCKDTRIVASGDY 138 DMMRLRYGENFAGS QAI YGEE+RLG+ TVTFHPAGHVLGSAQI+V C TRIVASGDY Sbjct: 67 DMMRLRYGENFAGSAQAIGYGEELRLGEVTVTFHPAGHVLGSAQIAVACGGTRIVASGDY 126 Query: 139 KDARDPTCSPFELVPCDVFISEATFGLPVFRHGDAAGEVNRLLASVKLFPERAHLVGAYS 198 KDA DPTC+PFELVPCDVFI+EATFGLPVFRHG+AA EV +LLASVKLFPERAHLVGAYS Sbjct: 127 KDATDPTCAPFELVPCDVFITEATFGLPVFRHGNAADEVAKLLASVKLFPERAHLVGAYS 186 Query: 199 LGKAQRVIALLREAGYDAPIYLHGAMEKITYYYQERGIPLGELRPARGMKKAELAGTITL 258 LGKAQRVIALLR+AG+DAPIYLHGAMEKIT YY RG+ LGELR +G+KKA+LAGTITL Sbjct: 187 LGKAQRVIALLRQAGFDAPIYLHGAMEKITNYYALRGVALGELRAVKGVKKADLAGTITL 246 Query: 259 APPSATSDVWTRRFPDPVTAFASGWMRVRARARQGGVELPLVISDHADWDGLTATIAATG 318 APPSATSD+WTRRFPDPVTAFASGWMRVRARARQ GVELPLVISDHADWDGLT+TI ATG Sbjct: 247 APPSATSDIWTRRFPDPVTAFASGWMRVRARARQRGVELPLVISDHADWDGLTSTIKATG 306 Query: 319 AGEIWVTHGQEDALVHWCRTKGFAARPLDLVGYGDED 355 AGEIWVTHGQEDALVHWC T+G ARPLDLVGYGDED Sbjct: 307 AGEIWVTHGQEDALVHWCTTQGLRARPLDLVGYGDED 343 >ref|YP_001208554.1| putative metallo-hydrolase/oxidoreductase [Bradyrhizobium sp. ORS 278] emb|CAL80339.1| putative metallo-hydrolase/oxidoreductase [Bradyrhizobium sp. ORS 278] Length = 348 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 295/331 (89%), Positives = 311/331 (93%) Query: 23 MRPQDILMPVPAGLCCKPGGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLDMMR 82 MRPQDIL+PVP+GLCCK GGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLD+MR Sbjct: 4 MRPQDILLPVPSGLCCKAGGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLDIMR 63 Query: 83 LRYGENFAGSVQAIAYGEEIRLGDATVTFHPAGHVLGSAQISVTCKDTRIVASGDYKDAR 142 LRYGENFAGS QAI YGEEI+LGD V+FHPAGHVLGSAQI V+ T IVASGDYKDAR Sbjct: 64 LRYGENFAGSTQAIGYGEEIKLGDVKVSFHPAGHVLGSAQIKVSSGGTCIVASGDYKDAR 123 Query: 143 DPTCSPFELVPCDVFISEATFGLPVFRHGDAAGEVNRLLASVKLFPERAHLVGAYSLGKA 202 DPTC+PFELV CDVFI+EATFGLPVFRHGD A EVN+LLASV LFPERAHLVGAYSLGKA Sbjct: 124 DPTCAPFELVQCDVFITEATFGLPVFRHGDTALEVNKLLASVALFPERAHLVGAYSLGKA 183 Query: 203 QRVIALLREAGYDAPIYLHGAMEKITYYYQERGIPLGELRPARGMKKAELAGTITLAPPS 262 QRVIAL+REAGYDAPIYLHGAMEKIT YYQ +GIPLGELRP +G+KKAELAGTITLAPPS Sbjct: 184 QRVIALIREAGYDAPIYLHGAMEKITRYYQHKGIPLGELRPVKGVKKAELAGTITLAPPS 243 Query: 263 ATSDVWTRRFPDPVTAFASGWMRVRARARQGGVELPLVISDHADWDGLTATIAATGAGEI 322 ATSD+WTRRFPDPVTAFASGWMRVRARARQ GVELPLVISDHADWDGLTATIAATGAGE+ Sbjct: 244 ATSDLWTRRFPDPVTAFASGWMRVRARARQRGVELPLVISDHADWDGLTATIAATGAGEV 303 Query: 323 WVTHGQEDALVHWCRTKGFAARPLDLVGYGD 353 WVTHGQEDALVHWC+TKG ARPLDLVGYGD Sbjct: 304 WVTHGQEDALVHWCQTKGLTARPLDLVGYGD 334 >ref|YP_001236967.1| putative metallo-hydrolase/oxidoreductase [Bradyrhizobium sp. BTAi1] gb|ABQ33061.1| putative metallo-hydrolase/oxidoreductase [Bradyrhizobium sp. BTAi1] Length = 348 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 295/331 (89%), Positives = 313/331 (94%) Query: 23 MRPQDILMPVPAGLCCKPGGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLDMMR 82 MRPQDIL+PVPAGLCCK GGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLD+MR Sbjct: 4 MRPQDILLPVPAGLCCKAGGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLDIMR 63 Query: 83 LRYGENFAGSVQAIAYGEEIRLGDATVTFHPAGHVLGSAQISVTCKDTRIVASGDYKDAR 142 LRYGENFAGS QAI YG+EIRLG+ TV+F+PAGHVLGSAQI V+ T IVASGDYKDAR Sbjct: 64 LRYGENFAGSTQAIRYGDEIRLGEVTVSFYPAGHVLGSAQIKVSSGGTCIVASGDYKDAR 123 Query: 143 DPTCSPFELVPCDVFISEATFGLPVFRHGDAAGEVNRLLASVKLFPERAHLVGAYSLGKA 202 DPTC+PFELV CDVFI+EATFGLPVFRHGDAA EV +LLASV LFPERAHLVGAYSLGKA Sbjct: 124 DPTCAPFELVQCDVFITEATFGLPVFRHGDAAAEVKKLLASVALFPERAHLVGAYSLGKA 183 Query: 203 QRVIALLREAGYDAPIYLHGAMEKITYYYQERGIPLGELRPARGMKKAELAGTITLAPPS 262 QRVIAL+REAGYDAPIYLHGAMEKIT YYQ++GI LGELRP +G+KKAELAGTITLAPPS Sbjct: 184 QRVIALIREAGYDAPIYLHGAMEKITRYYQDKGIALGELRPVKGVKKAELAGTITLAPPS 243 Query: 263 ATSDVWTRRFPDPVTAFASGWMRVRARARQGGVELPLVISDHADWDGLTATIAATGAGEI 322 ATSD+WTRRFPDPVTAFASGWMRVRARARQ GVELPLVISDHADWDGLTATIAATGAGE+ Sbjct: 244 ATSDLWTRRFPDPVTAFASGWMRVRARARQRGVELPLVISDHADWDGLTATIAATGAGEV 303 Query: 323 WVTHGQEDALVHWCRTKGFAARPLDLVGYGD 353 WVTHGQEDALVHWCR+KG AARPLDLVGYGD Sbjct: 304 WVTHGQEDALVHWCRSKGLAARPLDLVGYGD 334 >ref|YP_488210.1| putative mRNA 3-end processing factor [Rhodopseudomonas palustris HaA2] gb|ABD09299.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 351 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 291/337 (86%), Positives = 310/337 (91%) Query: 20 IGTMRPQDILMPVPAGLCCKPGGFHIDPVRPVERALITHGHSDHARAGHGAVLATQETLD 79 + +MRPQDILMP GLCCKPGGFHIDPVRPVERA+ITHGHSDHAR GHGAVLATQETLD Sbjct: 1 MSSMRPQDILMPQAEGLCCKPGGFHIDPVRPVERAVITHGHSDHARPGHGAVLATQETLD 60 Query: 80 MMRLRYGENFAGSVQAIAYGEEIRLGDATVTFHPAGHVLGSAQISVTCKDTRIVASGDYK 139 MMRLRYGENFAGS QAI YGE IRLG+ TVTFHPAGHVLGSAQ++V C RIVASGDYK Sbjct: 61 MMRLRYGENFAGSTQAIGYGETIRLGETTVTFHPAGHVLGSAQVAVECGGLRIVASGDYK 120 Query: 140 DARDPTCSPFELVPCDVFISEATFGLPVFRHGDAAGEVNRLLASVKLFPERAHLVGAYSL 199 DA DPTC+PFELV CDVFI+EATFGLPVFRH DA GEV +LL SV LFPERAHLVGAYSL Sbjct: 121 DAPDPTCTPFELVRCDVFITEATFGLPVFRHPDATGEVRKLLGSVALFPERAHLVGAYSL 180 Query: 200 GKAQRVIALLREAGYDAPIYLHGAMEKITYYYQERGIPLGELRPARGMKKAELAGTITLA 259 GKAQRVIAL+R+AGYDAPIYLHGAMEKIT YY +RG+PLGELRP +G+KKAELAGTITLA Sbjct: 181 GKAQRVIALIRDAGYDAPIYLHGAMEKITRYYAQRGLPLGELRPVKGVKKAELAGTITLA 240 Query: 260 PPSATSDVWTRRFPDPVTAFASGWMRVRARARQGGVELPLVISDHADWDGLTATIAATGA 319 PPSATSD+WTRRFPDP+TAFASGWMRVRARARQ GVELPLVISDHADWDGLTATIAATGA Sbjct: 241 PPSATSDLWTRRFPDPLTAFASGWMRVRARARQRGVELPLVISDHADWDGLTATIAATGA 300 Query: 320 GEIWVTHGQEDALVHWCRTKGFAARPLDLVGYGDEDE 356 GE+WVTHGQEDALVHWC+ KG ARPLDLVGYGDEDE Sbjct: 301 GEVWVTHGQEDALVHWCQRKGLTARPLDLVGYGDEDE 337