BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0162.0003.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240699.1| AraC family transcriptional regulator [Brady... 411 e-113 ref|YP_001206497.1| AraC/XylS family transcriptional regulator [... 410 e-112 gb|EGH10516.1| helix-turn-helix, AraC type [Pseudomonas syringae... 261 9e-68 gb|EGH97754.1| helix-turn-helix, AraC type [Pseudomonas syringae... 261 2e-67 gb|EGH52586.1| helix-turn-helix, AraC type [Pseudomonas syringae... 253 3e-65 >ref|YP_001240699.1| AraC family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ36793.1| transcriptional regulator, AraC family [Bradyrhizobium sp. BTAi1] Length = 318 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/314 (62%), Positives = 241/314 (76%) Query: 1 MPALFTTEDAPTHRRLALWQDIVCDVFVQLDCKSDLGTAFHGAITSAQLGAVKCSVVSSS 60 MP LFTT+ +P HRRLA WQDIVCDV+V LDC SDLG+AF G++T LG CS V+S Sbjct: 1 MPVLFTTDGSPGHRRLAQWQDIVCDVYVGLDCTSDLGSAFRGSVTHTALGRAVCSEVASD 60 Query: 61 RQRVLRTPSRIARASEDFVLFALGRSGAGGVMQDGRETVIQPGEFAFYDTTRPYELRFNA 120 RQRV RT RIARA D+VL ALGR G GGV+QDGR+TVI+PGEFA YDTTRPYEL+F+A Sbjct: 61 RQRVHRTSQRIARADADYVLIALGREGIGGVVQDGRDTVIRPGEFAIYDTTRPYELQFDA 120 Query: 121 EFTQTIFQVPRAMLHRRFAGTQGLTATTFTSDRPVQRLAWQFISGLSEIADKLDPDNAIR 180 F QT+F++PR ML RR T+ +TA +F +D P+Q LA+ FI L E AD + ++A R Sbjct: 121 AFRQTVFKLPRDMLQRRIGATEAVTAISFGADSPLQPLAYDFIIRLCERADHIGTEHAER 180 Query: 181 LADQAADLLAMAMSERLGGAALPASTHRSALLYRLKAHVLAHLPNPELGLTETAAALGIS 240 L+DQAADL+AM ++ERL LPAS+HR+ALLYR+KAHV HL +P+L L A LG+S Sbjct: 181 LSDQAADLVAMTLAERLRTQPLPASSHRAALLYRIKAHVRTHLADPDLSLATAARELGLS 240 Query: 241 PRYVNSLLADEDTSFQRFVLAQRLERCKRDLASPTHAHRHIGEIAFAWGFNDLSHFGRVF 300 RYVN L +DE SFQRFVLA+RL +C+RDL P AHRHI EIA +WGFNDLSHFGRVF Sbjct: 241 ARYVNDLFSDEQLSFQRFVLAERLRQCQRDLGMPALAHRHISEIALSWGFNDLSHFGRVF 300 Query: 301 RDHYGLSPRDWRQS 314 R +GLSPR+WR++ Sbjct: 301 RAQFGLSPREWRRT 314 >ref|YP_001206497.1| AraC/XylS family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL78277.1| putative Transcriptional regulatory protein, AraC/XylS family [Bradyrhizobium sp. ORS 278] Length = 318 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/316 (62%), Positives = 243/316 (76%) Query: 1 MPALFTTEDAPTHRRLALWQDIVCDVFVQLDCKSDLGTAFHGAITSAQLGAVKCSVVSSS 60 MP LFTTE +P HRRLALWQDIVCDV+V LDC SDLG+AF GA+T LG CS V S Sbjct: 1 MPILFTTEGSPGHRRLALWQDIVCDVYVGLDCTSDLGSAFRGAVTHTTLGRAVCSEVVSD 60 Query: 61 RQRVLRTPSRIARASEDFVLFALGRSGAGGVMQDGRETVIQPGEFAFYDTTRPYELRFNA 120 RQRV RT RIARA D+VL ALGR G GGV QDGR+T+I+PGEFA YDTTR YEL+F+ Sbjct: 61 RQRVRRTSQRIARADADYVLVALGREGIGGVTQDGRDTMIRPGEFAIYDTTRTYELQFDT 120 Query: 121 EFTQTIFQVPRAMLHRRFAGTQGLTATTFTSDRPVQRLAWQFISGLSEIADKLDPDNAIR 180 F QT+F++PR ML RR T+ +TA TF +D P+Q LA++FI L E AD + ++A R Sbjct: 121 AFRQTVFKLPRDMLQRRIGATEAVTAITFGADSPLQPLAYEFIVKLCERADHIGAEHADR 180 Query: 181 LADQAADLLAMAMSERLGGAALPASTHRSALLYRLKAHVLAHLPNPELGLTETAAALGIS 240 LADQAADLLAM ++ERL LPAS+HR+ALLYR+KA+V A L + +L L + A LG+S Sbjct: 181 LADQAADLLAMTLAERLRTQPLPASSHRAALLYRIKANVRARLADCDLSLPKVARELGLS 240 Query: 241 PRYVNSLLADEDTSFQRFVLAQRLERCKRDLASPTHAHRHIGEIAFAWGFNDLSHFGRVF 300 PRY+N L +DE SFQRFVLA+RL+ C+RDLA+P A+R I EIAF+WGFNDLSHFGRVF Sbjct: 241 PRYINDLFSDEQLSFQRFVLAERLKLCRRDLAAPALAYRQISEIAFSWGFNDLSHFGRVF 300 Query: 301 RDHYGLSPRDWRQSRL 316 R+ +G SPR+WR+S L Sbjct: 301 REQFGQSPREWRRSNL 316 >gb|EGH10516.1| helix-turn-helix, AraC type [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 315 Score = 261 bits (667), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 126/312 (40%), Positives = 190/312 (60%), Gaps = 2/312 (0%) Query: 1 MPALFTTEDAPTHRRLALWQDIVCDVFVQLDCKSDLGTAFHGAITSAQLGAVKCSVVSSS 60 M F T++ R WQ++VC+ FV L C F G + S + + V + Sbjct: 1 MSIFFDTDNIAARERAEFWQEVVCNTFVPLSCAFSDRNNFQGRLRSHSIATLSLVDVQAC 60 Query: 61 RQRVLRTPSRIARASEDFVLFALGRSGAGGVMQDGRETVIQPGEFAFYDTTRPYELRFNA 120 RQ V+R +RI+R+ ++FVL +L G V Q+GRE +++ G+FA YDT RPY L F++ Sbjct: 61 RQTVVRDAARISRSDDEFVLVSLALEGRAQVSQEGREAILEVGDFAIYDTRRPYRLHFDS 120 Query: 121 EFTQTIFQVPRAMLHRRFAGTQGLTATTFTSDRPVQRLAWQFISGLSEIADKLDPDNAIR 180 F QT+ Q+PR L +R + LTA + + D P+ L + F +GL+ + +++ +R Sbjct: 121 AFRQTVVQIPRKSLQQRLCNLEYLTALSMSRDNPLNGLVFDFFTGLAALENRVGETQQVR 180 Query: 181 LADQAADLLAMAMSERLGGAALPASTHRSALLYRLKAHVLAHLPNPELGLTETAAALGIS 240 + +Q DLLAMA+SER+ G A + RSALL R+K H+ ++L + L L +A GIS Sbjct: 181 ITEQGLDLLAMALSERVKGQA--QGSKRSALLLRIKDHIQSNLTDTTLTLPCVSARFGIS 238 Query: 241 PRYVNSLLADEDTSFQRFVLAQRLERCKRDLASPTHAHRHIGEIAFAWGFNDLSHFGRVF 300 RY+NSL DE+TSF R++L+ RL+ C DL P +R I EIA+ WGF+D+++F RVF Sbjct: 239 TRYLNSLFHDEETSFGRYLLSSRLQHCANDLREPLLVNRQISEIAWRWGFSDVAYFSRVF 298 Query: 301 RDHYGLSPRDWR 312 R YGL+ R++R Sbjct: 299 RQRYGLTAREYR 310 >gb|EGH97754.1| helix-turn-helix, AraC type [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 312 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 127/312 (40%), Positives = 187/312 (59%), Gaps = 5/312 (1%) Query: 1 MPALFTTEDAPTHRRLALWQDIVCDVFVQLDCKSDLGTAFHGAITSAQLGAVKCSVVSSS 60 M F T + R WQ++VC+ FV L C F G + S + + V + Sbjct: 1 MSIFFDTNNIAARERAEFWQEVVCNTFVPLSCAFSDRNNFQGRLRSHSIATLSLVDVQAC 60 Query: 61 RQRVLRTPSRIARASEDFVLFALGRSGAGGVMQDGRETVIQPGEFAFYDTTRPYELRFNA 120 RQ V+R +RI+R+ ++FVL +L G V Q+GRE V++ G+FA YDT RPY L F++ Sbjct: 61 RQTVVRDAARISRSDDEFVLVSLALEGRAQVSQEGREAVLEVGDFAIYDTRRPYRLHFDS 120 Query: 121 EFTQTIFQVPRAMLHRRFAGTQGLTATTFTSDRPVQRLAWQFISGLSEIADKLDPDNAIR 180 F QT+ Q+PR L +R + LTA + + D P+ L + F +GL+ + +++ +R Sbjct: 121 AFRQTVVQIPRKSLQQRLCNLEYLTALSMSRDNPLNGLVFDFFTGLAALENRVGETQQVR 180 Query: 181 LADQAADLLAMAMSERLGGAALPASTHRSALLYRLKAHVLAHLPNPELGLTETAAALGIS 240 + +Q DLLAMA+SER+ G T RSALL R+K H+ ++L + L L +A GIS Sbjct: 181 ITEQGLDLLAMALSERVKG-----QTQRSALLLRIKDHIQSNLTDTTLNLPCVSARFGIS 235 Query: 241 PRYVNSLLADEDTSFQRFVLAQRLERCKRDLASPTHAHRHIGEIAFAWGFNDLSHFGRVF 300 RY+NSL DE+TSF R++L+ RL+ C DL P +R I EIA+ WGF+D+++F RVF Sbjct: 236 TRYLNSLFHDEETSFGRYLLSSRLQHCANDLREPLLVNRQISEIAWRWGFSDVAYFSRVF 295 Query: 301 RDHYGLSPRDWR 312 R YGL R++R Sbjct: 296 RQRYGLPAREYR 307 >gb|EGH52586.1| helix-turn-helix, AraC type [Pseudomonas syringae Cit 7] Length = 319 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/312 (39%), Positives = 184/312 (58%), Gaps = 2/312 (0%) Query: 1 MPALFTTEDAPTHRRLALWQDIVCDVFVQLDCKSDLGTAFHGAITSAQLGAVKCSVVSSS 60 M F T R WQ++VC FV L+C FHG + S + + V + Sbjct: 1 MSIYFDTNSIAVQERAEFWQEVVCSTFVPLECAFSDRQNFHGRLRSHSIAGLALVEVQAC 60 Query: 61 RQRVLRTPSRIARASEDFVLFALGRSGAGGVMQDGRETVIQPGEFAFYDTTRPYELRFNA 120 Q V+R S I+R+ ++FVL +L G V Q+GRE +++ G+FA YDT RPY L F++ Sbjct: 61 SQTVVRDTSSISRSDDEFVLVSLALEGRAQVSQEGREALLEVGDFAIYDTRRPYRLHFDS 120 Query: 121 EFTQTIFQVPRAMLHRRFAGTQGLTATTFTSDRPVQRLAWQFISGLSEIADKLDPDNAIR 180 F QT+ Q+PR L +R + LTA + + D P+ L + F +GL+ + +++ R Sbjct: 121 AFRQTVVQIPRNSLQQRLCNLEYLTALSLSRDDPLNGLVFDFFTGLAALENRVGESQQAR 180 Query: 181 LADQAADLLAMAMSERLGGAALPASTHRSALLYRLKAHVLAHLPNPELGLTETAAALGIS 240 + +Q DLLAMA+SER+ G A + RS LL R+K H+ A+L + +L L + G+S Sbjct: 181 ITEQGLDLLAMALSERVEGQA--QGSRRSGLLLRIKDHIQANLADTKLSLASVSVRFGVS 238 Query: 241 PRYVNSLLADEDTSFQRFVLAQRLERCKRDLASPTHAHRHIGEIAFAWGFNDLSHFGRVF 300 RY++SL DE TSF R++LA RL+RC DL P A+R I EIA+ WGF+D+++F RVF Sbjct: 239 TRYISSLFQDEQTSFGRYLLASRLQRCASDLREPLLANRQISEIAWRWGFSDVAYFSRVF 298 Query: 301 RDHYGLSPRDWR 312 R +G+ R +R Sbjct: 299 RQRFGVPARQYR 310