BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0162.0002.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_570180.1| type IV pilus assembly PilZ [Rhodopseudomonas p...   132   2e-29
ref|YP_486014.1| hypothetical protein RPB_2398 [Rhodopseudomonas...   129   1e-28
ref|YP_533181.1| type IV pilus assembly PilZ [Rhodopseudomonas p...    82   4e-14
ref|YP_782310.1| type IV pilus assembly PilZ [Rhodopseudomonas p...    79   3e-13
ref|YP_570177.1| type IV pilus assembly PilZ [Rhodopseudomonas p...    78   4e-13

>ref|YP_570180.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris BisB5]
 gb|ABE40279.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris BisB5]
          Length = 114

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 86/116 (74%), Gaps = 3/116 (2%)

Query: 1   MQDRRQSVRDKVFFGAVAEINERGSTMDCVVRNISEGGACVEFGDAVHLPEELNLSVARK 60
           M DRR+S RDKV +G VA INERGST DCVVRNIS+ GA +EFG A  L +++ L+VA+K
Sbjct: 1   MDDRRKSRRDKVVYGGVAAINERGSTRDCVVRNISDNGATIEFGTAAGLSDQIALTVAKK 60

Query: 61  GRSFLARLIWRQANKVGLAFRIMTSDTPVSDLDERVRRSEIKKRQLQRRINELLGQ 116
            R++ ++++WR+ N VGLAF   +  T  S L ER+R+SE  KR+LQR+I  LLG+
Sbjct: 61  ARTYPSKIVWRRGNTVGLAF---SETTDASQLSERLRKSEKTKRELQRKIKVLLGE 113


>ref|YP_486014.1| hypothetical protein RPB_2398 [Rhodopseudomonas palustris HaA2]
 gb|ABD07103.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 114

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 88/116 (75%), Gaps = 3/116 (2%)

Query: 1   MQDRRQSVRDKVFFGAVAEINERGSTMDCVVRNISEGGACVEFGDAVHLPEELNLSVARK 60
           M DRR+S RDKV +G VA IN RG+T +CVVRNIS+ GA VEFG A  +P+++ L+VARK
Sbjct: 1   MDDRRKSRRDKVVYGGVAAINARGATRNCVVRNISDDGATVEFGSAAGVPDQIALTVARK 60

Query: 61  GRSFLARLIWRQANKVGLAFRIMTSDTPVSDLDERVRRSEIKKRQLQRRINELLGQ 116
            R++ ++++WR+ + VGLAF   ++    SDL ER+R+SE KKR+LQR+I  LLG+
Sbjct: 61  ARTYPSKIVWRRGDTVGLAF---SAAADGSDLGERLRKSERKKRELQRKIKVLLGE 113


>ref|YP_533181.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris BisB18]
 gb|ABD88862.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris BisB18]
          Length = 119

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 73/120 (60%), Gaps = 4/120 (3%)

Query: 1   MQDRRQSVRDKVFFGAVAEINERGSTMDCVVRNISEGGACVEFGDAVHLPEELNLSVARK 60
           M +RRQ  R +VF G     NER S++DC+VRN+S  GA VEF +A  +P+ ++L++ RK
Sbjct: 1   MLERRQHFRGRVFCGGRIAFNERESSIDCIVRNLSSCGAKVEFNNAAVVPDHVDLTITRK 60

Query: 61  GRSFLARLIWRQANKVGLAFRIMT---SDTPVSDLDERVRRSEIKKRQLQRRINELLGQG 117
              FLAR++W + ++ GL F   +   ++ P+ DL  R+R +E   + L+ ++  L   G
Sbjct: 61  SVGFLARIVWCRQDQAGLEFHGFSQRHAERPL-DLTLRLRATERADQSLRAQLERLRSGG 119


>ref|YP_782310.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris BisA53]
 gb|ABJ07330.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris BisA53]
          Length = 119

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 73/116 (62%), Gaps = 4/116 (3%)

Query: 1   MQDRRQSVRDKVFFGAVAEINERGSTMDCVVRNISEGGACVEFGDAVHLPEELNLSVARK 60
           M +RR   R +V++G     + R +++DC+VRN S  GA V+      +P+ ++L++ARK
Sbjct: 1   MLERRHHQRRRVYYGGRIAFHRRTASIDCIVRNFSSDGAKVQLECPAVVPDLVDLTIARK 60

Query: 61  GRSFLARLIWRQANKVGLAF---RIMTSDTPVSDLDERVRRSEIKKRQLQRRINEL 113
           G +FLAR++WR+A++ GL     R + S+ P+ D+  R+R +E   + L+ +I +L
Sbjct: 61  GVAFLARVVWRRADEAGLVLHSPRTVESELPL-DIALRIRATERANQSLRDQIEQL 115


>ref|YP_570177.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris BisB5]
 gb|ABE40276.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris BisB5]
          Length = 119

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 4/116 (3%)

Query: 1   MQDRRQSVRDKVFFGAVAEINERGSTMDCVVRNISEGGACVEFGDAVHLPEELNLSVARK 60
           M +RR  +R +V++G     + R +T+DC+VRN+S  GA +E G+   + + ++LS+  +
Sbjct: 1   MLERRSGLRRRVYYGGRLAFHARTATIDCIVRNLSAEGAQIELGNPAAVSDRVDLSITHQ 60

Query: 61  GRSFLARLIWRQANKVGL---AFRIMTSDTPVSDLDERVRRSEIKKRQLQRRINEL 113
           G S+  R++WR+ N  GL   A R   S+ P+ DL  R+R +E    QL+ R+ +L
Sbjct: 61  GVSYFGRIVWRRKNSAGLWLDAPRRQGSELPL-DLALRIRATERVNAQLRARLAQL 115