BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0161.0028.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240750.1| AraC family transcriptional regulator [Brady... 459 e-127 ref|NP_770026.1| transcriptional regulator [Bradyrhizobium japon... 457 e-127 ref|YP_001206729.1| AraC/XylS family transcriptional regulator [... 452 e-125 ref|ZP_01746887.1| transcriptional regulatory protein [Sagittula... 230 2e-58 ref|ZP_07375942.1| transcriptional regulatory protein [Ahrensia ... 225 5e-57 >ref|YP_001240750.1| AraC family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ36844.1| transcriptional regulator, AraC family [Bradyrhizobium sp. BTAi1] Length = 274 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 225/273 (82%), Positives = 241/273 (88%), Gaps = 2/273 (0%) Query: 1 MSRALAVFHGRFGRATVYQLNRPFNVHAHREGHLIFHVGGTPAQIDVSEQRLLLKDDTVV 60 MSRALAVFH RFGRATVYQLNRPFNVHAHREGHLIFHVGGTPA IDV EQR + +D +V Sbjct: 1 MSRALAVFHARFGRATVYQLNRPFNVHAHREGHLIFHVGGTPADIDVCEQRYQIGEDWIV 60 Query: 61 AVNPWEPHNFLPTDMDHGAIFFVLYVNAEWFAPQPATAQGLRFGRTFFPRTEALDRLIRR 120 AVNPWEPHNFLP D+D+GAIFFVLYVNA+WFAP A QGLRFGRT F RT ALDR IRR Sbjct: 61 AVNPWEPHNFLPNDVDNGAIFFVLYVNADWFAPSAAREQGLRFGRTCFRRTAALDRCIRR 120 Query: 121 TAALVCGAPSLRSLDCELRQLIDSCYEESWQAAQ--DARAAAAVTDFRVRKSIKLMSESP 178 TAALVCGAPSL LD ELRQLIDSCYEESW+ + R A VTDFRVRK IKLMS+SP Sbjct: 121 TAALVCGAPSLGCLDGELRQLIDSCYEESWRIVELMPERRCAEVTDFRVRKCIKLMSDSP 180 Query: 179 GAEIELDAIAREAGLSRPHFYRLFRTQTGVTPHLYMNTLIMEQALDALVATETPIADIGF 238 AEIELD IARE+GLSRPHFYRLFR+QTGVTP+LY+NTL+ME+ALDALVATE+PIADIGF Sbjct: 181 CAEIELDDIARESGLSRPHFYRLFRSQTGVTPNLYLNTLLMERALDALVATESPIADIGF 240 Query: 239 DLGFSSQSGFTRFFAANVGMAPTDYRRAAKVLR 271 DLGFSSQSGFTRFFA NVGMAPTDYRRAAKVLR Sbjct: 241 DLGFSSQSGFTRFFAGNVGMAPTDYRRAAKVLR 273 >ref|NP_770026.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48651.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 275 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 225/274 (82%), Positives = 241/274 (87%), Gaps = 3/274 (1%) Query: 1 MSRALAVFHGRFGRATVYQLNRPFNVHAHREGHLIFHVGGTPAQIDVSEQRLLLKDDTVV 60 MSRALAVFHGRFGRATVYQLNRPFN+HAHREGHLIFHVGG PA IDVS L + +VV Sbjct: 1 MSRALAVFHGRFGRATVYQLNRPFNIHAHREGHLIFHVGGMPACIDVSAGHYDLNETSVV 60 Query: 61 AVNPWEPHNFLPTDMDHGAIFFVLYVNAEWFAPQPATAQGLRFGRTFFPRTEALDRLIRR 120 AVNPWEPHNFLPTD+D GAIFFVLYVN EWFAP + LRFGRT F RT ALD+ IRR Sbjct: 61 AVNPWEPHNFLPTDLDGGAIFFVLYVNPEWFAPDASGTDRLRFGRTQFKRTVALDKHIRR 120 Query: 121 TAALVCGAPSLRSLDCELRQLIDSCYEESWQAAQ---DARAAAAVTDFRVRKSIKLMSES 177 TAALVCGAPSL SLD ELR+LID CY+ESWQ A+ DARA+ AVTDFRVRK IKLMSES Sbjct: 121 TAALVCGAPSLSSLDSELRRLIDICYDESWQQAETVRDARASGAVTDFRVRKCIKLMSES 180 Query: 178 PGAEIELDAIAREAGLSRPHFYRLFRTQTGVTPHLYMNTLIMEQALDALVATETPIADIG 237 PGAE+ELD IARE+GLSRPHFYRLFR QTGVTP+LY+NTLIMEQAL+ALVA+E PIADIG Sbjct: 181 PGAEMELDTIARESGLSRPHFYRLFRVQTGVTPNLYLNTLIMEQALEALVASEAPIADIG 240 Query: 238 FDLGFSSQSGFTRFFAANVGMAPTDYRRAAKVLR 271 FDLGFSSQSGFTRFFAANVGMAPTDYRRAAKVLR Sbjct: 241 FDLGFSSQSGFTRFFAANVGMAPTDYRRAAKVLR 274 >ref|YP_001206729.1| AraC/XylS family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL78512.1| putative Transcriptional regulatory protein, AraC/XylS family [Bradyrhizobium sp. ORS 278] Length = 273 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 220/273 (80%), Positives = 243/273 (89%), Gaps = 3/273 (1%) Query: 1 MSRALAVFHGRFGRATVYQLNRPFNVHAHREGHLIFHVGGTPAQIDVSEQRLLLKDDTVV 60 MSRALAVFH RFGRATVYQLNRPFNVHAHREGHLIFHVGG+PA IDV ++R ++++ ++V Sbjct: 1 MSRALAVFHARFGRATVYQLNRPFNVHAHREGHLIFHVGGSPAHIDVCDRRHVIEEQSIV 60 Query: 61 AVNPWEPHNFLPTDMDHGAIFFVLYVNAEWFAPQPATAQGLRFGRTFFPRTEALDRLIRR 120 AVNPWEPHNF+PTD D+GAIFFVLYVN EWFAP PA +GL+FGRT F RT ALDR IRR Sbjct: 61 AVNPWEPHNFVPTDTDNGAIFFVLYVNGEWFAP-PAAREGLKFGRTCFRRTAALDRCIRR 119 Query: 121 TAALVCGAPSLRSLDCELRQLIDSCYEESWQAAQ--DARAAAAVTDFRVRKSIKLMSESP 178 TAALVCGAPSL LD ELRQLIDSCYEESW+ + R +A VTDFRVRK IKLMS+SP Sbjct: 120 TAALVCGAPSLGCLDGELRQLIDSCYEESWRVTELMPERPSAEVTDFRVRKCIKLMSDSP 179 Query: 179 GAEIELDAIAREAGLSRPHFYRLFRTQTGVTPHLYMNTLIMEQALDALVATETPIADIGF 238 AEIELD IARE+GLSRPHFYRLFR+QTGVTP+LY+NTL+ME+ALDALVATE PIADIGF Sbjct: 180 CAEIELDHIARESGLSRPHFYRLFRSQTGVTPNLYLNTLLMERALDALVATEAPIADIGF 239 Query: 239 DLGFSSQSGFTRFFAANVGMAPTDYRRAAKVLR 271 DLGFSSQSGFTRFFA NVGMAPTDYRRAAKVLR Sbjct: 240 DLGFSSQSGFTRFFAGNVGMAPTDYRRAAKVLR 272 >ref|ZP_01746887.1| transcriptional regulatory protein [Sagittula stellata E-37] gb|EBA07439.1| transcriptional regulatory protein [Sagittula stellata E-37] Length = 276 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 127/281 (45%), Positives = 163/281 (58%), Gaps = 18/281 (6%) Query: 1 MSRALAVFHGRFGRATVYQLNRPFNVHAHREGHLIFHVGGTPAQIDVSEQRLLLKDDTVV 60 MS +LAVFHGRFGR +Y ++R H HREGHLIFH+ G P QIDV+ ++ L V Sbjct: 1 MSDSLAVFHGRFGRVCLYNMDRSMVPHGHREGHLIFHLQGPPGQIDVNGRKWPLAPGQGV 60 Query: 61 AVNPWEPHNFLPTDMDHGAIFFVLYVNAEWFAPQPATAQG-LRFGRTFFPRTEALDRLIR 119 AV+PW H + P + + VLY+ WF A L FGR T+ L RLI Sbjct: 61 AVSPWLSHFYQPVHLCEPTLALVLYIRPSWFLDVSRRASASLAFGRVGIEVTDHLARLIY 120 Query: 120 RTAALVCGAPSLRSLDCE-------LRQLIDSCYEESWQ----AAQDARAAAAVTDFRVR 168 TA ++ DCE L L YE+SWQ A DFR+R Sbjct: 121 GTAQ------AMLEEDCEDVLIEDRLCDLTRVAYEQSWQWTPRGADFTGPDMPRRDFRIR 174 Query: 169 KSIKLMSESPGAEIELDAIAREAGLSRPHFYRLFRTQTGVTPHLYMNTLIMEQALDALVA 228 K++K + E G +E+D +ARE GLSRPHFY+LFR Q G+TP+LY+N L MEQA+D L Sbjct: 175 KALKYLQEGLGEALEMDRVAREVGLSRPHFYKLFRAQVGLTPNLYLNALRMEQAIDMLAT 234 Query: 229 TETPIADIGFDLGFSSQSGFTRFFAANVGMAPTDYRRAAKV 269 +E +ADIGFDLGFSSQ+ F+RFF N + P+ YRR+ V Sbjct: 235 SEDGVADIGFDLGFSSQASFSRFFIGNGVVPPSAYRRSVHV 275 >ref|ZP_07375942.1| transcriptional regulatory protein [Ahrensia sp. R2A130] gb|EFL87836.1| transcriptional regulatory protein [Ahrensia sp. R2A130] Length = 292 Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 114/274 (41%), Positives = 163/274 (59%), Gaps = 5/274 (1%) Query: 1 MSRALAVFHGRFGRATVYQLNRPFNVHAHREGHLIFHVGGTPAQIDVSEQRLLLKDDTVV 60 MS A++V HG FGRA +Y+L++P HAHRE HLIF + G ++ + ++ + + V Sbjct: 18 MSGAISVHHGEFGRAALYELDKPIITHAHREAHLIFWLDGGAGRVRIGDEVHPIDRNRGV 77 Query: 61 AVNPWEPHNFLPTDMDHGAIFFVLYVNAEWFAPQPATAQ-GLRFGRTFFPRTEALDRLIR 119 AV+PW PHNF D + I LYV WF Q + L FG T + + Sbjct: 78 AVSPWAPHNFEIEDPANPLITLTLYVKPNWFLEQNRSNDFALAFGSARIDVTTVVSSWVN 137 Query: 120 RTAALVCGAPSLRSLDCELRQLIDSCYEESWQAAQD----ARAAAAVTDFRVRKSIKLMS 175 R +L+ S D L + CYE+SW Q +R DFRVR+SI LM Sbjct: 138 RLTSLLMDQESSDLFDPFLFETTRQCYEQSWTCGQRDDTASRFGRGFLDFRVRRSIGLMQ 197 Query: 176 ESPGAEIELDAIAREAGLSRPHFYRLFRTQTGVTPHLYMNTLIMEQALDALVATETPIAD 235 + ++++D +A+E+GLSRPHF++LF+ Q G+TP+LY+NTL EQA+D L+ T + + D Sbjct: 198 QRFREDMQIDWLAKESGLSRPHFFKLFKKQMGITPNLYLNTLRAEQAIDDLMGTRSTVTD 257 Query: 236 IGFDLGFSSQSGFTRFFAANVGMAPTDYRRAAKV 269 I +DLGF+SQ+ FTRFF NVG+ P+DYRR A + Sbjct: 258 IAYDLGFASQASFTRFFTTNVGIPPSDYRRVAHI 291