BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0161.0025.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772852.1| transcriptional regulator [Bradyrhizobium japon... 491 e-137 ref|YP_001241812.1| AraC family transcriptional regulator [Brady... 491 e-137 ref|YP_001207376.1| AraC/XylS family transcription factor [Brady... 488 e-136 ref|YP_001833589.1| AraC family transcriptional regulator [Beije... 252 5e-65 ref|YP_984051.1| helix-turn-helix domain-containing protein [Pol... 195 1e-47 >ref|NP_772852.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51477.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 368 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 242/327 (74%), Positives = 274/327 (83%) Query: 3 IESVAGKMSDTVHSLSTNGLTPKRQIQRWSDALTDLCGQFDVDALEGSSLEARVNFTTVS 62 I+ VAG MSDT+H+LST G+TPKRQIQ W D LT LCG FDVD LE SSLE R+++TTVS Sbjct: 40 IKPVAGLMSDTIHTLSTTGMTPKRQIQSWIDGLTSLCGHFDVDPLEASSLEGRIDYTTVS 99 Query: 63 RLKLCQIEASQHRIAHTISRIKLSEHPYIKIVFQTHGVSHFEQDGLHFDIMPGDCFAYDV 122 RLKLCQIE SQHRIAHT++R K +EHPYIKI FQT+GVS+FEQ+G H +I PGD AYDV Sbjct: 100 RLKLCQIEVSQHRIAHTLARAKANEHPYIKIHFQTYGVSYFEQEGRHIEINPGDIIAYDV 159 Query: 123 SCPHTIISPSLTRHEVVIVPKDLLKERGFQLSKMAPCKLSARNGTGRIAYDFVHAAFGEA 182 SCPH+IISP+ TRH+VVIVPK LL++RGF +M CKLSA+ GTGRIA+DFVHA F EA Sbjct: 160 SCPHSIISPAFTRHDVVIVPKALLRDRGFPSQRMPACKLSAKTGTGRIAHDFVHATFDEA 219 Query: 183 PTLTPVNAVGVADALIDLLLLPLRETGAMFDRGSAEATYVRAQGFIREHLRDPDLCIDRI 242 L+ +AVGVAD+LIDLLLLPLRE MFDR EA YVRAQ FIREHLRDPDLCID+I Sbjct: 220 AKLSANSAVGVADSLIDLLLLPLREADTMFDRVGPEAMYVRAQFFIREHLRDPDLCIDQI 279 Query: 243 SAALGCSKRYLHMLFSDRGMTVSDYIWKARLQNCRQELESQNGKTITDVAFSWGFSSSSH 302 SA LGCSKRYLHMLFS+RG TVSDYIW+ARLQNCRQELE+ GKTITDVAFSWGFSSSSH Sbjct: 280 SAELGCSKRYLHMLFSERGTTVSDYIWQARLQNCRQELEAHAGKTITDVAFSWGFSSSSH 339 Query: 303 FSRVFRKYFGIAPSSVHKGLHGGMPAD 329 FSRVFRKYFG+ PSS+HKG A+ Sbjct: 340 FSRVFRKYFGVVPSSIHKGQQSAAAAN 366 >ref|YP_001241812.1| AraC family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ37906.1| transcriptional regulator, AraC family [Bradyrhizobium sp. BTAi1] Length = 315 Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust. Identities = 238/311 (76%), Positives = 273/311 (87%) Query: 10 MSDTVHSLSTNGLTPKRQIQRWSDALTDLCGQFDVDALEGSSLEARVNFTTVSRLKLCQI 69 MSDT+ SLST+G +PK QIQRWSDALTDLCG+FD+D LEG+S E R+NFTTVSRLKLCQI Sbjct: 1 MSDTIRSLSTSGFSPKSQIQRWSDALTDLCGRFDIDPLEGASFEGRINFTTVSRLKLCQI 60 Query: 70 EASQHRIAHTISRIKLSEHPYIKIVFQTHGVSHFEQDGLHFDIMPGDCFAYDVSCPHTII 129 EASQHRIAHT +R + +EHPYIKI+FQT+GVS+FEQDG +I PGDC AYDVS PHTI+ Sbjct: 61 EASQHRIAHTYARARDTEHPYIKILFQTYGVSYFEQDGRQIEIGPGDCLAYDVSSPHTIV 120 Query: 130 SPSLTRHEVVIVPKDLLKERGFQLSKMAPCKLSARNGTGRIAYDFVHAAFGEAPTLTPVN 189 SP+LTRH+VVIVPK+LL+ERGF+ KM KLSAR+GTGRIA+D HAAF EA L+P + Sbjct: 121 SPALTRHDVVIVPKELLQERGFRSEKMPAYKLSARSGTGRIAHDVTHAAFDEATRLSPNS 180 Query: 190 AVGVADALIDLLLLPLRETGAMFDRGSAEATYVRAQGFIREHLRDPDLCIDRISAALGCS 249 A VA++LIDLLLLPLRE M DR EA Y+RAQ FIREHLRDPDLCID+ISAALGC+ Sbjct: 181 AASVAESLIDLLLLPLREADRMLDRAGPEAVYIRAQAFIREHLRDPDLCIDQISAALGCT 240 Query: 250 KRYLHMLFSDRGMTVSDYIWKARLQNCRQELESQNGKTITDVAFSWGFSSSSHFSRVFRK 309 KRYLHM+FSDRGMTVSDYIW+ARLQ+CRQELE+Q+GKTITDVAFSWGFSSSSHFSRVFRK Sbjct: 241 KRYLHMVFSDRGMTVSDYIWRARLQHCRQELETQSGKTITDVAFSWGFSSSSHFSRVFRK 300 Query: 310 YFGIAPSSVHK 320 YFG+ PSSVHK Sbjct: 301 YFGVVPSSVHK 311 >ref|YP_001207376.1| AraC/XylS family transcription factor [Bradyrhizobium sp. ORS 278] emb|CAL79159.1| putative Transcriptional regulatory protein AraC/XylS family [Bradyrhizobium sp. ORS 278] Length = 340 Score = 488 bits (1255), Expect = e-136, Method: Compositional matrix adjust. Identities = 237/312 (75%), Positives = 270/312 (86%) Query: 9 KMSDTVHSLSTNGLTPKRQIQRWSDALTDLCGQFDVDALEGSSLEARVNFTTVSRLKLCQ 68 KMSDT+ SL+T+G +PK QIQRWSDALTDLCG+FDVD LEG+S E R+NFTTVSRLKLCQ Sbjct: 23 KMSDTIRSLTTSGFSPKSQIQRWSDALTDLCGRFDVDPLEGASFEGRINFTTVSRLKLCQ 82 Query: 69 IEASQHRIAHTISRIKLSEHPYIKIVFQTHGVSHFEQDGLHFDIMPGDCFAYDVSCPHTI 128 IEASQHRIAHT +R + HPYIKI+FQT+G S+FEQDG +I PGDC AYDVS PHTI Sbjct: 83 IEASQHRIAHTYARAQKVAHPYIKILFQTYGTSYFEQDGRQIEIGPGDCLAYDVSTPHTI 142 Query: 129 ISPSLTRHEVVIVPKDLLKERGFQLSKMAPCKLSARNGTGRIAYDFVHAAFGEAPTLTPV 188 ISP+LTRH+VVIVPK+LL+ERGF+ KM KLSAR+GTGRIA+D H+AF EA L+P Sbjct: 143 ISPALTRHDVVIVPKELLQERGFRSEKMPAYKLSARSGTGRIAHDVTHSAFDEATRLSPN 202 Query: 189 NAVGVADALIDLLLLPLRETGAMFDRGSAEATYVRAQGFIREHLRDPDLCIDRISAALGC 248 +A VA++LIDLLLLPLRE M DR EA Y+RAQ FIREHLRDPDLCID+ISAALGC Sbjct: 203 SAASVAESLIDLLLLPLREADRMLDRAGPEAVYIRAQAFIREHLRDPDLCIDQISAALGC 262 Query: 249 SKRYLHMLFSDRGMTVSDYIWKARLQNCRQELESQNGKTITDVAFSWGFSSSSHFSRVFR 308 +KRYLHM+FSDRGMTVSDYIW+ARLQ+CRQELE+Q GKTITDVAFSWGFSSSSHFSRVFR Sbjct: 263 TKRYLHMVFSDRGMTVSDYIWRARLQHCRQELETQGGKTITDVAFSWGFSSSSHFSRVFR 322 Query: 309 KYFGIAPSSVHK 320 KYFG+ PSSVHK Sbjct: 323 KYFGVVPSSVHK 334 >ref|YP_001833589.1| AraC family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gb|ACB96100.1| transcriptional regulator, AraC family [Beijerinckia indica subsp. indica ATCC 9039] Length = 316 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 137/316 (43%), Positives = 186/316 (58%), Gaps = 7/316 (2%) Query: 10 MSDTVHSLSTNGLTPKRQIQRWSDALTDLCGQFDVDALEGSSLEARVNFTTVSRLKLCQI 69 M + SL ++ + I W +AL LCG+ V+ + ++A N+ L+LCQI Sbjct: 1 MRFKIGSLDSSLVPHSHSINYWEEALAALCGRLQVEIVGDDRIDAFANYVDFDGLRLCQI 60 Query: 70 EASQHRIAHTISRIKLSEHPYIKIVFQTHGVSHFEQDGLHFDIMPGDCFAYDVSCPHTII 129 + S HR+A S + SEHP +K+ FQT G S FEQ + PGDC AYDV+ PH I Sbjct: 61 KTSGHRVALPRSWLGQSEHPVVKVHFQTKGTSIFEQGQTRIVLSPGDCLAYDVAQPHLIS 120 Query: 130 SPSLTRHEVVIVPKDLLKERGFQLSKMAPCKLSARNGTGRIAYDFVHAAFGEAPTLTPVN 189 S T HEV I+PK L ER + +S +G R +F+ +A +A TL+ + Sbjct: 121 SLEYTEHEVAIIPKKSLMERRIAARQFPAVHMSTEHGDIRFVRNFLLSALRQASTLSNKS 180 Query: 190 AVGVADALIDLLLLPL---RETGAMFDRGSAEATYVRAQGFIREHLRDPDLCIDRISAAL 246 +ADAL+D+L++PL R G DR E +RAQ +IR++L D DL IDRI+ AL Sbjct: 181 IKPIADALLDVLIIPLSEGRPQGVSSDR--RETLRIRAQDYIRQNLGDTDLTIDRIARAL 238 Query: 247 GCSKRYLHMLFSDRGMTVSDYIWKARLQNCRQELES--QNGKTITDVAFSWGFSSSSHFS 304 GCSKRYLHM+F D G+TVS +IW RL C +L+ Q+ KTIT+VA WGFSS SHFS Sbjct: 239 GCSKRYLHMIFMDEGITVSRFIWNERLDRCFYDLKDAHQSNKTITEVAIEWGFSSPSHFS 298 Query: 305 RVFRKYFGIAPSSVHK 320 R F+ +G PS+ K Sbjct: 299 RSFKDRYGFTPSTALK 314 >ref|YP_984051.1| helix-turn-helix domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM39130.1| transcriptional regulator, AraC family [Polaromonas naphthalenivorans CJ2] Length = 340 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 104/307 (33%), Positives = 170/307 (55%), Gaps = 3/307 (0%) Query: 17 LSTNGLTPKRQIQRWSDALTDLCGQFDVDALEGSSLEARVNFTTVSRLKLCQIEASQHRI 76 LST+ L + W ++ L G D D S + + + + + ++EA++HR+ Sbjct: 7 LSTDDLASTERALAWEHWMSGLFGGLDSDLYGDSVFDGHIATSHAGDVVMTRLEANRHRV 66 Query: 77 AHTISRIKLSEHPYIKIVFQTHGVSHFEQDGLHFDIMPGDCFAYDVSCPHTIISPSLTRH 136 + + S+ Y+KI+ G + EQ G + PG YD + + + +P + H Sbjct: 67 MRSPGLARTSDMSYLKIIAPWQGNAALEQQGRQTWVRPGGWAIYDTTGSYEVANPERSLH 126 Query: 137 EVVIVPKDLLKERGFQLSKMAPCKLSARNGTGRIAYDFVHAAFGEAPTLTPVNAVGVADA 196 +V++P++ L ERG ++ + + +G R+A + + + F E P +TP A G D Sbjct: 127 LIVMLPREQLTERGLRIDALMGRLVGGSSGISRVALETMRSIFQELPLMTPEAARGAGDL 186 Query: 197 LIDLLLLPLRE-TGAMFDRGSAEATYVRAQGFIREHLRDPDLCIDRISAALGCSKRYLHM 255 +IDL+ L L+E G EA R + FI +HLRDPDL +DRI+ L CSKR+LH Sbjct: 187 VIDLVRLSLQELAGRTTATTQQEALKDRIRDFIGQHLRDPDLSLDRIAQVLNCSKRHLHN 246 Query: 256 LFSDRGMTVSDYIWKARLQNCRQELES--QNGKTITDVAFSWGFSSSSHFSRVFRKYFGI 313 F+D T+ YI + RLQ C ++L++ +TITD+AFSWGF++ +HFSRVFR++ G+ Sbjct: 247 AFADEEDTLGHYILRRRLQACMRDLKNPVHLPRTITDIAFSWGFNNGTHFSRVFREHAGL 306 Query: 314 APSSVHK 320 +PS + Sbjct: 307 SPSEFRR 313