BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0161.0012.p (184 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207360.1| hypothetical protein BRADO5467 [Bradyrhizobi... 250 5e-65 ref|YP_001241795.1| hypothetical protein BBta_5950 [Bradyrhizobi... 243 1e-62 ref|NP_772834.1| hypothetical protein bll6194 [Bradyrhizobium ja... 238 2e-61 ref|YP_779790.1| hypothetical protein RPE_0854 [Rhodopseudomonas... 219 1e-55 ref|ZP_08070749.1| hypothetical protein Met49242DRAFT_0136 [Meth... 208 3e-52 >ref|YP_001207360.1| hypothetical protein BRADO5467 [Bradyrhizobium sp. ORS 278] emb|CAL79143.1| conserved hypothetical protein; putative Rhodanese-like domain protein [Bradyrhizobium sp. ORS 278] Length = 186 Score = 250 bits (639), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 125/167 (74%), Positives = 137/167 (82%), Gaps = 1/167 (0%) Query: 18 VRAQDPPAEPEGYRTEDYRAPVPVTLAGARVLTTAEAEAIWRDKSAAFVDVLPRAPKP-N 76 VRA D EP+ YRTE YRAPVP TL GARVL+T E EAIWRDKSAAF+DVLPR PKP N Sbjct: 20 VRADDLVPEPDSYRTETYRAPVPTTLKGARVLSTRETEAIWRDKSAAFIDVLPRPPKPKN 79 Query: 77 LPAGTVWRERPHLNIPGSIWLPDTGYGKLAAPTEDYLRRGLVRASGGYATRLLVIYCQEN 136 LPAGTVWRE+P L+IPGSIWLPDTGYG LAA TEDYL+RGL +ASGG RLLV YC E+ Sbjct: 80 LPAGTVWREQPRLDIPGSIWLPDTGYGVLAAVTEDYLKRGLAQASGGDLGRLLVFYCLED 139 Query: 137 CWMSWNAAKRVLSYGYCNVAWYPEGTDGWERAKLPLADAEPEPREGE 183 CWMSWNAA+R L+YGY NVAWYP+GTDGW RA LPL +PEPR E Sbjct: 140 CWMSWNAARRALTYGYRNVAWYPDGTDGWARADLPLQQTQPEPRPEE 186 >ref|YP_001241795.1| hypothetical protein BBta_5950 [Bradyrhizobium sp. BTAi1] gb|ABQ37889.1| hypothetical protein BBta_5950 [Bradyrhizobium sp. BTAi1] Length = 187 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 121/165 (73%), Positives = 135/165 (81%), Gaps = 1/165 (0%) Query: 20 AQDPPAEPEGYRTEDYRAPVPVTLAGARVLTTAEAEAIWRDKSAAFVDVLPRAPKP-NLP 78 A D AEP GYRTE+YRAPVP TL GARVL+T+E EAIWR KSAAF+DVLPR PKP +LP Sbjct: 23 ADDLVAEPPGYRTENYRAPVPTTLNGARVLSTSETEAIWRTKSAAFIDVLPRPPKPKSLP 82 Query: 79 AGTVWRERPHLNIPGSIWLPDTGYGKLAAPTEDYLRRGLVRASGGYATRLLVIYCQENCW 138 GTVWRE+P L+IPGSIWLPDTGYG LAA TEDYL+RGL +ASGG R+LV YC E+CW Sbjct: 83 VGTVWREQPRLDIPGSIWLPDTGYGVLAAATEDYLKRGLAQASGGDLGRMLVFYCLEDCW 142 Query: 139 MSWNAAKRVLSYGYCNVAWYPEGTDGWERAKLPLADAEPEPREGE 183 MSWNAAKR L+YGY VAWYP+GTDGW RA LPL +PEPR E Sbjct: 143 MSWNAAKRALTYGYRAVAWYPDGTDGWARADLPLQQTQPEPRPEE 187 >ref|NP_772834.1| hypothetical protein bll6194 [Bradyrhizobium japonicum USDA 110] dbj|BAC51459.1| bll6194 [Bradyrhizobium japonicum USDA 110] Length = 185 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 115/161 (71%), Positives = 132/161 (81%), Gaps = 1/161 (0%) Query: 21 QDPPAEPEGYRTEDYRAPVPVTLAGARVLTTAEAEAIWRDKSAAFVDVLPRAPKP-NLPA 79 Q P EPEGYRT++YRAPVP TLAGARVLTTAEAEAIWRDKS AF+DV+PRAPKP NLP Sbjct: 22 QPEPFEPEGYRTDNYRAPVPATLAGARVLTTAEAEAIWRDKSGAFIDVMPRAPKPKNLPE 81 Query: 80 GTVWRERPHLNIPGSIWLPDTGYGKLAAPTEDYLRRGLVRASGGYATRLLVIYCQENCWM 139 GTVWR+ P NIPGS+WLPDTGYG L +DYL+RGL +AS G LLVIYC +CWM Sbjct: 82 GTVWRDAPRRNIPGSLWLPDTGYGNLPPAMDDYLQRGLAQASRGDKAALLVIYCLADCWM 141 Query: 140 SWNAAKRVLSYGYCNVAWYPEGTDGWERAKLPLADAEPEPR 180 SWNAA+R L+YGY N+AWYP+G+DGWERA LP + +PEPR Sbjct: 142 SWNAARRALAYGYSNIAWYPDGSDGWERAALPTDEGQPEPR 182 >ref|YP_779790.1| hypothetical protein RPE_0854 [Rhodopseudomonas palustris BisA53] gb|ABJ04810.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 210 Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 113/157 (71%), Positives = 127/157 (80%), Gaps = 1/157 (0%) Query: 26 EPEGYRTEDYRAPVPVTLAGARVLTTAEAEAIWRDKSAAFVDVLPRAPKPNLP-AGTVWR 84 EP GYRTE+YRA VP TL GARVL+TA+AEAIWR SA FVDV+PR PKP AGT+WR Sbjct: 44 EPAGYRTENYRAAVPATLRGARVLSTADAEAIWRAGSARFVDVMPRPPKPPGLPAGTLWR 103 Query: 85 ERPHLNIPGSIWLPDTGYGKLAAPTEDYLRRGLVRASGGYATRLLVIYCQENCWMSWNAA 144 ++P NIPGSIWLPDTGYG LAAPTE YLR GL RASGG R LV+YCQ +CWMSWNAA Sbjct: 104 DQPRHNIPGSIWLPDTGYGALAAPTEHYLRDGLARASGGDVARTLVLYCQADCWMSWNAA 163 Query: 145 KRVLSYGYCNVAWYPEGTDGWERAKLPLADAEPEPRE 181 KR L YGY N+AWYP+GTDGW+ A LPL +A+PE RE Sbjct: 164 KRALGYGYQNIAWYPQGTDGWQAAGLPLVEAQPELRE 200 >ref|ZP_08070749.1| hypothetical protein Met49242DRAFT_0136 [Methylocystis sp. ATCC 49242] gb|EFY01276.1| hypothetical protein Met49242DRAFT_0136 [Methylocystis sp. ATCC 49242] Length = 183 Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 105/184 (57%), Positives = 128/184 (69%), Gaps = 4/184 (2%) Query: 1 MIRLAATLAVMFVAASPVRAQDPPA--EPEGYRTEDYRAPVPVTLAGARVLTTAEAEAIW 58 M R LA+ +AA+ R + PP EPEGYR + YRAPVP TL GA V+ TA+A +W Sbjct: 1 MTRAFLFLAIC-LAATNARGEAPPRPREPEGYRLDAYRAPVPATLTGATVIDTAKAFDMW 59 Query: 59 RDKSAAFVDVLPRAPKPN-LPAGTVWRERPHLNIPGSIWLPDTGYGKLAAPTEDYLRRGL 117 + K+A F+D LP APKP LP VWRE+P +IPGS+WLPDTGYG+LA T+ YL +GL Sbjct: 60 KAKAAVFIDALPHAPKPEGLPKSAVWREQPRFDIPGSVWLPDTGYGELAEATQRYLEKGL 119 Query: 118 VRASGGYATRLLVIYCQENCWMSWNAAKRVLSYGYCNVAWYPEGTDGWERAKLPLADAEP 177 RA+ + LV YC ENCWMSWNAAKR +S GY NV WYP+GTDGW K PL + +P Sbjct: 120 ARATASDKAKPLVFYCLENCWMSWNAAKRAMSLGYANVFWYPQGTDGWAAQKHPLEERKP 179 Query: 178 EPRE 181 EPRE Sbjct: 180 EPRE 183