BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0161.0011.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772835.1| methanol oxidation protein [Bradyrhizobium japo... 461 e-128 ref|YP_001207361.1| putative methanol oxidation protein, mxaJ-li... 451 e-125 ref|YP_001241796.1| putative methanol oxidation protein [Bradyrh... 444 e-123 ref|YP_779789.1| extracellular solute-binding protein [Rhodopseu... 400 e-109 ref|YP_002361896.1| family 3 extracellular solute-binding protei... 338 5e-91 >ref|NP_772835.1| methanol oxidation protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51460.1| bll6196 [Bradyrhizobium japonicum USDA 110] Length = 339 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/287 (76%), Positives = 251/287 (87%), Gaps = 1/287 (0%) Query: 7 RPVLLALVGFIACLAGRDIARAQVNDQGELSIELIDARVLRICADPRNLPFSNDKGEGFE 66 R L L G +A A +A AQ ++ G+LS EL+D +VLR+CADPRNLPFSN+KGEGFE Sbjct: 54 RRGLFLLWGLVASCALGGVAMAQTSETGDLSFELVDPKVLRVCADPRNLPFSNEKGEGFE 113 Query: 67 NKIGELLAGKLQKKLDYMFFPQATGFVRMTLSAHRCDVIMGFPQGDDLAQGTNPYYRTAY 126 NK+ EL A KL KKLDY+FFPQATGFVRMTL AHRCDVIMGFPQGDDL QGTNPYYRT Y Sbjct: 114 NKLAELFADKLGKKLDYVFFPQATGFVRMTLGAHRCDVIMGFPQGDDLVQGTNPYYRTTY 173 Query: 127 AIVAKPGSGLDEVTTLEDQRLKGKHIGIVAGTPPATNMAINGLMTNAKPYPLMIDTRYDS 186 A+VAK GSGL++V TLED RLKGKH+GIVAGTPPATNMAI GLM +AKPYPLMIDTR+D+ Sbjct: 174 ALVAKAGSGLEDVDTLEDTRLKGKHVGIVAGTPPATNMAIAGLMGDAKPYPLMIDTRFDN 233 Query: 187 SAEAMMNDLAKGEIDAGILWGPMAGFYAKKANPPLHITPLVKETTGPKLIYRIGMGVRAS 246 SA+AM++DL+ G+IDAG+LWGPMAGFYAKKA LH+TPLVKETTGPKL+YRIGMGVR + Sbjct: 234 SAQAMIDDLSAGKIDAGVLWGPMAGFYAKKAG-SLHVTPLVKETTGPKLVYRIGMGVRPA 292 Query: 247 DQNWKRQLNRLIQENQPEINKILLDYGVPLLDENDRPIGPETATKSP 293 DQNWKRQLN+LIQENQ EINKILLD+GVPLLDE+DRP+G ETA K+P Sbjct: 293 DQNWKRQLNKLIQENQGEINKILLDFGVPLLDESDRPLGAETAKKAP 339 >ref|YP_001207361.1| putative methanol oxidation protein, mxaJ-like protein [Bradyrhizobium sp. ORS 278] emb|CAL79144.1| Putative methanol oxidation protein, mxaJ homolog [Bradyrhizobium sp. ORS 278] Length = 291 Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/284 (75%), Positives = 244/284 (85%), Gaps = 5/284 (1%) Query: 13 LVGFIACLAGRDI-----ARAQVNDQGELSIELIDARVLRICADPRNLPFSNDKGEGFEN 67 L+G +A AG + + AQ ND +LSIEL+D +VLR+CADPRNLPFSN+KGEGFEN Sbjct: 7 LIGSLAVAAGLTLLGPVASYAQSNDGLDLSIELVDPKVLRVCADPRNLPFSNEKGEGFEN 66 Query: 68 KIGELLAGKLQKKLDYMFFPQATGFVRMTLSAHRCDVIMGFPQGDDLAQGTNPYYRTAYA 127 K+ + LA KLQKK+DY FFPQATGFVRMTL +HRCDVIMGFPQGDDL Q T+PYYRTAYA Sbjct: 67 KLADFLAAKLQKKVDYTFFPQATGFVRMTLGSHRCDVIMGFPQGDDLVQSTSPYYRTAYA 126 Query: 128 IVAKPGSGLDEVTTLEDQRLKGKHIGIVAGTPPATNMAINGLMTNAKPYPLMIDTRYDSS 187 IV KPGS L +VTTLED +LKGKHIGIVAGTPPATNMA+ GLMT AKPYPLMIDTR DSS Sbjct: 127 IVTKPGSDLADVTTLEDAKLKGKHIGIVAGTPPATNMALAGLMTTAKPYPLMIDTRVDSS 186 Query: 188 AEAMMNDLAKGEIDAGILWGPMAGFYAKKANPPLHITPLVKETTGPKLIYRIGMGVRASD 247 AEAM+NDL GEIDAG+LWGPMAG+YAK+A+P LH+TPLVKET+GPKLIYRI MGVR +D Sbjct: 187 AEAMINDLKSGEIDAGVLWGPMAGYYAKQASPQLHVTPLVKETSGPKLIYRIAMGVRGAD 246 Query: 248 QNWKRQLNRLIQENQPEINKILLDYGVPLLDENDRPIGPETATK 291 QNW+RQLN+LIQENQ EINKILLD+GVPLLDE++ I E ATK Sbjct: 247 QNWRRQLNKLIQENQGEINKILLDFGVPLLDESNHLITAEAATK 290 >ref|YP_001241796.1| putative methanol oxidation protein [Bradyrhizobium sp. BTAi1] gb|ABQ37890.1| amino acid ABC transporter substrate-binding protein, PAAT family [Bradyrhizobium sp. BTAi1] Length = 291 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/273 (77%), Positives = 236/273 (86%) Query: 19 CLAGRDIARAQVNDQGELSIELIDARVLRICADPRNLPFSNDKGEGFENKIGELLAGKLQ 78 L G + AQ ND +LSIEL+D +VLR+CADPRNLPFSN+KGEGFENK+ E LA KLQ Sbjct: 18 SLLGPVASHAQSNDGLDLSIELVDPKVLRVCADPRNLPFSNEKGEGFENKLAEFLAVKLQ 77 Query: 79 KKLDYMFFPQATGFVRMTLSAHRCDVIMGFPQGDDLAQGTNPYYRTAYAIVAKPGSGLDE 138 KK+DY FFPQATGFVRMTL +HRCDVIMGFPQGDDL Q T+PYYRTAYAIV KPGS L + Sbjct: 78 KKVDYTFFPQATGFVRMTLGSHRCDVIMGFPQGDDLVQSTSPYYRTAYAIVTKPGSDLAD 137 Query: 139 VTTLEDQRLKGKHIGIVAGTPPATNMAINGLMTNAKPYPLMIDTRYDSSAEAMMNDLAKG 198 VTTLED +LKGKHIGIVAGTPPATNMA+ GLM AKPYPLMIDTR DSSAEAM+NDL G Sbjct: 138 VTTLEDPKLKGKHIGIVAGTPPATNMALAGLMPTAKPYPLMIDTRVDSSAEAMINDLKSG 197 Query: 199 EIDAGILWGPMAGFYAKKANPPLHITPLVKETTGPKLIYRIGMGVRASDQNWKRQLNRLI 258 EIDAG+LWGPMAG+YAK+ANP LH+TPLVKET+GPKLIYRI MGVR +DQNW+RQLN+LI Sbjct: 198 EIDAGVLWGPMAGYYAKQANPQLHVTPLVKETSGPKLIYRIAMGVRGADQNWRRQLNKLI 257 Query: 259 QENQPEINKILLDYGVPLLDENDRPIGPETATK 291 QENQ EINKILLD+GVPLLDE++ I E A K Sbjct: 258 QENQGEINKILLDFGVPLLDESNHLITAEAAAK 290 >ref|YP_779789.1| extracellular solute-binding protein [Rhodopseudomonas palustris BisA53] gb|ABJ04809.1| extracellular solute-binding protein, family 3 [Rhodopseudomonas palustris BisA53] Length = 309 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 188/281 (66%), Positives = 225/281 (80%), Gaps = 6/281 (2%) Query: 19 CLAGRDIARAQVN------DQGELSIELIDARVLRICADPRNLPFSNDKGEGFENKIGEL 72 + G +A AQ+ D G+ +IELID +V+R+CADP NLPFSN +GEG ENK+ EL Sbjct: 29 AMLGAGVASAQMQPPLPNQDVGDPTIELIDPKVMRVCADPHNLPFSNQQGEGLENKLAEL 88 Query: 73 LAGKLQKKLDYMFFPQATGFVRMTLSAHRCDVIMGFPQGDDLAQGTNPYYRTAYAIVAKP 132 A KL KKLDY +FPQATGFVRMTL+AHRCDVIMGFPQGDDL Q TNPYYR+AYA+VAKP Sbjct: 89 FAAKLNKKLDYAYFPQATGFVRMTLAAHRCDVIMGFPQGDDLVQNTNPYYRSAYALVAKP 148 Query: 133 GSGLDEVTTLEDQRLKGKHIGIVAGTPPATNMAINGLMTNAKPYPLMIDTRYDSSAEAMM 192 GS L V +L D RLKGKH+G+VAGTPPA+NM+ NGLM AK YPL++DTR +SSA AM+ Sbjct: 149 GSDLAGVESLADPRLKGKHLGVVAGTPPASNMSANGLMAGAKAYPLVVDTRVESSAAAMV 208 Query: 193 NDLAKGEIDAGILWGPMAGFYAKKANPPLHITPLVKETTGPKLIYRIGMGVRASDQNWKR 252 D+ G ID G+LWGPMAG+YAK+++PPL +TPL+KE GP++ +RIGMGVR +DQNWKR Sbjct: 209 KDIVAGTIDGGVLWGPMAGYYAKQSDPPLQVTPLLKERGGPQMSFRIGMGVRPADQNWKR 268 Query: 253 QLNRLIQENQPEINKILLDYGVPLLDENDRPIGPETATKSP 293 QLNRLIQENQ EIN+ILLDYGVPLLD+NDR I E P Sbjct: 269 QLNRLIQENQGEINRILLDYGVPLLDDNDRLITAERIADKP 309 >ref|YP_002361896.1| family 3 extracellular solute-binding protein [Methylocella silvestris BL2] gb|ACK50534.1| extracellular solute-binding protein family 3 [Methylocella silvestris BL2] Length = 282 Score = 338 bits (868), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 162/274 (59%), Positives = 202/274 (73%), Gaps = 2/274 (0%) Query: 10 LLALVGFIACLAGRDIARAQVNDQGELSIELIDARVLRICADPRNLPFSNDKGEGFENKI 69 L LV + A RA+ D +IEL+D VLR+CADPR+LPFSN+ GEGFENKI Sbjct: 8 FLLLVALSSAAAFGLEVRAEGADDA--AIELVDPDVLRVCADPRDLPFSNEAGEGFENKI 65 Query: 70 GELLAGKLQKKLDYMFFPQATGFVRMTLSAHRCDVIMGFPQGDDLAQGTNPYYRTAYAIV 129 +LLA KL K + Y+++P TGF+R TL+AHRCDV+MG PQGDD+ Q TNPYYR +YA+V Sbjct: 66 ADLLAQKLGKSVAYVYYPNTTGFIRNTLNAHRCDVVMGIPQGDDIVQVTNPYYRASYAVV 125 Query: 130 AKPGSGLDEVTTLEDQRLKGKHIGIVAGTPPATNMAINGLMTNAKPYPLMIDTRYDSSAE 189 K GS L+ V +L D RLKGKHIGIVAGTPPAT +A+NGL+ N K Y L++DTR D+ Sbjct: 126 TKKGSDLESVESLSDPRLKGKHIGIVAGTPPATIIALNGLLPNIKSYALVVDTRADAPPV 185 Query: 190 AMMNDLAKGEIDAGILWGPMAGFYAKKANPPLHITPLVKETTGPKLIYRIGMGVRASDQN 249 M+ DL G+ID +LWGP+AG +AK A PL TPL+ E GP+++YR+GMGVR SDQ Sbjct: 186 EMIKDLEAGDIDIAVLWGPIAGNFAKNAKTPLVATPLLLEKIGPRMVYRMGMGVRHSDQE 245 Query: 250 WKRQLNRLIQENQPEINKILLDYGVPLLDENDRP 283 WKR LN+ I ENQ EI+ IL +YGVPLLDEND+P Sbjct: 246 WKRTLNKFIAENQTEIDAILTNYGVPLLDENDKP 279