BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0161.0006.p         (155 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772839.1| ABC transporter substrate-binding protein [Brad...   206   1e-51
ref|YP_001241800.1| putative ABC transporter substrate-binding p...   202   1e-50
ref|YP_001207365.1| putative ABC transporter substrate-binding p...   201   3e-50
emb|CAJ01648.1| abc transporter substrate-binding protein, simil...   169   1e-40
ref|ZP_08072203.1| ABC transporter substrate-binding protein [Me...   156   9e-37

>ref|NP_772839.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum
           USDA 110]
 dbj|BAC51464.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum
           USDA 110]
          Length = 327

 Score =  206 bits (523), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/139 (72%), Positives = 120/139 (86%)

Query: 6   RTVLAAAVLAVMQFGTSCYAQTIRVAAQKTGTLAWELAVIRSHGLDKKANLSIDVVELAS 65
           RT+  A  LA+ Q  +   A TIR+A QKTGT +WELA IR+ GLDK+A+LS++V ELAS
Sbjct: 7   RTLALAVTLALTQVASVRAADTIRLAVQKTGTFSWELAAIRAGGLDKEADLSLEVTELAS 66

Query: 66  PEAGKIALRAGTADVMVSDWPWVSRERSLGAKLQFYPYSSALGAVMVPASSPVKTLADLK 125
           PEAGKIALRAG+AD+++SDW WVSRER+LGAKL FYPYSSALGAVMVPA+SP+KTLADLK
Sbjct: 67  PEAGKIALRAGSADIILSDWLWVSRERALGAKLTFYPYSSALGAVMVPAASPIKTLADLK 126

Query: 126 GRKLAIAGGAIDKNWLLLQ 144
           GRKLA+ GGAIDK+WLLLQ
Sbjct: 127 GRKLAVGGGAIDKSWLLLQ 145


>ref|YP_001241800.1| putative ABC transporter substrate-binding protein [Bradyrhizobium
           sp. BTAi1]
 gb|ABQ37894.1| putative ABC transporter (substrate-binding protein)
           [Bradyrhizobium sp. BTAi1]
          Length = 331

 Score =  202 bits (515), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/122 (78%), Positives = 111/122 (90%)

Query: 23  CYAQTIRVAAQKTGTLAWELAVIRSHGLDKKANLSIDVVELASPEAGKIALRAGTADVMV 82
           C  +T++VA QKTGT AWELAVIR+H LDK+A++SID VELASPEAGKIALRAG AD+MV
Sbjct: 28  CATETVKVAVQKTGTFAWELAVIRAHQLDKQADISIDAVELASPEAGKIALRAGNADIMV 87

Query: 83  SDWPWVSRERSLGAKLQFYPYSSALGAVMVPASSPVKTLADLKGRKLAIAGGAIDKNWLL 142
           SDW WVSRER+LGAKL F PYSSALGAVMVPA+SP+KTL+DLKGRKLA+AGG +DK+WLL
Sbjct: 88  SDWLWVSRERALGAKLTFTPYSSALGAVMVPANSPIKTLSDLKGRKLAVAGGPLDKSWLL 147

Query: 143 LQ 144
           LQ
Sbjct: 148 LQ 149


>ref|YP_001207365.1| putative ABC transporter substrate-binding protein [Bradyrhizobium
           sp. ORS 278]
 emb|CAL79148.1| putative ABC transporter (substrate-binding protein)
           [Bradyrhizobium sp. ORS 278]
          Length = 326

 Score =  201 bits (511), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/139 (71%), Positives = 117/139 (84%)

Query: 6   RTVLAAAVLAVMQFGTSCYAQTIRVAAQKTGTLAWELAVIRSHGLDKKANLSIDVVELAS 65
           R  +A    A++   TS  A+T++VA QKTGT AWELAVIR+H LD++A + ID VELAS
Sbjct: 6   RLFIAIIACALLPLSTSRAAETVKVAVQKTGTFAWELAVIRAHELDQQAGILIDSVELAS 65

Query: 66  PEAGKIALRAGTADVMVSDWPWVSRERSLGAKLQFYPYSSALGAVMVPASSPVKTLADLK 125
           PEAGKIALRAG AD+MVSDW WVSRER+LGA+L F PYSSALGAVMVPASSP+KTLADLK
Sbjct: 66  PEAGKIALRAGNADIMVSDWLWVSRERALGARLTFSPYSSALGAVMVPASSPLKTLADLK 125

Query: 126 GRKLAIAGGAIDKNWLLLQ 144
           GRKLA+AGG +DK+WLLLQ
Sbjct: 126 GRKLAVAGGPLDKSWLLLQ 144


>emb|CAJ01648.1| abc transporter substrate-binding protein, similar to blr6192 of
           Bradyrhizobium japonicum [Methylocapsa acidiphila]
          Length = 325

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 103/128 (80%)

Query: 13  VLAVMQFGTSCYAQTIRVAAQKTGTLAWELAVIRSHGLDKKANLSIDVVELASPEAGKIA 72
           + A +  G++  A+T+R+  QKTGTL WELA+I++ GLDKKA+L + V ELASPEAGKIA
Sbjct: 12  ICAPLALGSASAAETLRIGVQKTGTLGWELAIIKARGLDKKADLDLKVAELASPEAGKIA 71

Query: 73  LRAGTADVMVSDWPWVSRERSLGAKLQFYPYSSALGAVMVPASSPVKTLADLKGRKLAIA 132
           L  G+ D+++SD  WV+RERSLGA L F PYSSALGA+MVPA SP++ LADLK RKLA+A
Sbjct: 72  LIGGSVDMILSDLLWVARERSLGAHLLFKPYSSALGALMVPAGSPIRDLADLKNRKLAVA 131

Query: 133 GGAIDKNW 140
           GG +DK+W
Sbjct: 132 GGPLDKSW 139


>ref|ZP_08072203.1| ABC transporter substrate-binding protein [Methylocystis sp. ATCC
           49242]
 gb|EFY00005.1| ABC transporter substrate-binding protein [Methylocystis sp. ATCC
           49242]
          Length = 326

 Score =  156 bits (395), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 79/138 (57%), Positives = 106/138 (76%), Gaps = 3/138 (2%)

Query: 9   LAAAVLAVMQFGT--SCYAQTIRVAAQKTGTLAWELAVIRSHGLDKKANLSIDVVELASP 66
           LAA  LAV  F    +  A+ +R+A QKTGT  WELAV+++  LDK+A L +DV ELA+P
Sbjct: 7   LAAVGLAVTMFLAVPTQAAEKLRLALQKTGTTGWELAVVKAFDLDKEAGLELDVTELAAP 66

Query: 67  EAGKIALRAGTADVMVSDWPWVSRERSLGAKLQFYPYSSALGAVMVPASSPVKTLADLKG 126
           EAGKIA++ G+ADV+VSDW WVSRER+ GAKL FYPYSSA+GAVM   ++ ++ + DL G
Sbjct: 67  EAGKIAIQGGSADVIVSDWLWVSRERAQGAKLTFYPYSSAIGAVMTKDAT-IRNVKDLVG 125

Query: 127 RKLAIAGGAIDKNWLLLQ 144
           +KL +AGG +DK+WL+L+
Sbjct: 126 KKLGVAGGPLDKSWLMLK 143