BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0161.0004.p         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772840.1| ABC transporter permease protein [Bradyrhizobiu...    97   7e-19
ref|YP_001207366.1| ABC transporter permease [Bradyrhizobium sp....    89   2e-16
ref|YP_001241801.1| ABC transporter permease [Bradyrhizobium sp....    86   3e-15
ref|ZP_08072202.1| binding-protein-dependent transport systems i...    69   3e-10
emb|CAJ01649.1| abc transporter permease protein, similar to blr...    63   1e-08

>ref|NP_772840.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
          110]
 dbj|BAC51465.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
          110]
          Length = 245

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 60/64 (93%)

Query: 11 IATWWIASLLIGDAKLPAPPAVLSVLVAEARSGALFVNLGATLARVALAFTLAMALGSAI 70
          +ATWW+A+L +G AKLP+PPAVL+V++AEA SGALF++LGATLARVALAF LAM+LGSAI
Sbjct: 11 LATWWLAALFVGGAKLPSPPAVLTVIIAEASSGALFLHLGATLARVALAFVLAMSLGSAI 70

Query: 71 GYLM 74
          GYLM
Sbjct: 71 GYLM 74


>ref|YP_001207366.1| ABC transporter permease [Bradyrhizobium sp. ORS 278]
 emb|CAL79149.1| Putative ABC transporter (permease protein) [Bradyrhizobium sp.
          ORS 278]
          Length = 245

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 56/64 (87%)

Query: 11 IATWWIASLLIGDAKLPAPPAVLSVLVAEARSGALFVNLGATLARVALAFTLAMALGSAI 70
          +ATWW+A+ L G AKLP P  VL+V VAEA+SGALF++LGATLARVALAFTL+MA+GSA+
Sbjct: 11 LATWWVAATLAGSAKLPPPSTVLAVAVAEAKSGALFLHLGATLARVALAFTLSMAIGSAL 70

Query: 71 GYLM 74
          GY M
Sbjct: 71 GYWM 74


>ref|YP_001241801.1| ABC transporter permease [Bradyrhizobium sp. BTAi1]
 gb|ABQ37895.1| Putative ABC transporter (permease protein) [Bradyrhizobium sp.
          BTAi1]
          Length = 245

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 55/64 (85%)

Query: 11 IATWWIASLLIGDAKLPAPPAVLSVLVAEARSGALFVNLGATLARVALAFTLAMALGSAI 70
          +ATWWIA+ + G  KLP P AVL+V +AEA+SGALF++LGATLARV LAFTL+MA+GSA+
Sbjct: 11 LATWWIAAAVAGSVKLPPPSAVLAVAIAEAQSGALFLHLGATLARVTLAFTLSMAIGSAL 70

Query: 71 GYLM 74
          GY M
Sbjct: 71 GYWM 74


>ref|ZP_08072202.1| binding-protein-dependent transport systems inner membrane
          component [Methylocystis sp. ATCC 49242]
 gb|EFY00004.1| binding-protein-dependent transport systems inner membrane
          component [Methylocystis sp. ATCC 49242]
          Length = 251

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 48/74 (64%)

Query: 1  VLRLLSFTLFIATWWIASLLIGDAKLPAPPAVLSVLVAEARSGALFVNLGATLARVALAF 60
          ++R++S  L +  W I + +    +LP P  V   +  EARSGALF NL  TLARV  +F
Sbjct: 1  MIRIVSLALLLGVWQIGAWMSDPRRLPGPSLVFEAIYEEARSGALFSNLAITLARVIASF 60

Query: 61 TLAMALGSAIGYLM 74
           LAM+LG+AIGYLM
Sbjct: 61 ALAMSLGAAIGYLM 74


>emb|CAJ01649.1| abc transporter permease protein, similar to blr6193 of
          Bradyrhizobium japonicum [Methylocapsa acidiphila]
          Length = 246

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 43/57 (75%)

Query: 18 SLLIGDAKLPAPPAVLSVLVAEARSGALFVNLGATLARVALAFTLAMALGSAIGYLM 74
          S+  G   LPAP AVL+V+ AEARSGALF NL ATL RV  +FTLAMALG+A+G  M
Sbjct: 19 SVFAGPRALPAPLAVLAVIDAEARSGALFFNLAATLLRVVASFTLAMALGTALGLAM 75