BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0161.0003.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001241801.1| ABC transporter permease [Bradyrhizobium sp....   112   2e-23
ref|ZP_08072202.1| binding-protein-dependent transport systems i...   107   6e-22
ref|YP_001207366.1| ABC transporter permease [Bradyrhizobium sp....   107   8e-22
ref|NP_772840.1| ABC transporter permease protein [Bradyrhizobiu...   103   7e-21
emb|CAJ01649.1| abc transporter permease protein, similar to blr...    95   3e-18

>ref|YP_001241801.1| ABC transporter permease [Bradyrhizobium sp. BTAi1]
 gb|ABQ37895.1| Putative ABC transporter (permease protein) [Bradyrhizobium sp.
           BTAi1]
          Length = 245

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/72 (87%), Positives = 65/72 (90%)

Query: 1   VLAYIWAGLTEVAAIAAIAINKLPTAVVTLREGARALDPALDEMATAFSFPRGRAFRHVI 60
           VLAYIWAGLTEVAAIAAIAINKLPTAVVTLREGARALDPALDEMA  F+FPRGR  RHV+
Sbjct: 101 VLAYIWAGLTEVAAIAAIAINKLPTAVVTLREGARALDPALDEMAKVFAFPRGRILRHVL 160

Query: 61  LPQLAPYIXRCA 72
           LPQLAPYI   A
Sbjct: 161 LPQLAPYIAAAA 172


>ref|ZP_08072202.1| binding-protein-dependent transport systems inner membrane
           component [Methylocystis sp. ATCC 49242]
 gb|EFY00004.1| binding-protein-dependent transport systems inner membrane
           component [Methylocystis sp. ATCC 49242]
          Length = 251

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 58/68 (85%)

Query: 1   VLAYIWAGLTEVAAIAAIAINKLPTAVVTLREGARALDPALDEMATAFSFPRGRAFRHVI 60
           VLAY+WAGLTEVAAI A+A+NKLP AVV +REGARALDP L+EMA AF F R   FRH++
Sbjct: 101 VLAYVWAGLTEVAAIGAVALNKLPNAVVVVREGARALDPQLEEMAQAFHFSRATRFRHLV 160

Query: 61  LPQLAPYI 68
           LPQLAPY+
Sbjct: 161 LPQLAPYL 168


>ref|YP_001207366.1| ABC transporter permease [Bradyrhizobium sp. ORS 278]
 emb|CAL79149.1| Putative ABC transporter (permease protein) [Bradyrhizobium sp. ORS
           278]
          Length = 245

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 63/72 (87%)

Query: 1   VLAYIWAGLTEVAAIAAIAINKLPTAVVTLREGARALDPALDEMATAFSFPRGRAFRHVI 60
           VLAYIWAGLTEVAAIAAIAINKLPTAVVTLREGARALDP+LDEMA  F+ PR R  RHV+
Sbjct: 101 VLAYIWAGLTEVAAIAAIAINKLPTAVVTLREGARALDPSLDEMAKVFALPRSRILRHVL 160

Query: 61  LPQLAPYIXRCA 72
           LPQLAPYI   A
Sbjct: 161 LPQLAPYIAAAA 172


>ref|NP_772840.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC51465.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
          Length = 245

 Score =  103 bits (258), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/72 (80%), Positives = 63/72 (87%)

Query: 1   VLAYIWAGLTEVAAIAAIAINKLPTAVVTLREGARALDPALDEMATAFSFPRGRAFRHVI 60
           VLAYIWAGLTE AAIAAIAINKLPTA+VTLREG RALD +LDEMA+ F+ PR RAFRHV+
Sbjct: 101 VLAYIWAGLTEAAAIAAIAINKLPTAIVTLREGTRALDRSLDEMASVFAMPRWRAFRHVV 160

Query: 61  LPQLAPYIXRCA 72
           LPQLAPYI   A
Sbjct: 161 LPQLAPYIAASA 172


>emb|CAJ01649.1| abc transporter permease protein, similar to blr6193 of
           Bradyrhizobium japonicum [Methylocapsa acidiphila]
          Length = 246

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 53/68 (77%)

Query: 1   VLAYIWAGLTEVAAIAAIAINKLPTAVVTLREGARALDPALDEMATAFSFPRGRAFRHVI 60
           VLAYIW GL E AAI A+A+NKLP A  T+REGARALD +LDEMA  F+ P G   RHV+
Sbjct: 102 VLAYIWIGLNETAAIGAVALNKLPIATATVREGARALDASLDEMARVFAMPLGVRVRHVL 161

Query: 61  LPQLAPYI 68
           LPQLAPY+
Sbjct: 162 LPQLAPYL 169