BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0160.0005.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776027.1| LysR family transcription regulator protein ... 225 7e-57 ref|YP_004154456.1| LysR family transcriptional regulator [Vario... 220 2e-55 gb|EGD01160.1| LysR family transcriptional regulator [Burkholder... 216 3e-54 ref|YP_373307.1| LysR family transcriptional regulator [Burkhold... 214 2e-53 ref|YP_002233219.1| LysR family regulatory protein [Burkholderia... 206 5e-51 >ref|YP_003776027.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64119.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 286 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 116/282 (41%), Positives = 169/282 (59%) Query: 3 SQLRAFHAVAAHGGFTAASRVLNVGQPTLTIQVKELEESYGVELLIRKPRHTELTEAGAA 62 SQLRAF AVA H GF+AA+R L V QPTLT QV+ LE + VEL R+ R +L+E Sbjct: 4 SQLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSETAQR 63 Query: 63 LFEITRGIMTFCDEAHDLLAAHGKATKGHLRVATVGPFHATEIIAAFKRDHPEVQISTLL 122 L I + I +A +LL G GHLR+ VGPFH E++ A++ +P V++S L Sbjct: 64 LLPIAQNIAELELDALNLLVNSGALHVGHLRIGAVGPFHVIEMVDAYRARYPRVELSIRL 123 Query: 123 GNSERTFRHIVDFEADVAILAEVPEDPRVTMIPYRTHRVIVFVNRDHPWFKRKSVRLREL 182 GNS +T + ++ DVA+LA +D R +PY H V++F +R HP+++R SV L EL Sbjct: 124 GNSAQTLADLENYVTDVAVLASFTDDARFHALPYADHAVVLFAHRSHPFYQRDSVTLAEL 183 Query: 183 ADQPIVLRERGSTTRRAFEATMQAEGIRIEPVFEIESREGVWKAVERGLGISVVADFEFV 242 QP+++RE+GSTTR A E +Q G++++ V EI SRE + +AV RGLG+ V++ EFV Sbjct: 184 DQQPMLMREQGSTTRLALEKALQQAGVKVQVVMEIGSREALREAVARGLGLGAVSEAEFV 243 Query: 243 PHPNLRALEISDRTIKTQYSIAHHSGRGHSPIIKAFIDTVRR 284 P R + I + T + + R ++ +F+ R Sbjct: 244 PDERFRMVRIEGDPVSTHTYVYCLAERREGRLVGSFMKIAAR 285 >ref|YP_004154456.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU36345.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 294 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 113/281 (40%), Positives = 173/281 (61%) Query: 2 FSQLRAFHAVAAHGGFTAASRVLNVGQPTLTIQVKELEESYGVELLIRKPRHTELTEAGA 61 +QLR+F+AVA G FT A+ L+V QPT+T QV+ LEE+Y VEL R+ R +LTE G Sbjct: 3 LTQLRSFYAVAREGSFTKAAEHLHVSQPTITTQVRFLEEAYQVELFHRRGRRVQLTEIGE 62 Query: 62 ALFEITRGIMTFCDEAHDLLAAHGKATKGHLRVATVGPFHATEIIAAFKRDHPEVQISTL 121 L ++ + I + +A LL G GHLRVA VGP+H T+++ F +P V+++ Sbjct: 63 QLMQLAQQIFSLEGDAVALLGDAGTLRTGHLRVAAVGPYHVTKMLVDFSLRYPGVKVTVS 122 Query: 122 LGNSERTFRHIVDFEADVAILAEVPEDPRVTMIPYRTHRVIVFVNRDHPWFKRKSVRLRE 181 GNS+ +VD+ ADV +LA++ D R +P+ H V++FV H + +R+++RL E Sbjct: 123 TGNSQDVLDSLVDYSADVGVLAQMVRDDRFLSVPFSQHPVVMFVPSTHRFARRRNIRLAE 182 Query: 182 LADQPIVLRERGSTTRRAFEATMQAEGIRIEPVFEIESREGVWKAVERGLGISVVADFEF 241 L + +++RE+GSTTR+A E + + ++ V EI SRE + +AV +GLGI+ V+ EF Sbjct: 183 LQGERLIMREQGSTTRKALELALAKAKVEVDVVMEISSREVIREAVSQGLGIAAVSSVEF 242 Query: 242 VPHPNLRALEISDRTIKTQYSIAHHSGRGHSPIIKAFIDTV 282 VP P+LR + SD I T + + R ++ AF DT+ Sbjct: 243 VPSPDLRMVGFSDTEIFTYAHVLCLAERREMRMVSAFFDTL 283 >gb|EGD01160.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 302 Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 119/289 (41%), Positives = 165/289 (57%) Query: 2 FSQLRAFHAVAAHGGFTAASRVLNVGQPTLTIQVKELEESYGVELLIRKPRHTELTEAGA 61 +Q+R+F AV HGGFTAA+R L+ Q T+T Q++ LE +GVEL R+ R EL+ G Sbjct: 14 LTQIRSFIAVVQHGGFTAAARALSTSQTTITSQIQTLEHEHGVELFHRRGRRVELSAVGV 73 Query: 62 ALFEITRGIMTFCDEAHDLLAAHGKATKGHLRVATVGPFHATEIIAAFKRDHPEVQISTL 121 I R I + +A LL G +G L++ VGPFH TE+I A+ HP + +S Sbjct: 74 EFLPIARRICSDETDAAALLRDSGALQRGSLKIGAVGPFHVTEMIEAYHALHPHMHLSVA 133 Query: 122 LGNSERTFRHIVDFEADVAILAEVPEDPRVTMIPYRTHRVIVFVNRDHPWFKRKSVRLRE 181 LGNSE R + + DV ++A EDPR Y + VI FV HP+ KR ++ L E Sbjct: 134 LGNSEAVLRDLDQYTCDVGVVARAFEDPRYFTQRYASFPVIAFVRSTHPFAKRATITLGE 193 Query: 182 LADQPIVLRERGSTTRRAFEATMQAEGIRIEPVFEIESREGVWKAVERGLGISVVADFEF 241 LA +P+++RE GSTTRRA E MQA G+ +I SRE + +AV RGLG+ V+ E+ Sbjct: 194 LAGEPLLMREPGSTTRRALEDAMQAAGLTPRVAMDIGSREALREAVARGLGVGTVSKAEY 253 Query: 242 VPHPNLRALEISDRTIKTQYSIAHHSGRGHSPIIKAFIDTVRRMKGRDA 290 VP LR L I ++T + S R S ++ +F D V R + DA Sbjct: 254 VPDERLRPLRIEGDPVETHIHVCCLSERRDSRLVASFFDAVARCRPLDA 302 >ref|YP_373307.1| LysR family transcriptional regulator [Burkholderia sp. 383] gb|ABB12663.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 291 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 119/289 (41%), Positives = 165/289 (57%) Query: 2 FSQLRAFHAVAAHGGFTAASRVLNVGQPTLTIQVKELEESYGVELLIRKPRHTELTEAGA 61 +QLR+F AV HGGFTAA+RVL+ Q T+T Q++ LE+ +GVEL R+ R EL+ G Sbjct: 3 LTQLRSFIAVVQHGGFTAAARVLSTSQTTITSQIQTLEQEHGVELFHRRGRRVELSAVGL 62 Query: 62 ALFEITRGIMTFCDEAHDLLAAHGKATKGHLRVATVGPFHATEIIAAFKRDHPEVQISTL 121 I R I + +A LL G +G L++ VGPFH TE+I A+ HP + +S Sbjct: 63 EFLPIARRICSDETDAAALLRDSGALQRGSLKIGAVGPFHVTEMIEAYHALHPHMHLSVA 122 Query: 122 LGNSERTFRHIVDFEADVAILAEVPEDPRVTMIPYRTHRVIVFVNRDHPWFKRKSVRLRE 181 LGNSE R + + DV ++A ED R Y + VI FV HP+ KR ++ L E Sbjct: 123 LGNSETVLRDLDQYVCDVGVVARAFEDARYFTQRYASFPVIAFVRTTHPFAKRDAIALHE 182 Query: 182 LADQPIVLRERGSTTRRAFEATMQAEGIRIEPVFEIESREGVWKAVERGLGISVVADFEF 241 LA +P+++RE GSTTRRA E M+A G+ +I SRE + +AV RGLG+ V+ E+ Sbjct: 183 LAGEPLLMREPGSTTRRALEDAMEAAGLTPRIAMDIGSREALREAVARGLGVGTVSKAEY 242 Query: 242 VPHPNLRALEISDRTIKTQYSIAHHSGRGHSPIIKAFIDTVRRMKGRDA 290 VP LR L I + T + S R S ++ +F D V R + DA Sbjct: 243 VPDARLRPLRIDGDPVVTHIHVCCLSERRESRLVASFFDAVARCRPLDA 291 >ref|YP_002233219.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] emb|CAR54454.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 291 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 115/288 (39%), Positives = 162/288 (56%) Query: 2 FSQLRAFHAVAAHGGFTAASRVLNVGQPTLTIQVKELEESYGVELLIRKPRHTELTEAGA 61 +QLR+F AV HGGFTAA+R L+ Q T+T Q++ LE +GVEL R+ R EL+ G Sbjct: 3 LTQLRSFIAVVQHGGFTAAARALSTSQTTITSQIQTLEHEHGVELFHRRGRRVELSAVGL 62 Query: 62 ALFEITRGIMTFCDEAHDLLAAHGKATKGHLRVATVGPFHATEIIAAFKRDHPEVQISTL 121 I R I + +A LL G +G L++ VGPFH TE+I A+ + HP + +S Sbjct: 63 EFLPIARRICSDESDAAALLRDSGALQRGSLKIGAVGPFHVTEMIDAYHKLHPHMHLSVA 122 Query: 122 LGNSERTFRHIVDFEADVAILAEVPEDPRVTMIPYRTHRVIVFVNRDHPWFKRKSVRLRE 181 LGNSE R + ++ DV ++A ED R Y + VI FV H + R ++ L E Sbjct: 123 LGNSETVLRDLDEYVCDVGVVARAFEDARYFTQRYASFPVIAFVRSTHRFATRDAITLHE 182 Query: 182 LADQPIVLRERGSTTRRAFEATMQAEGIRIEPVFEIESREGVWKAVERGLGISVVADFEF 241 LA +P+++RE GSTTRRA E M A G+ +I SRE + +AV RGLG+ V+ E+ Sbjct: 183 LAGEPLLMREPGSTTRRALEDAMAAAGLTPRIAMDIGSREALREAVARGLGVGTVSKAEY 242 Query: 242 VPHPNLRALEISDRTIKTQYSIAHHSGRGHSPIIKAFIDTVRRMKGRD 289 VP LR L I ++T + S R S ++ +F D V R + D Sbjct: 243 VPDERLRPLRIDGDPVETHIHVCCLSERRGSRLVASFFDAVARCRPLD 290