BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0087.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_533173.1| hypothetical protein RPC_3312 [Rhodopseudomonas... 429 e-118 ref|YP_001206481.1| hypothetical protein BRADO4524 [Bradyrhizobi... 428 e-118 ref|YP_486025.1| hypothetical protein RPB_2409 [Rhodopseudomonas... 428 e-118 ref|YP_004108615.1| hypothetical protein Rpdx1_2290 [Rhodopseudo... 426 e-117 ref|YP_782302.1| hypothetical protein RPE_3390 [Rhodopseudomonas... 424 e-117 >ref|YP_533173.1| hypothetical protein RPC_3312 [Rhodopseudomonas palustris BisB18] gb|ABD88854.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 290 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/286 (73%), Positives = 240/286 (83%), Gaps = 7/286 (2%) Query: 5 FRTPSRALVFAIAVAAGSGLVQGPAVAAASGP--FLAHQALYDLSLVKSRGSNSVSDARG 62 FR A+ A+A A G AVA A P FLAHQALY+LSL+K+RG+ SV+ RG Sbjct: 10 FRLSLLAITVAVAPAG-----FGAAVAQAGAPPAFLAHQALYELSLLKARGNASVNSVRG 64 Query: 63 RILYNFSGNSCEGYTSEFRQVSELDSGEGKVTLSDLRSTSWEDATGKSYRFKIDTRMNDS 122 RILYNFSG++C+GY+S+FRQVSELDSGEGK TLSDLRSTSWED GKSYRFKIDT+MND Sbjct: 65 RILYNFSGSACDGYSSDFRQVSELDSGEGKNTLSDLRSTSWEDGEGKSYRFKIDTKMNDG 124 Query: 123 ESSPVDGIAERVGDHITVKLTQPVKKTFNIDGKIVFPTEQIQHIIAAARDGKSVLEQTVY 182 + S VDGIAER GDH+TVKL +P KTF +DG VFPTEQI IIAAARDGKSVLE +VY Sbjct: 125 DPSSVDGIAERTGDHVTVKLKKPAAKTFTLDGSTVFPTEQIHRIIAAARDGKSVLELSVY 184 Query: 183 DGSDNGEKIYNTLTVIGRPIAGDRAPSSPDPSTASNAMKAMTRWPVTVSYYDSDARAKDG 242 DGSDNGEK+YNTLTVIG+PI GDRA ++PDPST+S+AMK++TRWPVTVSYYD +A+A G Sbjct: 185 DGSDNGEKVYNTLTVIGQPIPGDRAVTAPDPSTSSDAMKSLTRWPVTVSYYDREAKANSG 244 Query: 243 EQTPVYAMSFELYENGVSRALVLDYNDFVISGALDKFDVRDSKPCK 288 EQTPVYAMSFELYENGVSRALVLDYNDFVI+GAL KFDV+ SKPCK Sbjct: 245 EQTPVYAMSFELYENGVSRALVLDYNDFVIAGALGKFDVKASKPCK 290 >ref|YP_001206481.1| hypothetical protein BRADO4524 [Bradyrhizobium sp. ORS 278] emb|CAL78261.1| conserved hypothetical protein; putative secreted protein [Bradyrhizobium sp. ORS 278] Length = 286 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/277 (75%), Positives = 235/277 (84%), Gaps = 7/277 (2%) Query: 15 AIAVAAGSGLVQGPAVAAASGPFLAHQALYDLSLVKSRGSNSVSDARGRILYNFSGNSCE 74 A+A+AA + GPA A A PFL HQALY+LSL+KSRGS+ V+ ARGRILYNFSGN+C Sbjct: 11 ALAIAA---ITFGPAQAGAGVPFLPHQALYELSLLKSRGSSPVNSARGRILYNFSGNACN 67 Query: 75 GYTSEFRQVSELDSGEGKVTLSDLRSTSWEDATGKSYRFKIDTRMNDSESSPVDGIAERV 134 GYTS+FRQVSELD GEGKVTLSDLRST+WED GKSYRFKID+RMND SSPVDGIAER Sbjct: 68 GYTSDFRQVSELDLGEGKVTLSDLRSTAWEDGAGKSYRFKIDSRMNDQASSPVDGIAERS 127 Query: 135 GDHITVKLTQPVKKTFNIDGKIVFPTEQIQHIIAAARDGKSVLEQTVYDGSDNGEKIYNT 194 GDHITVKL QP KTF +DG VFPTEQIQ IIAAAR+GKS+LE +VYDGSDNGEK+YNT Sbjct: 128 GDHITVKLKQPEAKTFTLDGSTVFPTEQIQRIIAAAREGKSLLELSVYDGSDNGEKVYNT 187 Query: 195 LTVIGRPIAGDRAPSSPDPSTASNAMKAMTRWPVTVSYYDSDARAKDGEQTPVYAMSFEL 254 LTVIG + GD+AP+ PD ST ++ MK++TRWPVTVSYYD DA+ +GEQTPVYAMSFEL Sbjct: 188 LTVIGAAVPGDKAPAKPDASTDNDEMKSLTRWPVTVSYYDRDAKRTEGEQTPVYAMSFEL 247 Query: 255 YENGVSRALVLDYNDFVISGALDKFDVRDS----KPC 287 YENGVSRALVLDYNDFVI+GAL KFDV+DS KPC Sbjct: 248 YENGVSRALVLDYNDFVIAGALGKFDVKDSKDSNKPC 284 >ref|YP_486025.1| hypothetical protein RPB_2409 [Rhodopseudomonas palustris HaA2] gb|ABD07114.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 286 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/282 (71%), Positives = 239/282 (84%) Query: 7 TPSRALVFAIAVAAGSGLVQGPAVAAASGPFLAHQALYDLSLVKSRGSNSVSDARGRILY 66 T RA + A+ + + L PA+AA + FL HQALYDLSL+K+R + SVS RGRILY Sbjct: 5 TSLRANMLAMTMFGAAALSGAPALAAPNVSFLPHQALYDLSLLKTRNNASVSTVRGRILY 64 Query: 67 NFSGNSCEGYTSEFRQVSELDSGEGKVTLSDLRSTSWEDATGKSYRFKIDTRMNDSESSP 126 NFSGNSCEGYTS+FRQVSE++SGEGK TLSDLRS+SWEDA GKSYRFKIDT+MND++ + Sbjct: 65 NFSGNSCEGYTSDFRQVSEIESGEGKNTLSDLRSSSWEDAAGKSYRFKIDTKMNDADPTD 124 Query: 127 VDGIAERVGDHITVKLTQPVKKTFNIDGKIVFPTEQIQHIIAAARDGKSVLEQTVYDGSD 186 VDGIAER GD ITVKL QPV+KTF +DGK VFPTEQI+ IIAAAR GK++LE VYDGSD Sbjct: 125 VDGIAERTGDTITVKLKQPVQKTFTLDGKTVFPTEQIERIIAAARQGKTLLELQVYDGSD 184 Query: 187 NGEKIYNTLTVIGRPIAGDRAPSSPDPSTASNAMKAMTRWPVTVSYYDSDARAKDGEQTP 246 NGEK+YNTLTVIG+PI GDRA SSPDPST+ +AMK++ RWPVTVSYYD A++ GEQTP Sbjct: 185 NGEKVYNTLTVIGQPIQGDRAASSPDPSTSDDAMKSLKRWPVTVSYYDHAAKSNSGEQTP 244 Query: 247 VYAMSFELYENGVSRALVLDYNDFVISGALDKFDVRDSKPCK 288 VYAMSFELYENGVSR+LVLDYNDFV++GA+ KFDV+ +KPC+ Sbjct: 245 VYAMSFELYENGVSRSLVLDYNDFVLAGAMGKFDVKSNKPCQ 286 >ref|YP_004108615.1| hypothetical protein Rpdx1_2290 [Rhodopseudomonas palustris DX-1] gb|ADU43882.1| Domain of unknown function DUF1849 [Rhodopseudomonas palustris DX-1] Length = 288 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/278 (73%), Positives = 234/278 (84%), Gaps = 5/278 (1%) Query: 11 ALVFAIAVAAGSGLVQGPAVAAASGPFLAHQALYDLSLVKSRGSNSVSDARGRILYNFSG 70 A+V A+A++ GS V GPA+ FL HQALYDLSL+K+R + SVS RGRILYNFSG Sbjct: 16 AIVAALAISTGSAAVAGPAIN-----FLPHQALYDLSLLKTRNNASVSTVRGRILYNFSG 70 Query: 71 NSCEGYTSEFRQVSELDSGEGKVTLSDLRSTSWEDATGKSYRFKIDTRMNDSESSPVDGI 130 N+CEGYTS+FRQVSE++SGEGK TLSDLRS+SWEDA GKSYRFKI TRM+DS+ S VDGI Sbjct: 71 NACEGYTSDFRQVSEIESGEGKNTLSDLRSSSWEDAAGKSYRFKIGTRMDDSKESDVDGI 130 Query: 131 AERVGDHITVKLTQPVKKTFNIDGKIVFPTEQIQHIIAAARDGKSVLEQTVYDGSDNGEK 190 AER GDHITVKL QPV+KTF +DG VFPTEQI+ II AAR GKS+L +VYDGSDNGEK Sbjct: 131 AERTGDHITVKLKQPVQKTFQLDGATVFPTEQIERIIEAARAGKSLLNLSVYDGSDNGEK 190 Query: 191 IYNTLTVIGRPIAGDRAPSSPDPSTASNAMKAMTRWPVTVSYYDSDARAKDGEQTPVYAM 250 +YNTLTVIG+PI GD A +SPDPS AMKAMTRWPVTVSYYD DA+A GEQTPVYAM Sbjct: 191 VYNTLTVIGQPIKGDGAAASPDPSINDEAMKAMTRWPVTVSYYDRDAKANAGEQTPVYAM 250 Query: 251 SFELYENGVSRALVLDYNDFVISGALDKFDVRDSKPCK 288 SFELYENGVSR+LVLDYNDFV++GA+ K +V+ SKPCK Sbjct: 251 SFELYENGVSRSLVLDYNDFVLAGAMGKLEVKASKPCK 288 >ref|YP_782302.1| hypothetical protein RPE_3390 [Rhodopseudomonas palustris BisA53] gb|ABJ07322.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 289 Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/262 (76%), Positives = 228/262 (87%) Query: 27 GPAVAAASGPFLAHQALYDLSLVKSRGSNSVSDARGRILYNFSGNSCEGYTSEFRQVSEL 86 G A A A PFL+HQALY+LSL+K+RG+ SV+ RGRILYNFSG++CEGY+S+FRQVSEL Sbjct: 28 GMAQAGAPTPFLSHQALYELSLLKARGNASVNSVRGRILYNFSGSACEGYSSDFRQVSEL 87 Query: 87 DSGEGKVTLSDLRSTSWEDATGKSYRFKIDTRMNDSESSPVDGIAERVGDHITVKLTQPV 146 DSGEGK TLSDLRSTSWED K+YRFKI+T+MND + S VDGIAER GDH+ VKL +PV Sbjct: 88 DSGEGKNTLSDLRSTSWEDGQSKTYRFKIETKMNDGDPSSVDGIAEREGDHVRVKLKRPV 147 Query: 147 KKTFNIDGKIVFPTEQIQHIIAAARDGKSVLEQTVYDGSDNGEKIYNTLTVIGRPIAGDR 206 KTFN+DG VFPTEQI IIAAAR+GKSVLE VYDGSDNGEK+YNTLTVIG+PIAG Sbjct: 148 TKTFNLDGATVFPTEQIHRIIAAAREGKSVLELAVYDGSDNGEKVYNTLTVIGQPIAGTS 207 Query: 207 APSSPDPSTASNAMKAMTRWPVTVSYYDSDARAKDGEQTPVYAMSFELYENGVSRALVLD 266 A ++PDPSTA+ AMK +TRWPVTVSYYD DA+A GEQTPVYAMSFELYENGVSRALVLD Sbjct: 208 AVTAPDPSTAAEAMKPLTRWPVTVSYYDRDAKANSGEQTPVYAMSFELYENGVSRALVLD 267 Query: 267 YNDFVISGALDKFDVRDSKPCK 288 YNDFVI+GAL KFDVRD+KPCK Sbjct: 268 YNDFVIAGALGKFDVRDTKPCK 289