BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0156.0074.p         (352 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGD03572.1| acyl-CoA dehydrogenase [Burkholderia sp. TJI49]        338   6e-91
ref|ZP_01015530.1| FadE25_4 [Maritimibacter alkaliphilus HTCC265...   335   7e-90
ref|ZP_01747675.1| putative acyl-CoA dehydrogenase [Sagittula st...   328   1e-87
pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogena...   263   3e-68
ref|NP_962326.1| FadE25_4 [Mycobacterium avium subsp. paratuberc...   260   2e-67

>gb|EGD03572.1| acyl-CoA dehydrogenase [Burkholderia sp. TJI49]
          Length = 380

 Score =  338 bits (868), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 157/285 (55%), Positives = 217/285 (76%), Gaps = 2/285 (0%)

Query: 1   MSFSEEQVAFRDNVRRMVAKHVAPIAAEIDETDRFPLELVKLFGEMGLMQLWVPERYGGP 60
           M F+EEQ   RD VRR+  + V P+ A+++ET RFP ELV++FG++GL+Q+WVPE YGGP
Sbjct: 1   MKFTEEQDMLRDMVRRVAEEQVRPLVADMEETKRFPQELVEVFGDLGLLQMWVPEAYGGP 60

Query: 61  NGNLTMACIAREEISKVSPACASIAALNTM-FIMPLLHFGSEEQRKKYLPIIAEGGVVTA 119
            G+LT  CIA+EEI KVS A +++ A N++  I+PLLHFG++ QR +YLP  A+G  V++
Sbjct: 61  GGDLTSVCIAKEEIGKVSLAASTLCANNSIGLILPLLHFGTDAQRARYLPEAAKGRTVSS 120

Query: 120 IAISEPQAGSDVAALNTRARKDGDSYVLNGRKQWCSYGVAADYIVVMARTSDGAGADGIS 179
           +AI+EP+AGSDV+A+ T AR+DGDSYV+NG+K W ++   A Y++V ARTS+G G DGIS
Sbjct: 121 VAITEPEAGSDVSAIRTTARRDGDSYVINGQKSWITWAAQAHYMLVFARTSEGRGHDGIS 180

Query: 180 AFIVEPKRMPGITFGRHERKMGFRGAPNTPIFFDNVRVPAENLVGEEGKGFRASMRALDL 239
            F+++ K  PG+  GR E KMG  G+P   +FF+++RV A+ L+GEEG GF+A M+ LDL
Sbjct: 181 VFLIDTK-TPGLKIGRKEVKMGRHGSPTYQVFFEDMRVAADCLLGEEGNGFKACMKILDL 239

Query: 240 NRPTIGAQSVGLAQGALDACVAYAKERKQFKKPIGEFQGVQFMLA 284
           NRP++ A S+GLAQ ALD  V YAK+R+QF K IG+FQ +QF LA
Sbjct: 240 NRPSVAASSLGLAQAALDESVQYAKDRRQFGKRIGDFQAIQFKLA 284


>ref|ZP_01015530.1| FadE25_4 [Maritimibacter alkaliphilus HTCC2654]
 gb|EAQ10823.1| FadE25_4 [Rhodobacterales bacterium HTCC2654]
          Length = 385

 Score =  335 bits (859), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 161/283 (56%), Positives = 211/283 (74%), Gaps = 2/283 (0%)

Query: 3   FSEEQVAFRDNVRRMVAKHVAPIAAEIDETDRFPLELVKLFGEMGLMQLWVPERYGGPNG 62
           + E+ + FRD +RRMV K VAPIAA+ID+ D  P  LV +FG++GL+Q+ VPE YGGP G
Sbjct: 7   YDEDLIMFRDTIRRMVEKDVAPIAAKIDQEDDMPHSLVPIFGDLGLIQIMVPEEYGGPGG 66

Query: 63  NLTMACIAREEISKVSPACAS-IAALNTMFIMPLLHFGSEEQRKKYLPIIAEGGVVTAIA 121
            LTMACIA+EE+S+ S A +  + A +    +PL H+G++ QR+KYLP IAEG  +T I 
Sbjct: 67  TLTMACIAKEEVSRASFAVSHLVGATSIAMALPLTHYGTDAQRQKYLPEIAEGRTLTCIG 126

Query: 122 ISEPQAGSDVAALNTRARKDGDSYVLNGRKQWCSYGVAADYIVVMARTSDGAGADGISAF 181
           ++EPQ GSDV+ + T A++DGD YV+NG+K + +    A YI++ ARTS+G G DGIS+F
Sbjct: 127 LTEPQTGSDVSGIKTTAKRDGDDYVINGQKVFITKADQAKYILLFARTSEGKGHDGISSF 186

Query: 182 IVEPKRMPGITFGRHERKMGFRGAPNTPIFFDNVRVPAENLVGEEGKGFRASMRALDLNR 241
           IV P   PG+  G   +KMG RG  N  +FF+NVRVPAENLVGEEG+GF+ +M  L+LNR
Sbjct: 187 IV-PMDSPGVKIGGSPKKMGLRGIKNCDLFFENVRVPAENLVGEEGQGFKNAMGVLNLNR 245

Query: 242 PTIGAQSVGLAQGALDACVAYAKERKQFKKPIGEFQGVQFMLA 284
           PT+GA SVG+AQGALDA +AYAKER+QF +PIG FQ VQ MLA
Sbjct: 246 PTVGAASVGIAQGALDAAMAYAKEREQFGQPIGNFQLVQAMLA 288


>ref|ZP_01747675.1| putative acyl-CoA dehydrogenase [Sagittula stellata E-37]
 gb|EBA06760.1| putative acyl-CoA dehydrogenase [Sagittula stellata E-37]
          Length = 380

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 161/308 (52%), Positives = 219/308 (71%), Gaps = 9/308 (2%)

Query: 3   FSEEQVAFRDNVRRMVAKHVAPIAAEIDETDRFPLELVKLFGEMGLMQLWVPERYGGPNG 62
           F+EEQ +FRD +R++  K VAPIA+ IDETD FP EL +LFGE+GL+ LWVPE YGG  G
Sbjct: 2   FTEEQKSFRDMLRKVTEKEVAPIASRIDETDEFPYELAELFGELGLLSLWVPEEYGGAGG 61

Query: 63  NLTMACIAREEISKVSPACASIAALNTM-FIMPLLHFGSEEQRKKYLPIIAEGGVVTAIA 121
           +LT  CIA+EE+ + S   +++AA N++  I+P+LH G+EEQ++KYLPI A G V+TAI 
Sbjct: 62  DLTTVCIAKEELGRASLTASALAANNSIGLILPVLHMGTEEQKQKYLPISASGKVITAIG 121

Query: 122 ISEPQAGSDVAALNTRARKDG-DSYVLNGRKQWCSYGVAADYIVVMARTSDGAGADGISA 180
           ++EP  GSDV ++ T A++ G DSYV+NG+K W ++G  ADY++V A+TS+G  +D ISA
Sbjct: 122 MTEPGTGSDVRSMKTFAKRQGNDSYVINGQKSWITWGGVADYVLVFAKTSEGTSSDSISA 181

Query: 181 FIVEPKRMPGITFGRHERKMGFRGAPNTPIFFDNVRVPAENLVGEEGKGFRASMRALDLN 240
           F+V+ K  PG   GR ERKMG  GAPN  +FF+++ VPA+ ++GEEG GF+  M+ LDLN
Sbjct: 182 FLVDTKT-PGFRVGRKERKMGRNGAPNHELFFEDMVVPADCMLGEEGTGFKGCMKILDLN 240

Query: 241 RPTIGAQSVGLAQGALDACVAYAKERKQFKKPIGEFQGVQFMLAXCRHHPAHRRG----- 295
           RPT+   S+GLAQGALD  +A+AKER QF + + +FQG+QF  A         R      
Sbjct: 241 RPTVAGSSLGLAQGALDTALAFAKERVQFGRAVSQFQGMQFKFADMHMKTEAARALLYSV 300

Query: 296 -AEPDPGD 302
            AE D GD
Sbjct: 301 CAEIDSGD 308


>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
           Mycobacterium Thermoresistibile Bound To Reduced Flavin
           Adenine Dinucleotide Solved By Combined Iodide Ion Sad
           Mr
 pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
           Mycobacterium Thermoresistibile Bound To Reduced Flavin
           Adenine Dinucleotide Solved By Combined Iodide Ion Sad
           Mr
 pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
           Mycobacterium Thermoresistibile Bound To Reduced Flavin
           Adenine Dinucleotide Solved By Combined Iodide Ion Sad
           Mr
 pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
           Mycobacterium Thermoresistibile Bound To Reduced Flavin
           Adenine Dinucleotide Solved By Combined Iodide Ion Sad
           Mr
          Length = 393

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 130/280 (46%), Positives = 182/280 (65%), Gaps = 1/280 (0%)

Query: 5   EEQVAFRDNVRRMVAKHVAPIAAEIDETDRFPLELVKLFGEMGLMQLWVPERYGGPNGNL 64
           EE +A R+ +R +  K +AP AAE+DE  RFP E +      G   + VPE YGG   + 
Sbjct: 21  EEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADS 80

Query: 65  TMACIAREEISKVSPACASIAALNTMFIMPLLHFGSEEQRKKYLPIIAEGGVVTAIAISE 124
              CI  EE+++V  + + I A+N +  M L+  GSEE +K+ LP +A G  + + A+SE
Sbjct: 81  VATCIVIEEVARVDCSASLIPAVNKLGTMGLILRGSEELKKQVLPAVASGEAMASYALSE 140

Query: 125 PQAGSDVAALNTRARKDGDSYVLNGRKQWCSYGVAADYIVVMARTSDGAGADGISAFIVE 184
            +AGSD A++ TRA  DGD ++LNG K W + G  + +  VMA T    GA+GISAF+V 
Sbjct: 141 REAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAFMVH 200

Query: 185 PKRMPGITFGRHERKMGFRGAPNTPIFFDNVRVPAENLVGEEGKGFRASMRALDLNRPTI 244
            K   G T G  ERK+G +G+P T ++F+N R+P + ++GE G GF+ ++  LD  RPTI
Sbjct: 201 -KDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTI 259

Query: 245 GAQSVGLAQGALDACVAYAKERKQFKKPIGEFQGVQFMLA 284
           GAQ+VG+AQGALDA +AY KERKQF +P+ + QGVQFMLA
Sbjct: 260 GAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLA 299


>ref|NP_962326.1| FadE25_4 [Mycobacterium avium subsp. paratuberculosis K-10]
 ref|YP_883384.1| acyl-CoA dehydrogenase [Mycobacterium avium 104]
 ref|ZP_05218194.1| acyl-CoA dehydrogenase [Mycobacterium avium subsp. avium ATCC
           25291]
 gb|AAS05942.1| FadE25_4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gb|ABK64547.1| acyl-CoA dehydrogenase [Mycobacterium avium 104]
          Length = 389

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/280 (45%), Positives = 183/280 (65%), Gaps = 1/280 (0%)

Query: 5   EEQVAFRDNVRRMVAKHVAPIAAEIDETDRFPLELVKLFGEMGLMQLWVPERYGGPNGNL 64
           EE    R  +R +  K +AP AA++DE  RFP E ++     G   + VPE YGG   + 
Sbjct: 17  EEHQELRAAIRALAEKEIAPHAADVDENSRFPQEALEALNAAGFNAVHVPEEYGGQGADS 76

Query: 65  TMACIAREEISKVSPACASIAALNTMFIMPLLHFGSEEQRKKYLPIIAEGGVVTAIAISE 124
             ACI  EE+++V  + + I A+N +  M L+  GS+E +K+ LP IA+G  + + A+SE
Sbjct: 77  VAACIVIEEVARVDTSASLIPAVNKLGTMGLILRGSDELKKQVLPSIADGSAMASYALSE 136

Query: 125 PQAGSDVAALNTRARKDGDSYVLNGRKQWCSYGVAADYIVVMARTSDGAGADGISAFIVE 184
            +AGSD A++ TRAR DGD ++LNG K W + G  + +  VMA T    GA+GIS+F+V 
Sbjct: 137 REAGSDAASMRTRARADGDDWILNGAKCWITNGGKSSWYTVMAVTDPDKGANGISSFMVH 196

Query: 185 PKRMPGITFGRHERKMGFRGAPNTPIFFDNVRVPAENLVGEEGKGFRASMRALDLNRPTI 244
            K   G T G  E+K+G +G+P T ++F+N R+P + ++GE G GF+ ++  LD  RPTI
Sbjct: 197 -KDDEGFTVGPKEKKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTI 255

Query: 245 GAQSVGLAQGALDACVAYAKERKQFKKPIGEFQGVQFMLA 284
           GAQ+VG+AQGALDA +AY KERKQF +P+ + QGVQFMLA
Sbjct: 256 GAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLA 295