BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0065.p (403 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769633.1| methyl accepting chemotaxis protein [Bradyrhizo... 508 e-142 ref|YP_001204676.1| hypothetical protein BRADO2621 [Bradyrhizobi... 493 e-137 ref|YP_001238992.1| hypothetical protein BBta_2961 [Bradyrhizobi... 471 e-131 ref|YP_001243236.1| hypothetical protein BBta_7477 [Bradyrhizobi... 183 4e-44 ref|NP_768250.1| hypothetical protein blr1610 [Bradyrhizobium ja... 183 5e-44 >ref|NP_769633.1| methyl accepting chemotaxis protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48258.1| bll2993 [Bradyrhizobium japonicum USDA 110] Length = 576 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 252/376 (67%), Positives = 311/376 (82%), Gaps = 5/376 (1%) Query: 1 MASRFSLAARLYSTFALIAALTAAITFLSEYNARRNAELTEAVDLASRAALNVERVNSLV 60 +A RF+LA +LY+ FAL A LTAAI LS+YN+RR+A+LT A++ A+ AALNVERVNSLV Sbjct: 12 LAGRFTLATKLYAIFALFALLTAAIAMLSDYNSRRSADLTSAIETANAAALNVERVNSLV 71 Query: 61 YAVVMESRGIYMSTDPAAVKKYGDGLLAFNERILGVVKNWEMLVQADDAAQFAVFKKRIE 120 YAVVMESRG+YMST+PA VKKYG+GLL FN +IL VVK WE +V+ DDA QFA F+KRIE Sbjct: 72 YAVVMESRGVYMSTEPAVVKKYGEGLLKFNAQILDVVKRWETIVRDDDAEQFATFRKRIE 131 Query: 121 QLIDFRKELVRRGIEIGAAAGREWGDNDANRDVRTALNKDLEALSKVYAERSKKLARETD 180 Q ++FRKELVRRG+EI AAAGREWGDNDANR VR+ALNKDLEALSKVYAER K++AR+T+ Sbjct: 132 QFVEFRKELVRRGVEINAAAGREWGDNDANRAVRSALNKDLEALSKVYAERGKQIARQTE 191 Query: 181 TNRTMALVLTGLGAAALIVVVLGVLIIARSVARPLSQITTTIKRVAEGADHVEVPHVEVP 240 TNRT++ VLT L AL +VV+G++IIARS+ARPL+ IT TIK+VA+GA+ +V VP Sbjct: 192 TNRTLSFVLTSLAGVALALVVIGIVIIARSIARPLASITATIKQVADGAE-----NVVVP 246 Query: 241 HVGRSDEIGALAHAIKVFQDAMDRNRSLNAQVVQESEARDARGRHIETFVEAFRGTIGEV 300 + R+DEIG LA AI++FQDAM RNR+L +QV Q+S AR+ R RHIE VE FR IG + Sbjct: 247 YGNRADEIGGLARAIQIFQDAMGRNRNLASQVSQDSAAREQRARHIEQSVEEFRDAIGAI 306 Query: 301 LRAVHDNAATMRQTAQTIATVASDASGRAVAAAGATEQASSNVSAVAGAAEELSASVEEI 360 +R + DNA+ MR+TAQTI V +DAS RA AA A++QAS NV+AVAGAAEELSASVEEI Sbjct: 307 MRGLGDNASVMRETAQTITRVTADASNRAGMAANASQQASHNVTAVAGAAEELSASVEEI 366 Query: 361 GRQVKQSSGAVDQAGR 376 GRQV+QS+GAV+Q G+ Sbjct: 367 GRQVRQSAGAVEQTGQ 382 >ref|YP_001204676.1| hypothetical protein BRADO2621 [Bradyrhizobium sp. ORS 278] emb|CAL76439.1| putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 595 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 247/371 (66%), Positives = 297/371 (80%), Gaps = 5/371 (1%) Query: 6 SLAARLYSTFALIAALTAAITFLSEYNARRNAELTEAVDLASRAALNVERVNSLVYAVVM 65 S+A +LY+ FAL A LTAAIT+LS+YN+RR AELT+A++ A+ AALNV+ VN LVYAVVM Sbjct: 32 SIAIKLYAIFALFALLTAAITWLSDYNSRRAAELTKAIETANLAALNVQSVNGLVYAVVM 91 Query: 66 ESRGIYMSTDPAAVKKYGDGLLAFNERILGVVKNWEMLVQADDAAQFAVFKKRIEQLIDF 125 ESRG+YMSTDPA VK+YGDGLL FN IL +V W+ +VQADDA QFA FKKRIEQ +DF Sbjct: 92 ESRGVYMSTDPAVVKRYGDGLLKFNAEILKIVDKWQAIVQADDAQQFATFKKRIEQFVDF 151 Query: 126 RKELVRRGIEIGAAAGREWGDNDANRDVRTALNKDLEALSKVYAERSKKLARETDTNRTM 185 RKELVRR EI AAGREWGDNDANR VR+ALNKDL+ LSKVY ER +++ +T+ NR + Sbjct: 152 RKELVRRANEISPAAGREWGDNDANRSVRSALNKDLDELSKVYLERGRRIGEDTEINRKL 211 Query: 186 ALVLTGLGAAALIVVVLGVLIIARSVARPLSQITTTIKRVAEGADHVEVPHVEVPHVGRS 245 +LVLT LG L++VV GV+IIARS+ARPLSQIT TI++VA GA+ +VEVPH GR+ Sbjct: 212 SLVLTALGGVMLLLVVAGVVIIARSIARPLSQITETIRQVATGAE-----NVEVPHAGRA 266 Query: 246 DEIGALAHAIKVFQDAMDRNRSLNAQVVQESEARDARGRHIETFVEAFRGTIGEVLRAVH 305 DE+G LA AI VFQ AM NR LN QV Q+SE R+AR RHIE VE FR IG V+R V Sbjct: 267 DEVGELARAIGVFQQAMAHNRDLNVQVSQDSEIREARARHIEAAVEEFRTAIGGVMRTVT 326 Query: 306 DNAATMRQTAQTIATVASDASGRAVAAAGATEQASSNVSAVAGAAEELSASVEEIGRQVK 365 +NAA MR TA+TI + +DA+ RAV AAGAT QAS+NVSAVA AAEELSASVEEIGRQ++ Sbjct: 327 ENAAAMRNTAETITRLTADANERAVTAAGATSQASTNVSAVASAAEELSASVEEIGRQIR 386 Query: 366 QSSGAVDQAGR 376 QS+GAV+Q G+ Sbjct: 387 QSAGAVEQTGQ 397 >ref|YP_001238992.1| hypothetical protein BBta_2961 [Bradyrhizobium sp. BTAi1] gb|ABQ35086.1| putative membrane protein [Bradyrhizobium sp. BTAi1] Length = 561 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 247/367 (67%), Positives = 294/367 (80%), Gaps = 5/367 (1%) Query: 10 RLYSTFALIAALTAAITFLSEYNARRNAELTEAVDLASRAALNVERVNSLVYAVVMESRG 69 +LY+ FAL A LTAAIT+LS+YN+RR AELT+A++ A+ AALNV+ VN LVYAVVMESRG Sbjct: 2 KLYAIFALFALLTAAITWLSDYNSRRGAELTKAIETANLAALNVQLVNGLVYAVVMESRG 61 Query: 70 IYMSTDPAAVKKYGDGLLAFNERILGVVKNWEMLVQADDAAQFAVFKKRIEQLIDFRKEL 129 +YMSTDPA VK+YGDGLL FN IL VV W+ +VQADDA QFA FKKRIEQ +DFRKEL Sbjct: 62 VYMSTDPAVVKRYGDGLLKFNAEILKVVDKWQAIVQADDAQQFATFKKRIEQFVDFRKEL 121 Query: 130 VRRGIEIGAAAGREWGDNDANRDVRTALNKDLEALSKVYAERSKKLARETDTNRTMALVL 189 VRR IEI AAGREWGDNDANR VR+ALNKDL+ LSKVY ER ++++ +T+TNR ++LVL Sbjct: 122 VRRAIEISPAAGREWGDNDANRSVRSALNKDLDELSKVYLERGRRISEDTETNRRLSLVL 181 Query: 190 TGLGAAALIVVVLGVLIIARSVARPLSQITTTIKRVAEGADHVEVPHVEVPHVGRSDEIG 249 TGLG L++V GV+IIARSVARPLSQIT TI++VA GA+ +VEVPH R+DEIG Sbjct: 182 TGLGGVMLLLVAAGVVIIARSVARPLSQITDTIRQVATGAE-----NVEVPHASRADEIG 236 Query: 250 ALAHAIKVFQDAMDRNRSLNAQVVQESEARDARGRHIETFVEAFRGTIGEVLRAVHDNAA 309 LA AI VFQ AM NR LN QV Q+SE R+AR RHIE VE FR I V+R V +NAA Sbjct: 237 ELARAIGVFQQAMAHNRDLNNQVSQDSEIREARARHIEAAVEDFRTAISGVMRTVTENAA 296 Query: 310 TMRQTAQTIATVASDASGRAVAAAGATEQASSNVSAVAGAAEELSASVEEIGRQVKQSSG 369 MR TA+TI + +DA+ RA AAGAT QAS+NVSAVA AAEELSASVEEIGRQ++QS+G Sbjct: 297 AMRSTAETITRLTADANERATTAAGATTQASTNVSAVASAAEELSASVEEIGRQIRQSAG 356 Query: 370 AVDQAGR 376 AV+Q G+ Sbjct: 357 AVEQTGQ 363 >ref|YP_001243236.1| hypothetical protein BBta_7477 [Bradyrhizobium sp. BTAi1] gb|ABQ39330.1| hypothetical protein BBta_7477 [Bradyrhizobium sp. BTAi1] Length = 550 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 101/224 (45%), Positives = 141/224 (62%), Gaps = 8/224 (3%) Query: 41 EAVDLASRAALNVERVNSLVYAVVMESRGIYMSTDPAAVKKYGDGLLAFNERILGVVKNW 100 EA+ ASR N+ER N+ +YAVVMESRGIYMS D ++Y D LLA ++ +V+ W Sbjct: 54 EALAAASR---NIERANATIYAVVMESRGIYMSADRNVARRYADSLLAKLRQLTKIVEEW 110 Query: 101 EMLVQADDAAQFAVFKKRIEQLIDFRKELVRRGIEIGAAAGREWGDNDANRDVRTALNKD 160 E L+ ADDAA FA F++RI+Q + FR E+ RR I +G++A RE GDND NR VRTALN+D Sbjct: 111 EALLPADDAATFAPFRQRIDQFVAFRTEMARRTISVGSSAARELGDNDENRAVRTALNED 170 Query: 161 LEALSKVYAERSKKLARETDTNRTMALVLTGLGAAALIVVVLGVLIIARSVARPLSQITT 220 LE LS++YA+R ++L D +A L GLG ++++ L + V PL I Sbjct: 171 LETLSQLYADRIRELGEAADARGMVAFYLGGLGLLIIVLIAAAALALRWGVLMPLLDIAR 230 Query: 221 TIKRVAEGADHVEVPHVEVPHVGRSDEIGALAHAIKVFQDAMDR 264 R+A G +++PH R DEIG +AHA++ +QD + R Sbjct: 231 VTDRIAAGRIKLKIPHAR-----RHDEIGHVAHAVETYQDNVFR 269 >ref|NP_768250.1| hypothetical protein blr1610 [Bradyrhizobium japonicum USDA 110] dbj|BAC46875.1| blr1610 [Bradyrhizobium japonicum USDA 110] Length = 328 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 111/250 (44%), Positives = 148/250 (59%), Gaps = 7/250 (2%) Query: 5 FSLAARLYSTFALIAALTAAITFLSEYNARRNAELTEA-VDLASRAALNVERVNSLVYAV 63 S+A ++YS + +T + +S R +D AS AA+N+ RVN+L+YA+ Sbjct: 80 LSVADKVYSIAGFLTIVTMFLLVMSVQCVRLQTNYRHMQIDSAS-AAVNIGRVNALIYAI 138 Query: 64 VMESRGIYMSTDPAAVKKYGDGLLAFNERILGVVKNWEMLVQADDAAQFAVFKKRIEQLI 123 VMESRGIYMST+PA VK++ D L+ + + V+ W V DD QF FK+R+ Q I Sbjct: 139 VMESRGIYMSTEPAKVKQFADELVKCSGELTAVMMRWGQTVHPDDLEQFEAFKQRVMQFI 198 Query: 124 DFRKELVRRGIEIGAAAGREWGDNDANRDVRTALNKDLEALSKVYAERSKKLARETDTNR 183 DFR ELVRRG+EI AA REW DN ANR VR+ LN DLEAL + Y +R+++ + D NR Sbjct: 199 DFRLELVRRGLEISPAAAREWDDNQANRTVRSKLNADLEALQRSYDKRAREADQLADENR 258 Query: 184 TMALVLTGLGAAALIVVVLGVLIIARSVARPLSQITTTIKRVAEGADHVEVPHVEVPHVG 243 A L LG AAL++ + VL++ SV LS I R+A G EVPH+ Sbjct: 259 YAAWYLFMLGLAALVLAAINVLVMRDSVVGRLSDIAQATDRIAAGDIKSEVPHLM----- 313 Query: 244 RSDEIGALAH 253 R DEIG LA Sbjct: 314 RHDEIGHLAQ 323