BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0055.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769642.1| phytoene synthase [Bradyrhizobium japonicum USD... 483 e-134 ref|YP_001204683.1| putative phytoene synthase [Bradyrhizobium s... 436 e-120 ref|YP_001238998.1| putative phytoene synthase [Bradyrhizobium s... 436 e-120 ref|NP_443763.1| squalene synthase; HpnD [Sinorhizobium fredii N... 431 e-119 ref|ZP_01047642.1| squalene/phytoene synthase [Nitrobacter sp. N... 430 e-118 >ref|NP_769642.1| phytoene synthase [Bradyrhizobium japonicum USDA 110] emb|CAA60248.1| unknown [Bradyrhizobium japonicum] dbj|BAC48267.1| blr3002 [Bradyrhizobium japonicum USDA 110] Length = 279 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 238/279 (85%), Positives = 253/279 (90%), Gaps = 1/279 (0%) Query: 1 MSAEAAA-NANYGSTASGSSFYAAMRILPHAQREAMFQIYSFCRQVDDIADSDGPRPERL 59 M+ EA + A+YGSTASGSSFYAAMRILPH QREAMFQIYSFCRQVDDIADSDGPR ERL Sbjct: 1 MTLEATSPGASYGSTASGSSFYAAMRILPHDQREAMFQIYSFCRQVDDIADSDGPREERL 60 Query: 60 AALQQWRDDIDALYEGRPPERLKDYVGSVKTFGLKREDFVAIVDGMEMDVPQDIRAPDLA 119 AALQ WR DIDALY+G PP RLKDYV SVKTFGLKREDF+AIVDGMEMDVPQDIRAPD+A Sbjct: 61 AALQAWRTDIDALYQGNPPPRLKDYVASVKTFGLKREDFLAIVDGMEMDVPQDIRAPDMA 120 Query: 120 TLDLYCDRVASAVGRLSVRVFGLPEDDGIQLAYHLGRALQLTNILRDIDEDAGLGRLYLP 179 TLDLYCDRVASAVGRLSVRVFGLPE+DGIQLAYHLGRALQLTNILRDIDEDAGLGRLYLP Sbjct: 121 TLDLYCDRVASAVGRLSVRVFGLPEEDGIQLAYHLGRALQLTNILRDIDEDAGLGRLYLP 180 Query: 180 REWLWHAGITNNDPARVTADRALPKVCAPLAERARMHFQKSDEIMKRNSRRAVRAPRIMS 239 RE L HAGIT+NDP RV A+RALPKVC PLA+RA++HF+KSDEIM RN RR VRAPRIMS Sbjct: 181 REALLHAGITSNDPNRVIAERALPKVCLPLAQRAKVHFEKSDEIMNRNKRRTVRAPRIMS 240 Query: 240 KYYRAILDLLIARGFAAPRAPVRVSKAAKIGILLRYAII 278 KYY +ILDLLIARGF APR PVRVSK +I ILLRYA I Sbjct: 241 KYYHSILDLLIARGFNAPREPVRVSKVTRILILLRYAFI 279 >ref|YP_001204683.1| putative phytoene synthase [Bradyrhizobium sp. ORS 278] emb|CAL76446.1| Putative phytoene synthase [Bradyrhizobium sp. ORS 278] Length = 279 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 222/279 (79%), Positives = 252/279 (90%), Gaps = 1/279 (0%) Query: 1 MSAEAAA-NANYGSTASGSSFYAAMRILPHAQREAMFQIYSFCRQVDDIADSDGPRPERL 59 M+ EA A N ++G+ ASGSSFYAAMRILP AQR+AMFQ+YSFCR+VDDIADSDGPRPERL Sbjct: 1 MTLEATADNIDHGTAASGSSFYAAMRILPRAQRDAMFQVYSFCREVDDIADSDGPRPERL 60 Query: 60 AALQQWRDDIDALYEGRPPERLKDYVGSVKTFGLKREDFVAIVDGMEMDVPQDIRAPDLA 119 AALQ+WRDDIDALY+G PP RL+DYV SVKTFGLKREDF+AI+DGMEMDVPQ+IRAPDLA Sbjct: 61 AALQKWRDDIDALYQGNPPPRLRDYVASVKTFGLKREDFLAIIDGMEMDVPQEIRAPDLA 120 Query: 120 TLDLYCDRVASAVGRLSVRVFGLPEDDGIQLAYHLGRALQLTNILRDIDEDAGLGRLYLP 179 TLDLYCDRVASAVGRLSVR+FG+PE+DGI LA+HLGRALQLTNILRDIDEDA +GRLYLP Sbjct: 121 TLDLYCDRVASAVGRLSVRIFGMPEEDGILLAHHLGRALQLTNILRDIDEDAAIGRLYLP 180 Query: 180 REWLWHAGITNNDPARVTADRALPKVCAPLAERARMHFQKSDEIMKRNSRRAVRAPRIMS 239 RE L AGIT +DPA+VT +RALPKVC +A RA+ HF+K+DEIM+RN RRAVRAPRIMS Sbjct: 181 REALLFAGITGDDPAKVTQERALPKVCNSVAVRAKTHFEKADEIMRRNRRRAVRAPRIMS 240 Query: 240 KYYRAILDLLIARGFAAPRAPVRVSKAAKIGILLRYAII 278 KYYRA+ DLL+ARGFA PR PVRVSK KI I+LRYA+I Sbjct: 241 KYYRAVFDLLMARGFALPREPVRVSKLTKISIILRYALI 279 >ref|YP_001238998.1| putative phytoene synthase [Bradyrhizobium sp. BTAi1] gb|ABQ35092.1| Putative phytoene synthase [Bradyrhizobium sp. BTAi1] Length = 279 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/279 (77%), Positives = 250/279 (89%), Gaps = 1/279 (0%) Query: 1 MSAEAAANA-NYGSTASGSSFYAAMRILPHAQREAMFQIYSFCRQVDDIADSDGPRPERL 59 M+ EA A++ ++G+ ASGSSFYAAMRILP AQR+AMFQ+YSFCR+VDDIADS+GPR ERL Sbjct: 1 MTLEATADSIDHGTAASGSSFYAAMRILPPAQRDAMFQVYSFCREVDDIADSNGPRSERL 60 Query: 60 AALQQWRDDIDALYEGRPPERLKDYVGSVKTFGLKREDFVAIVDGMEMDVPQDIRAPDLA 119 AALQ+WRDDIDALY+G PP RL+DYV SVKTFGLKREDF+AI+DGMEMDVPQ+IRAPDLA Sbjct: 61 AALQKWRDDIDALYQGNPPPRLRDYVSSVKTFGLKREDFLAIIDGMEMDVPQEIRAPDLA 120 Query: 120 TLDLYCDRVASAVGRLSVRVFGLPEDDGIQLAYHLGRALQLTNILRDIDEDAGLGRLYLP 179 TLDLYCDRVASAVGRLSVR+FG+PE+DGI LA+HLGRALQLTNILRDIDEDAG+GRLYLP Sbjct: 121 TLDLYCDRVASAVGRLSVRIFGMPEEDGILLAHHLGRALQLTNILRDIDEDAGIGRLYLP 180 Query: 180 REWLWHAGITNNDPARVTADRALPKVCAPLAERARMHFQKSDEIMKRNSRRAVRAPRIMS 239 RE L AGIT +DPA+V +RALPKVC +A RA+ HF+K+DEIM+RN RR VRAPRIM+ Sbjct: 181 REALLFAGITGDDPAKVVQERALPKVCNSVAIRAKTHFEKADEIMRRNRRRTVRAPRIMA 240 Query: 240 KYYRAILDLLIARGFAAPRAPVRVSKAAKIGILLRYAII 278 KYYRA+ DLL+ RGFA PR PVRVSK KIGI+LRYA I Sbjct: 241 KYYRAVFDLLLERGFAPPREPVRVSKLTKIGIILRYAFI 279 >ref|NP_443763.1| squalene synthase; HpnD [Sinorhizobium fredii NGR234] sp|P55350.1|Y4AC_RHISN RecName: Full=Putative phytoene synthase gb|AAB91601.1| squalene synthase; HpnD [Sinorhizobium fredii NGR234] Length = 279 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 214/278 (76%), Positives = 236/278 (84%) Query: 1 MSAEAAANANYGSTASGSSFYAAMRILPHAQREAMFQIYSFCRQVDDIADSDGPRPERLA 60 M AEAAA+AN+ STA GSSFY MR LP QREA+FQIYSFCRQVDDIADSD PR RLA Sbjct: 1 MRAEAAAHANHRSTALGSSFYLGMRTLPPVQREAIFQIYSFCRQVDDIADSDEPREHRLA 60 Query: 61 ALQQWRDDIDALYEGRPPERLKDYVGSVKTFGLKREDFVAIVDGMEMDVPQDIRAPDLAT 120 ALQQWRD IDALY+ PP RLKDY+ SV TFGLKREDF+A+VDGMEMDV QDIRAP +AT Sbjct: 61 ALQQWRDHIDALYQCVPPPRLKDYLASVTTFGLKREDFLAVVDGMEMDVLQDIRAPKMAT 120 Query: 121 LDLYCDRVASAVGRLSVRVFGLPEDDGIQLAYHLGRALQLTNILRDIDEDAGLGRLYLPR 180 LDLYCDRVASAVGR+SVRVFGL E+DGI LA+HLGRALQLTNILRDIDEDAGLGRLY+PR Sbjct: 121 LDLYCDRVASAVGRMSVRVFGLSEEDGIALAHHLGRALQLTNILRDIDEDAGLGRLYIPR 180 Query: 181 EWLWHAGITNNDPARVTADRALPKVCAPLAERARMHFQKSDEIMKRNSRRAVRAPRIMSK 240 E L HAGIT++DP +V AD+ALPK CAPLA+RA MHF +SDEIM N RR VRAP IMSK Sbjct: 181 ESLDHAGITSSDPHKVIADKALPKACAPLAQRAMMHFAESDEIMNCNPRRIVRAPTIMSK 240 Query: 241 YYRAILDLLIARGFAAPRAPVRVSKAAKIGILLRYAII 278 YRAILDLL+ RGFAAPR PVRV+ K IL RYA++ Sbjct: 241 CYRAILDLLLIRGFAAPREPVRVTNLTKRAILFRYALM 278 >ref|ZP_01047642.1| squalene/phytoene synthase [Nitrobacter sp. Nb-311A] gb|EAQ34402.1| squalene/phytoene synthase [Nitrobacter sp. Nb-311A] Length = 278 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 215/278 (77%), Positives = 240/278 (86%) Query: 1 MSAEAAANANYGSTASGSSFYAAMRILPHAQREAMFQIYSFCRQVDDIADSDGPRPERLA 60 M+ E AA+A+ G TAS SSFYAAMRILP AQREAMFQ+Y+FCR VDDIADSD PRPERLA Sbjct: 1 MTIETAADASSGVTASNSSFYAAMRILPRAQREAMFQVYTFCRYVDDIADSDRPRPERLA 60 Query: 61 ALQQWRDDIDALYEGRPPERLKDYVGSVKTFGLKREDFVAIVDGMEMDVPQDIRAPDLAT 120 ALQQWRDDIDALY G+PPERL+DY SV+TFGL+REDF+AI+DGMEMDV DIRAP+ AT Sbjct: 61 ALQQWRDDIDALYGGQPPERLRDYAVSVQTFGLRREDFLAIIDGMEMDVLADIRAPEDAT 120 Query: 121 LDLYCDRVASAVGRLSVRVFGLPEDDGIQLAYHLGRALQLTNILRDIDEDAGLGRLYLPR 180 LDLYCDRVASAVGRLSVRVFGLPE DGI L++HLGRALQLTNILRD+DEDAG+GRLYLPR Sbjct: 121 LDLYCDRVASAVGRLSVRVFGLPEQDGILLSHHLGRALQLTNILRDLDEDAGIGRLYLPR 180 Query: 181 EWLWHAGITNNDPARVTADRALPKVCAPLAERARMHFQKSDEIMKRNSRRAVRAPRIMSK 240 E L AGI DPA V ++ ALP+VCA L ERA+ HF +SD+IM RNSRRAVRAPRIMSK Sbjct: 181 EGLLQAGINCADPAAVISNPALPEVCAQLMERAKTHFVESDKIMDRNSRRAVRAPRIMSK 240 Query: 241 YYRAILDLLIARGFAAPRAPVRVSKAAKIGILLRYAII 278 YY AILDLL RGF PR+PVRVS AKI I+LRYA+I Sbjct: 241 YYHAILDLLQDRGFQPPRSPVRVSYPAKIAIVLRYALI 278