BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0020.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242987.1| transcriptional regulator [Bradyrhizobium sp... 496 e-138 ref|ZP_08631073.1| transcriptional regulator, LysR family [Brady... 489 e-136 ref|YP_001203021.1| transcriptional regulator [Bradyrhizobium sp... 487 e-136 ref|NP_769888.1| transcriptional regulator [Bradyrhizobium japon... 483 e-134 ref|YP_003889349.1| LysR family transcriptional regulator [Cyano... 295 6e-78 >ref|YP_001242987.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ39081.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 297 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 234/295 (79%), Positives = 265/295 (89%) Query: 1 MDKVASLQAFVKVVETGSFSEAGRQLRLSRSAISKYVGDLEGSLGVQLLNRTTRHASPNE 60 MDK++SL+AFVKVVE+GSF+EAGRQLRLSRSAISKY+G+LE SLGVQL+ RTTRHASP E Sbjct: 1 MDKLSSLRAFVKVVESGSFAEAGRQLRLSRSAISKYIGELEASLGVQLIVRTTRHASPTE 60 Query: 61 NGQLYFERALVILSEIDAADQAVTHLQSAPRGLLRINAPMSFGTLRLGPALADFMQMYPD 120 GQLYFERA+VIL+E+DAADQAV+ Q+APRGLLR+NAPMSFGT+RLGP +A+FM YP+ Sbjct: 61 AGQLYFERAVVILAELDAADQAVSQSQAAPRGLLRVNAPMSFGTMRLGPVVAEFMLRYPE 120 Query: 121 LQLQLVLSDDLVDPVQDGFDVTLRIADLESSSLIARKITPMPRVICASPDYLEKHGAPSH 180 LQLQ+VLSDDL+DPVQDGFDVTLRIA+LESSSL+ARKI P+ RVICA+P YL +HG P+ Sbjct: 121 LQLQIVLSDDLLDPVQDGFDVTLRIAELESSSLVARKIMPVERVICAAPAYLAQHGTPAS 180 Query: 181 PRDLRDHVSLTYGFLLTGNQWKLTGADGEHWIQPAWSLCVNNAEVLRDVAVSGRGIALIP 240 P LR H SLTYGFLLTGNQWKLTG DG+HWIQPAWSLCVNNAEVLRDVA+ G+GIALIP Sbjct: 181 PEQLRRHTSLTYGFLLTGNQWKLTGPDGDHWIQPAWSLCVNNAEVLRDVAIKGQGIALIP 240 Query: 241 EFIAADALRKGGLKTILKDFWAPPLTLYAIYPPTRHLSVKVRLFIDFLVQRFGRE 295 FIAADAL G L IL D+ APPL LYAIYPPTRHLSVKVRLFIDFLV+RFGRE Sbjct: 241 RFIAADALESGALTAILADYTAPPLALYAIYPPTRHLSVKVRLFIDFLVERFGRE 295 >ref|ZP_08631073.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06174.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium SG-6C] Length = 309 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 233/292 (79%), Positives = 261/292 (89%) Query: 1 MDKVASLQAFVKVVETGSFSEAGRQLRLSRSAISKYVGDLEGSLGVQLLNRTTRHASPNE 60 MDK+ASL+AFVKVVE GSFSEAGRQLRLSRSAISKYVGDLE SLGVQLLNRTTRHASPNE Sbjct: 1 MDKLASLRAFVKVVELGSFSEAGRQLRLSRSAISKYVGDLEESLGVQLLNRTTRHASPNE 60 Query: 61 NGQLYFERALVILSEIDAADQAVTHLQSAPRGLLRINAPMSFGTLRLGPALADFMQMYPD 120 NGQ+YFERAL IL++IDAADQAV HLQS PRGLLR+NAPMSFGTL+LG A+ADFM++ P+ Sbjct: 61 NGQMYFERALGILADIDAADQAVAHLQSTPRGLLRVNAPMSFGTLQLGSAIADFMEINPE 120 Query: 121 LQLQLVLSDDLVDPVQDGFDVTLRIADLESSSLIARKITPMPRVICASPDYLEKHGAPSH 180 L++ LVLSD+ VDPVQ GFDVTLRIADLESSSLIARKI P+ RVICA+P YL++HG P+H Sbjct: 121 LRIHLVLSDEQVDPVQGGFDVTLRIADLESSSLIARKIVPIERVICAAPSYLKQHGVPAH 180 Query: 181 PRDLRDHVSLTYGFLLTGNQWKLTGADGEHWIQPAWSLCVNNAEVLRDVAVSGRGIALIP 240 P DLR H +LTYGFLLTGNQWKLTG DG+HWIQP+W LC NNAEVL D AV GRG+AL+P Sbjct: 181 PNDLRSHAALTYGFLLTGNQWKLTGKDGDHWIQPSWLLCANNAEVLCDAAVKGRGVALLP 240 Query: 241 EFIAADALRKGGLKTILKDFWAPPLTLYAIYPPTRHLSVKVRLFIDFLVQRF 292 FIA ALR G L T+L D+ APPLTLYAIYPPTRHL+VKVRLFIDFLV+RF Sbjct: 241 TFIAGKALRAGKLHTVLDDYKAPPLTLYAIYPPTRHLAVKVRLFIDFLVERF 292 >ref|YP_001203021.1| transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL74784.1| putative transcriptional regulatory protein domain, LysR family [Bradyrhizobium sp. ORS 278] Length = 297 Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust. Identities = 230/294 (78%), Positives = 262/294 (89%) Query: 1 MDKVASLQAFVKVVETGSFSEAGRQLRLSRSAISKYVGDLEGSLGVQLLNRTTRHASPNE 60 MDK++SL+AFVKVVE+GSF+EAGRQLRLSRSAISKY+G+LE SLGVQL+ RTTRHASP E Sbjct: 1 MDKLSSLRAFVKVVESGSFAEAGRQLRLSRSAISKYIGELEQSLGVQLIVRTTRHASPTE 60 Query: 61 NGQLYFERALVILSEIDAADQAVTHLQSAPRGLLRINAPMSFGTLRLGPALADFMQMYPD 120 GQ YFERA+ IL+E+DAADQAV+ Q+APRGLLR+NAPMSFGT+RLGP +ADFM +P+ Sbjct: 61 TGQRYFERAVAILAELDAADQAVSQSQAAPRGLLRVNAPMSFGTMRLGPVVADFMVRFPE 120 Query: 121 LQLQLVLSDDLVDPVQDGFDVTLRIADLESSSLIARKITPMPRVICASPDYLEKHGAPSH 180 LQLQ+VLSDDL+DPVQDGFDVTLRIA+LESSSL+AR+ITP+ RVICA+P YL +HG P Sbjct: 121 LQLQIVLSDDLLDPVQDGFDVTLRIAELESSSLVARRITPVDRVICAAPAYLARHGTPES 180 Query: 181 PRDLRDHVSLTYGFLLTGNQWKLTGADGEHWIQPAWSLCVNNAEVLRDVAVSGRGIALIP 240 P +LR H SLTYGFLLTGNQWKLTG DG HWIQPAWSLCVNNAEVLRDVA+ G+GIALIP Sbjct: 181 PEELRRHSSLTYGFLLTGNQWKLTGRDGNHWIQPAWSLCVNNAEVLRDVAIKGQGIALIP 240 Query: 241 EFIAADALRKGGLKTILKDFWAPPLTLYAIYPPTRHLSVKVRLFIDFLVQRFGR 294 FIAADAL G L IL D+ APPL LYAIYPPTRHLSVKVRLFIDFLV+RFG+ Sbjct: 241 RFIAADALASGALTAILSDYTAPPLALYAIYPPTRHLSVKVRLFIDFLVERFGK 294 >ref|NP_769888.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48513.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 297 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 238/288 (82%), Positives = 265/288 (92%) Query: 11 VKVVETGSFSEAGRQLRLSRSAISKYVGDLEGSLGVQLLNRTTRHASPNENGQLYFERAL 70 +KVVE+GSF+EAGRQLRLSRSAISKY+ DLE SLGVQLLNRTTRHASP ENGQ YFERA+ Sbjct: 1 MKVVESGSFAEAGRQLRLSRSAISKYIADLEESLGVQLLNRTTRHASPTENGQRYFERAV 60 Query: 71 VILSEIDAADQAVTHLQSAPRGLLRINAPMSFGTLRLGPALADFMQMYPDLQLQLVLSDD 130 VILSEI+AADQAV QSAPRGLLR+NAPMSFGT+RLGP LADFM Y +LQLQ+VLSDD Sbjct: 61 VILSEIEAADQAVAQAQSAPRGLLRVNAPMSFGTMRLGPVLADFMARYGELQLQIVLSDD 120 Query: 131 LVDPVQDGFDVTLRIADLESSSLIARKITPMPRVICASPDYLEKHGAPSHPRDLRDHVSL 190 L+DPVQDGFDVTLRIA+LESSSLIARKITP+ R+ICASPDYL +HG P HP+DLR+H SL Sbjct: 121 LLDPVQDGFDVTLRIAELESSSLIARKITPVARMICASPDYLARHGTPKHPQDLREHASL 180 Query: 191 TYGFLLTGNQWKLTGADGEHWIQPAWSLCVNNAEVLRDVAVSGRGIALIPEFIAADALRK 250 TYGFLLTGNQWKLTG+DG+HWIQPAWSLCVNNAEVLRDVA+ GRG+AL+PEFIAADALRK Sbjct: 181 TYGFLLTGNQWKLTGSDGDHWIQPAWSLCVNNAEVLRDVAIKGRGLALLPEFIAADALRK 240 Query: 251 GGLKTILKDFWAPPLTLYAIYPPTRHLSVKVRLFIDFLVQRFGREVDA 298 G L T+L D+ APPL LYA+YPPTRHLSVKVRLFIDFLV+RFGRE +A Sbjct: 241 GELLTVLDDYSAPPLALYAVYPPTRHLSVKVRLFIDFLVERFGREDEA 288 >ref|YP_003889349.1| LysR family transcriptional regulator [Cyanothece sp. PCC 7822] gb|ADN16074.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 7822] Length = 304 Score = 295 bits (755), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 142/296 (47%), Positives = 197/296 (66%), Gaps = 1/296 (0%) Query: 1 MDKVASLQAFVKVVETGSFSEAGRQLRLSRSAISKYVGDLEGSLGVQLLNRTTRHASPNE 60 MDK S++AF +V++ G F+ A R++ LSRS ++K V +LE LGVQLL RTTR +P Sbjct: 1 MDKFESIKAFTQVIKAGGFAAAAREMNLSRSMVNKLVINLENELGVQLLQRTTRQVTPTA 60 Query: 61 NGQLYFERALVILSEIDAADQAVTHLQSAPRGLLRINAPMSFGTLRLGPALADFMQMYPD 120 G ++ER L IL+E++ A+ AV+ LQ P+G+L+INAPMSFGTL L PA+ADFM YPD Sbjct: 61 TGLAFYERCLSILAELEEAELAVSQLQREPKGILKINAPMSFGTLHLAPAIADFMLQYPD 120 Query: 121 LQLQLVLSDDLVDPVQDGFDVTLRIAD-LESSSLIARKITPMPRVICASPDYLEKHGAPS 179 LQ+QL L D +DP+ +GFDVT+RI +++ LI + + +V+CA+P Y +K G P Sbjct: 121 LQVQLTLEDRFIDPIAEGFDVTVRICKPFQAAGLIVHPLVGVKQVLCAAPSYFDKRGIPK 180 Query: 180 HPRDLRDHVSLTYGFLLTGNQWKLTGADGEHWIQPAWSLCVNNAEVLRDVAVSGRGIALI 239 HP++L +H L YG+L GNQWKL G GE + LC NN E L A+ G GI L+ Sbjct: 181 HPKELGEHSCLHYGYLAAGNQWKLFGPKGECTVNINGVLCSNNGEALCSAALKGLGIVLL 240 Query: 240 PEFIAADALRKGGLKTILKDFWAPPLTLYAIYPPTRHLSVKVRLFIDFLVQRFGRE 295 P FI D L+ G L +L D++ L +Y IYP RHLS+K++LF +F+ FG + Sbjct: 241 PTFIIGDELKTGSLVQVLPDYFGLELFVYVIYPTNRHLSIKIQLFTEFVKGVFGEQ 296