BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0155.0040.p (347 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768270.1| GDP-fucose synthetase [Bradyrhizobium japonicum... 540 e-151 ref|YP_001241570.1| GDP-4-dehydro-6-deoxy-D-mannose epimerase /G... 535 e-150 ref|YP_001204267.1| bifunctional GDP-fucose synthetase GDP-4-deh... 517 e-144 ref|NP_772104.1| GDP-fucose synthetase [Bradyrhizobium japonicum... 506 e-141 ref|YP_318990.1| NAD-dependent epimerase/dehydratase [Nitrobacte... 504 e-141 >ref|NP_768270.1| GDP-fucose synthetase [Bradyrhizobium japonicum USDA 110] dbj|BAC46895.1| GDP-fucose synthetase [Bradyrhizobium japonicum USDA 110] Length = 335 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 262/326 (80%), Positives = 289/326 (88%), Gaps = 3/326 (0%) Query: 1 MASTAFELKGKTVFVAGHRGMVGSALMRRLAREEADLLTVSRSEVDLRDQAAVNAWFAAK 60 +A+ FEL+GK+V+VAGHRGMVG+AL+RRLAREE L+TV R EVDL +QAAV WFA Sbjct: 4 VANAPFELRGKSVYVAGHRGMVGAALVRRLAREEVRLVTVDRREVDLCNQAAVFDWFART 63 Query: 61 RPQAVFLAAAKVGGIVANNTLRAEFLYDNLAISSNVIQAARANGCEKLMFFGSSCIYPRL 120 RPQ +FLAAAKVGGIVANNTLRAEF+YDN+AI++NVIQAA NG EKLMF GSSCIYP+L Sbjct: 64 RPQVIFLAAAKVGGIVANNTLRAEFIYDNIAIAANVIQAAHQNGAEKLMFLGSSCIYPKL 123 Query: 121 APQPLREDSMLTGPLEPTNEPYAIAKIAGIKMAEAYRSQYGADFISVMPTNLYGPGDNYH 180 APQPLREDS+LTGPLEPTNEPYAIAKIAGIKMAEAYRSQYG+DFISVMPTNLYGPGDNYH Sbjct: 124 APQPLREDSVLTGPLEPTNEPYAIAKIAGIKMAEAYRSQYGSDFISVMPTNLYGPGDNYH 183 Query: 181 PEYSHVVAALIRRFHEAKVSDAGNVAVWGTGTPRREFLYVDDLADACIHLMKTYSSPELV 240 PE SHVVAALIRRFHEAKVS A V VWGTGTPRREFLYVDD+ADAC+HLMKTYSSPE V Sbjct: 184 PELSHVVAALIRRFHEAKVSGAKRVIVWGTGTPRREFLYVDDMADACVHLMKTYSSPEPV 243 Query: 241 NIGTGEDITIAEFALMVAAAVGFRGEISFDTSRPDGTPRKLLDISRLARLGWHAQTALED 300 NIGTGEDITIA+ ALMVAAAVGFRGEIS DTSRPDGTPRKLLD+SRL+RLGW A T+L + Sbjct: 244 NIGTGEDITIADLALMVAAAVGFRGEISLDTSRPDGTPRKLLDVSRLSRLGWRATTSLTE 303 Query: 301 GIQLAYRAYLADSK---WTALLVPDK 323 GIQLAYR + A+ + LLV DK Sbjct: 304 GIQLAYRVFCAERDGRLQSDLLVLDK 329 >ref|YP_001241570.1| GDP-4-dehydro-6-deoxy-D-mannose epimerase /GDP-4-dehydro-6-L-deoxygalactose reductase [Bradyrhizobium sp. BTAi1] gb|ABQ37664.1| GDP-4-dehydro-6-deoxy-D-mannose epimerase /GDP-4-dehydro-6-L-deoxygalactose reductase [Bradyrhizobium sp. BTAi1] Length = 316 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 257/313 (82%), Positives = 281/313 (89%) Query: 1 MASTAFELKGKTVFVAGHRGMVGSALMRRLAREEADLLTVSRSEVDLRDQAAVNAWFAAK 60 MA+T FEL GK VFVAGHRGMVGSAL+RRL RE L+TV RSEVDLRDQAAV AWFA Sbjct: 1 MAATRFELAGKRVFVAGHRGMVGSALVRRLVRENVALMTVPRSEVDLRDQAAVFAWFARA 60 Query: 61 RPQAVFLAAAKVGGIVANNTLRAEFLYDNLAISSNVIQAARANGCEKLMFFGSSCIYPRL 120 +PQ VFLAAAKVGGIVANNTLRAEF+YDNLAI++NVI AA NG EKLMF GSSCIYP+L Sbjct: 61 KPQVVFLAAAKVGGIVANNTLRAEFIYDNLAIATNVIHAAHVNGVEKLMFLGSSCIYPKL 120 Query: 121 APQPLREDSMLTGPLEPTNEPYAIAKIAGIKMAEAYRSQYGADFISVMPTNLYGPGDNYH 180 A QPLRED+MLTG LEPTNEPYAIAKIAGIKM EAYRSQYGADFI+VMPTNLYGPGDNYH Sbjct: 121 AAQPLREDAMLTGALEPTNEPYAIAKIAGIKMVEAYRSQYGADFINVMPTNLYGPGDNYH 180 Query: 181 PEYSHVVAALIRRFHEAKVSDAGNVAVWGTGTPRREFLYVDDLADACIHLMKTYSSPELV 240 PEYSHVVAALIRRFHEAK SDA V VWGTGTPRREFLYVDD+ADAC+HLMKT+S+PELV Sbjct: 181 PEYSHVVAALIRRFHEAKRSDAAEVVVWGTGTPRREFLYVDDMADACLHLMKTFSAPELV 240 Query: 241 NIGTGEDITIAEFALMVAAAVGFRGEISFDTSRPDGTPRKLLDISRLARLGWHAQTALED 300 NIGTGEDITIA+FA +VAAAVG+RG ISFD SRPDGTPRKLLD+SRLA LGW A T LE+ Sbjct: 241 NIGTGEDITIADFARVVAAAVGYRGRISFDPSRPDGTPRKLLDVSRLAALGWRATTPLEE 300 Query: 301 GIQLAYRAYLADS 313 GI+LAY+A+L ++ Sbjct: 301 GIRLAYQAFLRET 313 >ref|YP_001204267.1| bifunctional GDP-fucose synthetase GDP-4-dehydro-6-deoxy-D-mannose epimerase/GDP-4-dehydro-6-L-deoxygalactose reductase [Bradyrhizobium sp. ORS 278] emb|CAL76030.1| bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase; GDP-4-dehydro-6-L-deoxygalactose reductase [Bradyrhizobium sp. ORS 278] Length = 318 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 247/313 (78%), Positives = 272/313 (86%) Query: 1 MASTAFELKGKTVFVAGHRGMVGSALMRRLAREEADLLTVSRSEVDLRDQAAVNAWFAAK 60 MA F+L K VFVAGHRG+VGSAL+RRLA E +L TVSR EVDL DQAAV AWFA Sbjct: 1 MAPATFDLAHKRVFVAGHRGLVGSALVRRLASEGVELQTVSRGEVDLSDQAAVFAWFARA 60 Query: 61 RPQAVFLAAAKVGGIVANNTLRAEFLYDNLAISSNVIQAARANGCEKLMFFGSSCIYPRL 120 +PQ VFLAAAKVGGIVANNTLRAEF+YDN+AI++NVI AA NG EKLMF GSSCIYP+L Sbjct: 61 KPQVVFLAAAKVGGIVANNTLRAEFIYDNIAIATNVIHAAHVNGVEKLMFLGSSCIYPKL 120 Query: 121 APQPLREDSMLTGPLEPTNEPYAIAKIAGIKMAEAYRSQYGADFISVMPTNLYGPGDNYH 180 A QPLRED+MLTGPLEPTNEPYAIAKIAGIKM EAYRSQYGADFI+VMPTNLYGPGDNYH Sbjct: 121 AAQPLREDAMLTGPLEPTNEPYAIAKIAGIKMVEAYRSQYGADFINVMPTNLYGPGDNYH 180 Query: 181 PEYSHVVAALIRRFHEAKVSDAGNVAVWGTGTPRREFLYVDDLADACIHLMKTYSSPELV 240 PEYSHVVAALIRRFHEAK++DA V VWGTG PRREFLYVDD+ADAC+HLMKTYS P LV Sbjct: 181 PEYSHVVAALIRRFHEAKLADAPEVIVWGTGKPRREFLYVDDMADACVHLMKTYSEPGLV 240 Query: 241 NIGTGEDITIAEFALMVAAAVGFRGEISFDTSRPDGTPRKLLDISRLARLGWHAQTALED 300 NIGTGEDI+IA+FA MVA AVG+ G I FD SRPDGTPRKLLD+ RL LGW A T+L+D Sbjct: 241 NIGTGEDISIADFAAMVATAVGYEGRIRFDPSRPDGTPRKLLDVGRLTSLGWSATTSLQD 300 Query: 301 GIQLAYRAYLADS 313 GI+ AYRAYLA++ Sbjct: 301 GIRGAYRAYLAET 313 >ref|NP_772104.1| GDP-fucose synthetase [Bradyrhizobium japonicum USDA 110] dbj|BAC50729.1| GDP-fucose synthetase [Bradyrhizobium japonicum USDA 110] Length = 317 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 242/303 (79%), Positives = 267/303 (88%) Query: 1 MASTAFELKGKTVFVAGHRGMVGSALMRRLAREEADLLTVSRSEVDLRDQAAVNAWFAAK 60 M + FELKG++V+VAGHRGMVGSAL+RRLA E+ L+T R EVDL +QAAV WFA Sbjct: 1 MTNAPFELKGRSVYVAGHRGMVGSALVRRLAGEDVKLVTADRREVDLCNQAAVFDWFAKV 60 Query: 61 RPQAVFLAAAKVGGIVANNTLRAEFLYDNLAISSNVIQAARANGCEKLMFFGSSCIYPRL 120 RPQ VFLAAAKVGGIVANNTLRAEF+YDN+AI++NVI AA NG EKLMF GSSCIYP+L Sbjct: 61 RPQVVFLAAAKVGGIVANNTLRAEFIYDNIAIAANVIHAAHRNGAEKLMFLGSSCIYPKL 120 Query: 121 APQPLREDSMLTGPLEPTNEPYAIAKIAGIKMAEAYRSQYGADFISVMPTNLYGPGDNYH 180 APQPLRE+S+LTGPLEPTNEPYAIAKIAGIK+AEAYRSQYG DFISVMPTNLYGPGDNYH Sbjct: 121 APQPLREESVLTGPLEPTNEPYAIAKIAGIKIAEAYRSQYGCDFISVMPTNLYGPGDNYH 180 Query: 181 PEYSHVVAALIRRFHEAKVSDAGNVAVWGTGTPRREFLYVDDLADACIHLMKTYSSPELV 240 PE SHVVAALIRRFHEAKVS A V VWGTGTPRREFLYVDD+ADAC+HLMKTYS L+ Sbjct: 181 PEMSHVVAALIRRFHEAKVSGAKGVVVWGTGTPRREFLYVDDMADACVHLMKTYSGAGLI 240 Query: 241 NIGTGEDITIAEFALMVAAAVGFRGEISFDTSRPDGTPRKLLDISRLARLGWHAQTALED 300 NIGTGEDITIAEFA +VA VG+ GEISFDTSRPDGTPRKLLD+SRLA LGW A T+LED Sbjct: 241 NIGTGEDITIAEFARVVAEVVGYSGEISFDTSRPDGTPRKLLDVSRLAGLGWRATTSLED 300 Query: 301 GIQ 303 G++ Sbjct: 301 GLK 303 >ref|YP_318990.1| NAD-dependent epimerase/dehydratase [Nitrobacter winogradskyi Nb-255] gb|ABA05638.1| NAD-dependent epimerase/dehydratase [Nitrobacter winogradskyi Nb-255] Length = 316 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/310 (76%), Positives = 267/310 (86%) Query: 1 MASTAFELKGKTVFVAGHRGMVGSALMRRLAREEADLLTVSRSEVDLRDQAAVNAWFAAK 60 M T FEL GK+VFVAGHRGMVGSAL+RRLA+E LLTV R EVDLRDQAAVN WFA Sbjct: 1 MVKTPFELAGKSVFVAGHRGMVGSALVRRLAQEHVTLLTVDRREVDLRDQAAVNQWFAGH 60 Query: 61 RPQAVFLAAAKVGGIVANNTLRAEFLYDNLAISSNVIQAARANGCEKLMFFGSSCIYPRL 120 PQ VFLAAAKVGGI+AN+TLR EF+YDNL I++NVI AA +G +KL+F GSSCIYP+L Sbjct: 61 HPQVVFLAAAKVGGIIANDTLRGEFIYDNLIIAANVIHAAHVHGVQKLLFLGSSCIYPKL 120 Query: 121 APQPLREDSMLTGPLEPTNEPYAIAKIAGIKMAEAYRSQYGADFISVMPTNLYGPGDNYH 180 A QPLREDS+LTGPLEPTNEPYAIAKIAG+KM EAYR QY +DFI+VMPTNLYGPGDNYH Sbjct: 121 AEQPLREDSLLTGPLEPTNEPYAIAKIAGVKMVEAYRRQYDSDFINVMPTNLYGPGDNYH 180 Query: 181 PEYSHVVAALIRRFHEAKVSDAGNVAVWGTGTPRREFLYVDDLADACIHLMKTYSSPELV 240 PEYSHVVA LIRRFHEA+V+ A V VWG+G PRREFL VDDLADACIHL+KTYS ELV Sbjct: 181 PEYSHVVAGLIRRFHEARVAGASEVTVWGSGKPRREFLCVDDLADACIHLLKTYSDSELV 240 Query: 241 NIGTGEDITIAEFALMVAAAVGFRGEISFDTSRPDGTPRKLLDISRLARLGWHAQTALED 300 NIGTGEDITIA+FA +VA+ VG+ G I+FDTSRPDGTPRKLLD+SRLARLGW A+ L + Sbjct: 241 NIGTGEDITIADFAHLVASTVGYGGRINFDTSRPDGTPRKLLDVSRLARLGWRAKVPLPE 300 Query: 301 GIQLAYRAYL 310 GI+LAY A+L Sbjct: 301 GIKLAYEAFL 310