BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0155.0035.p         (297 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772604.1| ABC transporter permease protein [Bradyrhizobiu...   519   e-145
ref|YP_001241575.1| putative high-affinity branched-chain amino ...   515   e-144
ref|YP_001993542.1| inner-membrane translocator [Rhodopseudomona...   508   e-142
ref|NP_949379.1| inner-membrane translocator [Rhodopseudomonas p...   507   e-142
ref|YP_001207167.1| putative high-affinity branched-chain amino ...   507   e-141

>ref|NP_772604.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC51229.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
          Length = 297

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/297 (93%), Positives = 291/297 (97%)

Query: 1   MNIQFLIQLIVNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLVGAWVCWALLTKYQ 60
           MN  FLIQL+VNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLVGAWVCWALL KYQ
Sbjct: 1   MNTAFLIQLLVNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLVGAWVCWALLAKYQ 60

Query: 61  VPFWVGMPITLVFMFIFGIAIQVVILRPMIGEPIISVIMVTIGLSTVFQAALKWIFGVNP 120
           VPFW+GMP+TLVFMF+FGIAIQV+ILRPMIGEPIISVIMVTIGLSTV QA LKW+FGVNP
Sbjct: 61  VPFWIGMPMTLVFMFVFGIAIQVLILRPMIGEPIISVIMVTIGLSTVLQATLKWMFGVNP 120

Query: 121 QPFPRVFQSQSVSLFGLQIQTVYVMSLVVSLAMMVGMAWFFRASKYGLAMRATAFNQQVA 180
           QPFPRVF+SQSVSLFGLQIQTVYVMSLVVS+AMM+GMAWFFRASKYGLAMRATAFNQQVA
Sbjct: 121 QPFPRVFESQSVSLFGLQIQTVYVMSLVVSVAMMIGMAWFFRASKYGLAMRATAFNQQVA 180

Query: 181 QSLGISVKNVFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSVGG 240
           QSLGISVK+VFAMAWAISATVSAVAGVVVAVVNGVSSGL+AYGIKVFPAAILGGLDSVGG
Sbjct: 181 QSLGISVKSVFAMAWAISATVSAVAGVVVAVVNGVSSGLAAYGIKVFPAAILGGLDSVGG 240

Query: 241 AVLGGIIIGLLENVAQYVDSQYLHWGNLYEIAPFYVLIIILMIKPYGLFGTKDIERV 297
           AVLGGIIIGLLENVAQYVDS+YLHWGNLYEIAPFYVLII+LMIKPYGLFGT DIER+
Sbjct: 241 AVLGGIIIGLLENVAQYVDSEYLHWGNLYEIAPFYVLIIVLMIKPYGLFGTHDIERI 297


>ref|YP_001241575.1| putative high-affinity branched-chain amino acid transport system
           permease [Bradyrhizobium sp. BTAi1]
 gb|ABQ37669.1| amino acid/amide ABC transporter membrane protein 1, HAAT family
           [Bradyrhizobium sp. BTAi1]
          Length = 297

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/297 (92%), Positives = 289/297 (97%)

Query: 1   MNIQFLIQLIVNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLVGAWVCWALLTKYQ 60
           MN  FLIQL+VNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLL+GAWVCW LLTKYQ
Sbjct: 1   MNTSFLIQLLVNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLIGAWVCWLLLTKYQ 60

Query: 61  VPFWVGMPITLVFMFIFGIAIQVVILRPMIGEPIISVIMVTIGLSTVFQAALKWIFGVNP 120
           VPFWVGMP+TLVFMF FGIA+QVVILRPMIGEPIISVIMVTIGLSTVFQAALKW+FGVNP
Sbjct: 61  VPFWVGMPLTLVFMFAFGIAVQVVILRPMIGEPIISVIMVTIGLSTVFQAALKWMFGVNP 120

Query: 121 QPFPRVFQSQSVSLFGLQIQTVYVMSLVVSLAMMVGMAWFFRASKYGLAMRATAFNQQVA 180
           QPFP VF S++V LFGLQIQTVYVMSL VS+AMM+GMAWFF+ASKYGLAMRATAFNQQVA
Sbjct: 121 QPFPPVFASKAVDLFGLQIQTVYVMSLAVSVAMMLGMAWFFKASKYGLAMRATAFNQQVA 180

Query: 181 QSLGISVKNVFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSVGG 240
           QSLGISVKNVFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSVGG
Sbjct: 181 QSLGISVKNVFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSVGG 240

Query: 241 AVLGGIIIGLLENVAQYVDSQYLHWGNLYEIAPFYVLIIILMIKPYGLFGTKDIERV 297
           AVLGGIIIGLLEN+AQYVDSQYLHWGNLYEIAPFYVLI+ILMIKPYGLFGTKDIER+
Sbjct: 241 AVLGGIIIGLLENIAQYVDSQYLHWGNLYEIAPFYVLILILMIKPYGLFGTKDIERI 297


>ref|YP_001993542.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1]
 gb|ACF03067.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1]
          Length = 301

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/297 (90%), Positives = 288/297 (96%)

Query: 1   MNIQFLIQLIVNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLVGAWVCWALLTKYQ 60
           MN   LIQL+VNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLL+GAWVCW LL KYQ
Sbjct: 5   MNSHLLIQLLVNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLIGAWVCWTLLAKYQ 64

Query: 61  VPFWVGMPITLVFMFIFGIAIQVVILRPMIGEPIISVIMVTIGLSTVFQAALKWIFGVNP 120
           +PFWVGMPITLVFMFIFGIA+Q+++LRPMIGEPIISVIMVTI LSTVFQAALKWIFGVNP
Sbjct: 65  LPFWVGMPITLVFMFIFGIAVQIIVLRPMIGEPIISVIMVTIALSTVFQAALKWIFGVNP 124

Query: 121 QPFPRVFQSQSVSLFGLQIQTVYVMSLVVSLAMMVGMAWFFRASKYGLAMRATAFNQQVA 180
           QPFP++F +QS+S+ GLQIQTVYVMSLVVS+AMM+GMAWFFR SKYGLAMRATAFNQQVA
Sbjct: 125 QPFPQIFTTQSISIGGLQIQTVYVMSLVVSVAMMIGMAWFFRVSKYGLAMRATAFNQQVA 184

Query: 181 QSLGISVKNVFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSVGG 240
           QSLGISVK+VFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDS+GG
Sbjct: 185 QSLGISVKSVFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSIGG 244

Query: 241 AVLGGIIIGLLENVAQYVDSQYLHWGNLYEIAPFYVLIIILMIKPYGLFGTKDIERV 297
           AVLGGIIIGLLEN+AQYVDS+YLHWGNLYEIAPFYVLIIILMIKPYGLFGTKDIER+
Sbjct: 245 AVLGGIIIGLLENIAQYVDSEYLHWGNLYEIAPFYVLIIILMIKPYGLFGTKDIERI 301


>ref|NP_949379.1| inner-membrane translocator [Rhodopseudomonas palustris CGA009]
 emb|CAE29484.1| possible ABC transporter, permease protein [Rhodopseudomonas
           palustris CGA009]
          Length = 312

 Score =  507 bits (1305), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 268/297 (90%), Positives = 288/297 (96%)

Query: 1   MNIQFLIQLIVNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLVGAWVCWALLTKYQ 60
           MN   LIQL+VNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLL+GAWVCW LL KYQ
Sbjct: 16  MNSHLLIQLLVNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLIGAWVCWTLLAKYQ 75

Query: 61  VPFWVGMPITLVFMFIFGIAIQVVILRPMIGEPIISVIMVTIGLSTVFQAALKWIFGVNP 120
           +PFWVGMPITLVFMFIFGIA+Q+++LRPMIGEPIISVIMVTI LSTVFQAALKWIFGVNP
Sbjct: 76  LPFWVGMPITLVFMFIFGIAVQIIVLRPMIGEPIISVIMVTIALSTVFQAALKWIFGVNP 135

Query: 121 QPFPRVFQSQSVSLFGLQIQTVYVMSLVVSLAMMVGMAWFFRASKYGLAMRATAFNQQVA 180
           QPFP++F ++S+S+ GLQIQTVYVMSLVVS+AMM+GMAWFFR SKYGLAMRATAFNQQVA
Sbjct: 136 QPFPQIFTTRSISIGGLQIQTVYVMSLVVSVAMMIGMAWFFRVSKYGLAMRATAFNQQVA 195

Query: 181 QSLGISVKNVFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSVGG 240
           QSLGISVK+VFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDS+GG
Sbjct: 196 QSLGISVKSVFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSIGG 255

Query: 241 AVLGGIIIGLLENVAQYVDSQYLHWGNLYEIAPFYVLIIILMIKPYGLFGTKDIERV 297
           AVLGGIIIGLLEN+AQYVDS+YLHWGNLYEIAPFYVLIIILMIKPYGLFGTKDIER+
Sbjct: 256 AVLGGIIIGLLENIAQYVDSEYLHWGNLYEIAPFYVLIIILMIKPYGLFGTKDIERI 312


>ref|YP_001207167.1| putative high-affinity branched-chain amino acid transport system
           permease [Bradyrhizobium sp. ORS 278]
 emb|CAL78950.1| putative High-affinity branched-chain amino acid transport system
           permease protein [Bradyrhizobium sp. ORS 278]
          Length = 297

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/297 (91%), Positives = 288/297 (96%)

Query: 1   MNIQFLIQLIVNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLVGAWVCWALLTKYQ 60
           MN  FLIQL+VNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLL+GAWVCW LLTK+Q
Sbjct: 1   MNTAFLIQLLVNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLIGAWVCWTLLTKFQ 60

Query: 61  VPFWVGMPITLVFMFIFGIAIQVVILRPMIGEPIISVIMVTIGLSTVFQAALKWIFGVNP 120
           VPFW GMP++L+FMF FGIAIQVVILRPMIGEPIISVIMVTIGLSTVFQAALKWI+GVNP
Sbjct: 61  VPFWAGMPLSLIFMFAFGIAIQVVILRPMIGEPIISVIMVTIGLSTVFQAALKWIYGVNP 120

Query: 121 QPFPRVFQSQSVSLFGLQIQTVYVMSLVVSLAMMVGMAWFFRASKYGLAMRATAFNQQVA 180
           QPFP VF S++V +FGLQIQTVYVMSLVVS+ MM+GMAWFF+ASKYGLAMRATAFNQQVA
Sbjct: 121 QPFPPVFSSKAVDIFGLQIQTVYVMSLVVSVLMMLGMAWFFKASKYGLAMRATAFNQQVA 180

Query: 181 QSLGISVKNVFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSVGG 240
           QSLGISVK+VFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSVGG
Sbjct: 181 QSLGISVKSVFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSVGG 240

Query: 241 AVLGGIIIGLLENVAQYVDSQYLHWGNLYEIAPFYVLIIILMIKPYGLFGTKDIERV 297
           AVLGGIIIGLLEN+AQYVDSQYLHWGNLYEIAPFYVLIIILMIKPYGLFGT+DIER+
Sbjct: 241 AVLGGIIIGLLENIAQYVDSQYLHWGNLYEIAPFYVLIIILMIKPYGLFGTRDIERI 297