BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0155.0030.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241579.1| putative phenylacetate-CoA ligase [Bradyrhiz... 684 0.0 ref|YP_001207171.1| putative phenylacetate-CoA ligase [Bradyrhiz... 672 0.0 ref|ZP_08630825.1| phenylacetate-coenzyme A ligase [Bradyrhizobi... 643 0.0 ref|YP_001769205.1| putative phenylacetate-CoA ligase [Methyloba... 581 e-164 ref|YP_002495641.1| putative phenylacetate-CoA ligase [Methyloba... 566 e-159 >ref|YP_001241579.1| putative phenylacetate-CoA ligase [Bradyrhizobium sp. BTAi1] gb|ABQ37673.1| putative Phenylacetate-CoA ligase [Bradyrhizobium sp. BTAi1] Length = 407 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/407 (83%), Positives = 365/407 (89%) Query: 1 MTDHYDALETRDPAEREAALFARLPEVLRKAMAAPAYANLLRGTDPASITSREALAGLPV 60 M HYDALETRDPAERE LF RLP+VL A+ APAYA LL+G DP ITSR ALA LPV Sbjct: 1 MNTHYDALETRDPAEREQDLFGRLPDVLHAAIKAPAYAALLQGIDPRDITSRTALAQLPV 60 Query: 61 LRKSELPALHRAVPPFGGFVADTPGSFARLFTSPGPIFEPEGRQADPWRGARALFAAGFR 120 LRKSELPALH+A PPFGGFVA PG+F+RLFTSPGPIFEPE DPWRGARALFAAGFR Sbjct: 61 LRKSELPALHKAAPPFGGFVAQAPGAFSRLFTSPGPIFEPEAAHTDPWRGARALFAAGFR 120 Query: 121 EGDVVLNTFSYHLTPGGFIFDASARALGCAVIPAGPGNTEQQFELIEAYRPVGYSGTPDF 180 DVVLNTFSYHLTPGGFIFDASARALGCAVIPAGPGNTE QFELIEAYRP+GYSGTPDF Sbjct: 121 SSDVVLNTFSYHLTPGGFIFDASARALGCAVIPAGPGNTEAQFELIEAYRPIGYSGTPDF 180 Query: 181 LKILLDAAATAGRDVSSIKRALVSGAAFPKSLQEEMKSRGVEAYQAFGTADLGLIAFETV 240 LKILLD AA+AGRDVSSIKRALVSGAAFP SLQ E+K+RG++AYQAFGTADLG+IA+ET Sbjct: 181 LKILLDGAASAGRDVSSIKRALVSGAAFPPSLQAEIKARGIDAYQAFGTADLGIIAYETS 240 Query: 241 AREGMTVNEDLILEIVKPGTGDPVAPGDVGEIVVTSLDPHHPWIRLALGDLTAALPGVSR 300 AREGM VNEDLI EIV+PGTGDPVA GDVGEIVV+SLDP HPWIRLALGDLTAALPGVSR Sbjct: 241 AREGMVVNEDLIFEIVRPGTGDPVAEGDVGEIVVSSLDPAHPWIRLALGDLTAALPGVSR 300 Query: 301 CGRTNMRIKGWMGRADQTTKVKGMFVRPEQIAEIGKRHPELGRLRLVVTRAGEADVMTLR 360 CGRTNMRIKGWMGRADQTTK+KGMFVRPEQIAEIGKRHPELGRLRLVVTRAGE D MTL+ Sbjct: 301 CGRTNMRIKGWMGRADQTTKIKGMFVRPEQIAEIGKRHPELGRLRLVVTRAGETDAMTLK 360 Query: 361 AECASAADALQSEVAATLRAVTKLGGTVELVGTGSLPNDGKVIADER 407 AECA+ +D LQ +A +LR+VTKLGG VELV G+LPNDGKVIADER Sbjct: 361 AECAAPSDGLQDALATSLRSVTKLGGQVELVAPGTLPNDGKVIADER 407 >ref|YP_001207171.1| putative phenylacetate-CoA ligase [Bradyrhizobium sp. ORS 278] emb|CAL78954.1| putative Phenylacetate-CoA ligase [Bradyrhizobium sp. ORS 278] Length = 407 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/407 (81%), Positives = 365/407 (89%) Query: 1 MTDHYDALETRDPAEREAALFARLPEVLRKAMAAPAYANLLRGTDPASITSREALAGLPV 60 M HYDALETRDP ER LF RLP+VLR AM APAYA LL+G +P IT+R ALA LPV Sbjct: 1 MNTHYDALETRDPTERGQDLFGRLPDVLRAAMKAPAYAALLQGINPGDITTRAALAQLPV 60 Query: 61 LRKSELPALHRAVPPFGGFVADTPGSFARLFTSPGPIFEPEGRQADPWRGARALFAAGFR 120 LRKSELPALH+A PPFGGFVA PG+F+RLFTSPGPIFEPE +DPW GARALFA+GFR Sbjct: 61 LRKSELPALHKAAPPFGGFVAQAPGAFSRLFTSPGPIFEPEAAHSDPWHGARALFASGFR 120 Query: 121 EGDVVLNTFSYHLTPGGFIFDASARALGCAVIPAGPGNTEQQFELIEAYRPVGYSGTPDF 180 GDVVLNTFSYHLTPGGFIFDASARALGCAVIPAGPGNTE QFELIEAYRP+GYSGTPDF Sbjct: 121 CGDVVLNTFSYHLTPGGFIFDASARALGCAVIPAGPGNTEAQFELIEAYRPIGYSGTPDF 180 Query: 181 LKILLDAAATAGRDVSSIKRALVSGAAFPKSLQEEMKSRGVEAYQAFGTADLGLIAFETV 240 LKILLD AA+AGRDV+S+KRALVSGAAFP SLQ E+K+RG++AYQAFGTADLG+IA+ET Sbjct: 181 LKILLDGAASAGRDVTSLKRALVSGAAFPPSLQAEIKARGIDAYQAFGTADLGIIAYETS 240 Query: 241 AREGMTVNEDLILEIVKPGTGDPVAPGDVGEIVVTSLDPHHPWIRLALGDLTAALPGVSR 300 AREGM VNEDLILEIV+PGTGDPVA GDVGEIVVTSLDPHHPWIRLALGDLTAALPG+S Sbjct: 241 AREGMVVNEDLILEIVRPGTGDPVAEGDVGEIVVTSLDPHHPWIRLALGDLTAALPGISA 300 Query: 301 CGRTNMRIKGWMGRADQTTKVKGMFVRPEQIAEIGKRHPELGRLRLVVTRAGEADVMTLR 360 CGRTNMRIKGWMGRADQTTK+KGMFVRPEQ+AEIGKRHPELGRLRLVVTRAGE D MTL+ Sbjct: 301 CGRTNMRIKGWMGRADQTTKIKGMFVRPEQVAEIGKRHPELGRLRLVVTRAGETDAMTLK 360 Query: 361 AECASAADALQSEVAATLRAVTKLGGTVELVGTGSLPNDGKVIADER 407 AE A+ +D+L + A+LR+VTKLGG+V LV G+LPNDGKVIADER Sbjct: 361 AESAAPSDSLSEALNASLRSVTKLGGSVALVAPGTLPNDGKVIADER 407 >ref|ZP_08630825.1| phenylacetate-coenzyme A ligase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06357.1| phenylacetate-coenzyme A ligase [Bradyrhizobiaceae bacterium SG-6C] Length = 410 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/407 (79%), Positives = 349/407 (85%) Query: 1 MTDHYDALETRDPAEREAALFARLPEVLRKAMAAPAYANLLRGTDPASITSREALAGLPV 60 MT HYDALETR PA REA LFARLP VL A APAYA G D ASITSR ALA LPV Sbjct: 1 MTSHYDALETRSPAAREADLFARLPGVLAAAAKAPAYAAHFNGIDLASITSRNALAKLPV 60 Query: 61 LRKSELPALHRAVPPFGGFVADTPGSFARLFTSPGPIFEPEGRQADPWRGARALFAAGFR 120 LRKS+LPALH+A PPFGGFVA GSF RLFTSPGPIFEPE + DPWRGARA+FAAGFR Sbjct: 61 LRKSDLPALHKAAPPFGGFVAAPAGSFGRLFTSPGPIFEPEAAETDPWRGARAVFAAGFR 120 Query: 121 EGDVVLNTFSYHLTPGGFIFDASARALGCAVIPAGPGNTEQQFELIEAYRPVGYSGTPDF 180 GD+VLNTFSYHLTPGGFIFD SARALGCAVIP GPGNTEQQFELIE YRPVGYSGTPDF Sbjct: 121 PGDIVLNTFSYHLTPGGFIFDTSARALGCAVIPGGPGNTEQQFELIETYRPVGYSGTPDF 180 Query: 181 LKILLDAAATAGRDVSSIKRALVSGAAFPKSLQEEMKSRGVEAYQAFGTADLGLIAFETV 240 LKILLDAA GRD SSI+RA+VSGAAFPKSLQEEMK+RGV+AYQ FGTADLG++A+ET Sbjct: 181 LKILLDAADKTGRDASSIRRAVVSGAAFPKSLQEEMKARGVDAYQNFGTADLGIVAYETA 240 Query: 241 AREGMTVNEDLILEIVKPGTGDPVAPGDVGEIVVTSLDPHHPWIRLALGDLTAALPGVSR 300 AREG+ VNE++I+EIV+PGTGDPVA GDVGEIVVT+LDPHHP +RLALGDL+A L G S Sbjct: 241 AREGLVVNENIIVEIVRPGTGDPVADGDVGEIVVTTLDPHHPVVRLALGDLSAVLAGASP 300 Query: 301 CGRTNMRIKGWMGRADQTTKVKGMFVRPEQIAEIGKRHPELGRLRLVVTRAGEADVMTLR 360 CGRTNMRIKGWMGRADQTTKVKGMFVRPEQIAEIG RHPELGRLRL+VTR E D MTL Sbjct: 301 CGRTNMRIKGWMGRADQTTKVKGMFVRPEQIAEIGNRHPELGRLRLIVTRERETDAMTLS 360 Query: 361 AECASAADALQSEVAATLRAVTKLGGTVELVGTGSLPNDGKVIADER 407 AE A+ ADAL+ VA+TLRAVTKL G V LV GSLPNDGK I+DER Sbjct: 361 AETATPADALRDAVASTLRAVTKLSGNVTLVAPGSLPNDGKAISDER 407 >ref|YP_001769205.1| putative phenylacetate-CoA ligase [Methylobacterium sp. 4-46] gb|ACA16771.1| putative phenylacetate-CoA ligase [Methylobacterium sp. 4-46] Length = 410 Score = 581 bits (1498), Expect = e-164, Method: Compositional matrix adjust. Identities = 292/407 (71%), Positives = 328/407 (80%) Query: 1 MTDHYDALETRDPAEREAALFARLPEVLRKAMAAPAYANLLRGTDPASITSREALAGLPV 60 M++HYDA ET PA R+AALFARLP L A+ +PAYA L DP S+T R ALA LPV Sbjct: 1 MSEHYDARETESPAARDAALFARLPTALAAALNSPAYAAHLGAIDPDSVTDRAALARLPV 60 Query: 61 LRKSELPALHRAVPPFGGFVADTPGSFARLFTSPGPIFEPEGRQADPWRGARALFAAGFR 120 LRK E+P + R PPFGGFV PG F RLFTSPGPIFEP+ DPW GAR LFAAGFR Sbjct: 61 LRKGEMPGMQRGAPPFGGFVPAAPGRFPRLFTSPGPIFEPQRAGEDPWGGARCLFAAGFR 120 Query: 121 EGDVVLNTFSYHLTPGGFIFDASARALGCAVIPAGPGNTEQQFELIEAYRPVGYSGTPDF 180 GDVVLNTF YHLTPGGFIFD +ARALGCAVIPAGPG TEQQ +LIEAYRPVGY GTPDF Sbjct: 121 PGDVVLNTFGYHLTPGGFIFDTAARALGCAVIPAGPGQTEQQLDLIEAYRPVGYCGTPDF 180 Query: 181 LKILLDAAATAGRDVSSIKRALVSGAAFPKSLQEEMKSRGVEAYQAFGTADLGLIAFETV 240 L+IL++A +AGRDV+S++RALVSGAAFPKSLQE + G++AYQA+ TAD+G IA+E+ Sbjct: 181 LRILVEAGRSAGRDVASLRRALVSGAAFPKSLQEIVAGFGIDAYQAYATADVGFIAYESG 240 Query: 241 AREGMTVNEDLILEIVKPGTGDPVAPGDVGEIVVTSLDPHHPWIRLALGDLTAALPGVSR 300 AR+G+ VNEDLILEIV+PGTGDPV G+VGEIVVT LDP P IR ALGDLTA+L G S Sbjct: 241 ARDGLVVNEDLILEIVRPGTGDPVPDGEVGEIVVTVLDPDRPLIRYALGDLTASLGGASA 300 Query: 301 CGRTNMRIKGWMGRADQTTKVKGMFVRPEQIAEIGKRHPELGRLRLVVTRAGEADVMTLR 360 CGRT RI+GWMGRADQ KVKGMFVRPEQ+AE+G+RHPELGRLRLVV RA E D MTLR Sbjct: 301 CGRTAPRIRGWMGRADQAAKVKGMFVRPEQVAELGRRHPELGRLRLVVARADETDAMTLR 360 Query: 361 AECASAADALQSEVAATLRAVTKLGGTVELVGTGSLPNDGKVIADER 407 AECA+ AL VA TLRAVTKL G V+LV GSLPNDGKVIADER Sbjct: 361 AECAAPGRALAEAVAETLRAVTKLRGDVDLVPPGSLPNDGKVIADER 407 >ref|YP_002495641.1| putative phenylacetate-CoA ligase [Methylobacterium nodulans ORS 2060] gb|ACL55338.1| putative phenylacetate-CoA ligase [Methylobacterium nodulans ORS 2060] Length = 410 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/407 (70%), Positives = 322/407 (79%) Query: 1 MTDHYDALETRDPAEREAALFARLPEVLRKAMAAPAYANLLRGTDPASITSREALAGLPV 60 M +HYDA ET PA R+AALFARLP++L A+ +P YA L DPA+IT R ALA LPV Sbjct: 1 MPEHYDARETESPAARDAALFARLPDILAAALRSPGYAAHLGEIDPAAITDRTALARLPV 60 Query: 61 LRKSELPALHRAVPPFGGFVADTPGSFARLFTSPGPIFEPEGRQADPWRGARALFAAGFR 120 LRKSE+P R PFGGFV PG F RLFTSPGPIFEP+ DPW GAR LFAAGFR Sbjct: 61 LRKSEMPEKQRGALPFGGFVPGEPGRFPRLFTSPGPIFEPQRSGEDPWGGARCLFAAGFR 120 Query: 121 EGDVVLNTFSYHLTPGGFIFDASARALGCAVIPAGPGNTEQQFELIEAYRPVGYSGTPDF 180 GDVVLNTF YHLTPGGFIFD +ARALGCAVIPAGPGNTEQQ +LIEAYRP GY GTPDF Sbjct: 121 PGDVVLNTFGYHLTPGGFIFDTAARALGCAVIPAGPGNTEQQLDLIEAYRPTGYCGTPDF 180 Query: 181 LKILLDAAATAGRDVSSIKRALVSGAAFPKSLQEEMKSRGVEAYQAFGTADLGLIAFETV 240 L+IL++A AGR++SS++R++VSGAAFPKSLQE + G+ AYQA+ TAD+G IA+ET Sbjct: 181 LRILVEAGRAAGRNISSLRRSVVSGAAFPKSLQEIVAGFGIAAYQAYATADVGFIAYETS 240 Query: 241 AREGMTVNEDLILEIVKPGTGDPVAPGDVGEIVVTSLDPHHPWIRLALGDLTAALPGVSR 300 AR+G+ VNEDLILEIV+PGTGDPV G+VGEIVVT LDP P IR ALGDLTAAL S Sbjct: 241 ARDGLVVNEDLILEIVRPGTGDPVPEGEVGEIVVTVLDPDRPLIRYALGDLTAALGHASS 300 Query: 301 CGRTNMRIKGWMGRADQTTKVKGMFVRPEQIAEIGKRHPELGRLRLVVTRAGEADVMTLR 360 CGRT RI+GWMGRADQ KVKGMFVRPEQ+AE+ +RHPEL RLRLVVTRA E D MTL+ Sbjct: 301 CGRTAPRIRGWMGRADQAAKVKGMFVRPEQVAELARRHPELKRLRLVVTRADETDAMTLK 360 Query: 361 AECASAADALQSEVAATLRAVTKLGGTVELVGTGSLPNDGKVIADER 407 AE A AL VA +L+AVTKL G VELV GSLPNDGKVIADER Sbjct: 361 AETAEPGRALADAVAESLQAVTKLRGAVELVAPGSLPNDGKVIADER 407