BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0023.p (566 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_484202.1| AMP-binding domain protein [Rhodopseudomonas pa... 1019 0.0 ref|YP_567393.1| AMP-binding domain-containing protein [Rhodopse... 1011 0.0 ref|YP_001989498.1| AMP-binding domain-containing protein [Rhodo... 1006 0.0 ref|YP_004106539.1| AMP-dependent synthetase and ligase [Rhodops... 994 0.0 ref|YP_001769213.1| AMP-binding domain-containing protein [Methy... 853 0.0 >ref|YP_484202.1| AMP-binding domain protein [Rhodopseudomonas palustris HaA2] gb|ABD05291.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] Length = 576 Score = 1019 bits (2635), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/561 (85%), Positives = 512/561 (91%) Query: 6 KADSYVCGISDVPLLGETIGRSLDHARARWGEREALVSPSHHVRWTWNEFADRVEALAAG 65 KA SYVCG+SD PLLG TIG++LD A RW +REALVSPSH VRW+W EFA RV+ALAAG Sbjct: 16 KAPSYVCGVSDAPLLGITIGQALDLAAQRWPDREALVSPSHDVRWSWREFAQRVDALAAG 75 Query: 66 LLALGLQRGERIGIWSLNRPEWTLTQFAAAKAGLILVTINPAYRLSELEFALGKVGCAAI 125 LALGL+RG RIG+WS+NRPEWTLTQFAAAKAG+ILVTINPAYRLSELEFAL KVGCAA+ Sbjct: 76 FLALGLERGARIGVWSMNRPEWTLTQFAAAKAGMILVTINPAYRLSELEFALAKVGCAAL 135 Query: 126 VTATAFKTSAYMEMLNTLLPELASSEPGHLRSARLPQLRAVIQIGGPAAPGTIPFDTVSQ 185 VTATAFKTSAYMEMLNTL+PELA S+PG L+SARLPQLRAVIQIGGP PGT+ FD V+ Sbjct: 136 VTATAFKTSAYMEMLNTLIPELAKSQPGALQSARLPQLRAVIQIGGPKCPGTLAFDEVAT 195 Query: 186 MGGDRHREQLAALGESLQFDDPVNIQFTSGTTGSPKGVTLTHHNILNNGYFTGRAMRLTE 245 MGGDRHR+ +A L LQFDD VNIQFTSGTTGSPKGVTLTHHNILNNGYF GRAM+LTE Sbjct: 196 MGGDRHRQAIAQLAAELQFDDAVNIQFTSGTTGSPKGVTLTHHNILNNGYFVGRAMKLTE 255 Query: 246 QDSICIPVPLYHCFGMVMGNLASVTLGTTMVYPGEGFDPLATLTTVAQEKCTTLYGVPTM 305 QD ICIPVPLYHCFGMVMGNLASVT G MVYPGEGFDPLATL T + EKCT LYGVPTM Sbjct: 256 QDRICIPVPLYHCFGMVMGNLASVTCGAAMVYPGEGFDPLATLQTASSEKCTALYGVPTM 315 Query: 306 FIAELDHPDFARFDLSSLRTGIMAGAPCPIEVMKRVNTEMNMREVTIAYGMTETSPVSFQ 365 FIAELDHPDFA FDLSSLRTGIMAGAPCP+EVM+RVN +MNMREVTIAYGMTETSPVSFQ Sbjct: 316 FIAELDHPDFASFDLSSLRTGIMAGAPCPVEVMRRVNDQMNMREVTIAYGMTETSPVSFQ 375 Query: 366 SATDDPLERRVSTVGRIHPHVEVKVVDLDGRVVPRGERGELCTRGYSIMLGYWDEKEKTG 425 SA DDP ERRVSTVGRIHPHVEVKVVDL+GR+VPRG RGELCTRGYSIMLGYWDE EKT Sbjct: 376 SAVDDPEERRVSTVGRIHPHVEVKVVDLEGRIVPRGVRGELCTRGYSIMLGYWDEAEKTA 435 Query: 426 DVLDTNGWMHTGDLAVIDDEGYCNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDVQI 485 DVLD GWMHTGDLAVIDDEG+CNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDVQI Sbjct: 436 DVLDAAGWMHTGDLAVIDDEGFCNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDVQI 495 Query: 486 FGVADERYGEELCAWVRIRQGETLTADEVRAFCQGQIAHNKIPRYVEFVDEFPMTVTGKI 545 FGVAD RYGEELCAWVR+R GETLTAD++R FCQGQIAHNKIPRYVEFVDEFPMTVTGKI Sbjct: 496 FGVADSRYGEELCAWVRVRPGETLTADDIRGFCQGQIAHNKIPRYVEFVDEFPMTVTGKI 555 Query: 546 QKFVMRDAVEQRLGLKAAKTA 566 QKFVMR+ VE +LGLKAAKTA Sbjct: 556 QKFVMREKVEAKLGLKAAKTA 576 >ref|YP_567393.1| AMP-binding domain-containing protein [Rhodopseudomonas palustris BisB5] gb|ABE37492.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisB5] Length = 564 Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/563 (84%), Positives = 513/563 (91%) Query: 4 TSKADSYVCGISDVPLLGETIGRSLDHARARWGEREALVSPSHHVRWTWNEFADRVEALA 63 T KA SYVCG+SD PLLG TIG++LD A RW +REALVSPSH RWTW EFA V+ALA Sbjct: 2 TDKAPSYVCGVSDAPLLGITIGQALDLAAQRWPDREALVSPSHDTRWTWREFAACVDALA 61 Query: 64 AGLLALGLQRGERIGIWSLNRPEWTLTQFAAAKAGLILVTINPAYRLSELEFALGKVGCA 123 AG LALGL+RG RIGIWS+NRPEWTLTQFAAAKAGLILVTINPAYRLSELEFAL KVGCA Sbjct: 62 AGFLALGLERGARIGIWSMNRPEWTLTQFAAAKAGLILVTINPAYRLSELEFALAKVGCA 121 Query: 124 AIVTATAFKTSAYMEMLNTLLPELASSEPGHLRSARLPQLRAVIQIGGPAAPGTIPFDTV 183 A+VTATAFKTSAYMEMLNTL+PEL+ S+PG L+S++LP LRAVIQIGGP PGT+ FD + Sbjct: 122 ALVTATAFKTSAYMEMLNTLIPELSQSQPGALQSSKLPHLRAVIQIGGPKCPGTVAFDDL 181 Query: 184 SQMGGDRHREQLAALGESLQFDDPVNIQFTSGTTGSPKGVTLTHHNILNNGYFTGRAMRL 243 +QMGG RHRE LAAL LQFDD VNIQFTSGTTGSPKGVTLTHHNILNNGYF GRAM+L Sbjct: 182 AQMGGARHREALAALAGRLQFDDAVNIQFTSGTTGSPKGVTLTHHNILNNGYFVGRAMKL 241 Query: 244 TEQDSICIPVPLYHCFGMVMGNLASVTLGTTMVYPGEGFDPLATLTTVAQEKCTTLYGVP 303 TEQD ICIPVPLYHCFGMVMGNLA+VT G TMVYPGEGFDPLATL T ++EKCT LYGVP Sbjct: 242 TEQDRICIPVPLYHCFGMVMGNLAAVTSGATMVYPGEGFDPLATLQTASREKCTALYGVP 301 Query: 304 TMFIAELDHPDFARFDLSSLRTGIMAGAPCPIEVMKRVNTEMNMREVTIAYGMTETSPVS 363 TMFIAELDHP+FA FDLSSLRTGIMAGAPCP+EVM+RVN +MNMREVTIAYGMTETSPVS Sbjct: 302 TMFIAELDHPEFASFDLSSLRTGIMAGAPCPVEVMRRVNDQMNMREVTIAYGMTETSPVS 361 Query: 364 FQSATDDPLERRVSTVGRIHPHVEVKVVDLDGRVVPRGERGELCTRGYSIMLGYWDEKEK 423 FQSA DDP +RRVSTVGRIHPHVEVKVVDL+GR+VPRG+RGELCTRGYSIMLGYWDE EK Sbjct: 362 FQSAVDDPEQRRVSTVGRIHPHVEVKVVDLEGRIVPRGQRGELCTRGYSIMLGYWDEAEK 421 Query: 424 TGDVLDTNGWMHTGDLAVIDDEGYCNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDV 483 T DVLD GWMHTGDLAVIDDEG+CNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDV Sbjct: 422 TADVLDRTGWMHTGDLAVIDDEGFCNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDV 481 Query: 484 QIFGVADERYGEELCAWVRIRQGETLTADEVRAFCQGQIAHNKIPRYVEFVDEFPMTVTG 543 QIFGVAD RYGEELCAWVR+R GE LTAD++RAFCQGQIAHNKIPRY+EFVDEFPMTVTG Sbjct: 482 QIFGVADNRYGEELCAWVRVRSGEKLTADDIRAFCQGQIAHNKIPRYIEFVDEFPMTVTG 541 Query: 544 KIQKFVMRDAVEQRLGLKAAKTA 566 KIQKFVMR+ VE +LGL AAKTA Sbjct: 542 KIQKFVMREKVESKLGLVAAKTA 564 >ref|YP_001989498.1| AMP-binding domain-containing protein [Rhodopseudomonas palustris TIE-1] gb|ACE99022.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris TIE-1] Length = 564 Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/563 (84%), Positives = 509/563 (90%) Query: 4 TSKADSYVCGISDVPLLGETIGRSLDHARARWGEREALVSPSHHVRWTWNEFADRVEALA 63 TS SYVCG+SD PLLG TIG++LD A A W +REALVSPSH RWTW +FA RV+ALA Sbjct: 2 TSSTPSYVCGVSDAPLLGITIGQALDRAVALWPDREALVSPSHDTRWTWRDFAARVDALA 61 Query: 64 AGLLALGLQRGERIGIWSLNRPEWTLTQFAAAKAGLILVTINPAYRLSELEFALGKVGCA 123 AG LALGL+RG RIGIWS+NRPEWTLTQFAAAKAGLILVTINPAYRLSELEFAL KVGCA Sbjct: 62 AGFLALGLERGARIGIWSMNRPEWTLTQFAAAKAGLILVTINPAYRLSELEFALAKVGCA 121 Query: 124 AIVTATAFKTSAYMEMLNTLLPELASSEPGHLRSARLPQLRAVIQIGGPAAPGTIPFDTV 183 A+VTATAFKTS YMEMLNTL+PELA+S PG L+SA+LP+LR VIQIGGP APGTI FD V Sbjct: 122 ALVTATAFKTSHYMEMLNTLIPELATSPPGALQSAKLPKLRTVIQIGGPKAPGTIAFDEV 181 Query: 184 SQMGGDRHREQLAALGESLQFDDPVNIQFTSGTTGSPKGVTLTHHNILNNGYFTGRAMRL 243 + MGG RHR+Q+AA LQFDD VNIQFTSGTTGSPKGVTLTHHNILNNGYF GRAM+L Sbjct: 182 AAMGGARHRDQIAAFASELQFDDAVNIQFTSGTTGSPKGVTLTHHNILNNGYFVGRAMKL 241 Query: 244 TEQDSICIPVPLYHCFGMVMGNLASVTLGTTMVYPGEGFDPLATLTTVAQEKCTTLYGVP 303 TE D ICIPVPLYHCFGMVMGNLASVT G MVYPGEGFDPL TL T ++EKCT LYGVP Sbjct: 242 TEADRICIPVPLYHCFGMVMGNLASVTSGAAMVYPGEGFDPLVTLQTASREKCTALYGVP 301 Query: 304 TMFIAELDHPDFARFDLSSLRTGIMAGAPCPIEVMKRVNTEMNMREVTIAYGMTETSPVS 363 TMFIAELDHP+FA FDLSSLRTGIMAGAPCP+EVM+RVN MNMREVTIAYGMTETSPVS Sbjct: 302 TMFIAELDHPEFASFDLSSLRTGIMAGAPCPVEVMRRVNDAMNMREVTIAYGMTETSPVS 361 Query: 364 FQSATDDPLERRVSTVGRIHPHVEVKVVDLDGRVVPRGERGELCTRGYSIMLGYWDEKEK 423 FQSA DDP ERRVSTVGRIHPHVEVKVVDLDG++VPRG+RGELCTRGYS+MLGYWDE EK Sbjct: 362 FQSAVDDPEERRVSTVGRIHPHVEVKVVDLDGKIVPRGQRGELCTRGYSVMLGYWDEAEK 421 Query: 424 TGDVLDTNGWMHTGDLAVIDDEGYCNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDV 483 T DVLD GWMHTGDLA IDDEG+CNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDV Sbjct: 422 TADVLDAAGWMHTGDLATIDDEGFCNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDV 481 Query: 484 QIFGVADERYGEELCAWVRIRQGETLTADEVRAFCQGQIAHNKIPRYVEFVDEFPMTVTG 543 QIFGVAD+RYGEELCAWVR R GETLTAD+VRAFCQGQIAHNKIPRY+EFVDEFPMTVTG Sbjct: 482 QIFGVADDRYGEELCAWVRPRPGETLTADDVRAFCQGQIAHNKIPRYIEFVDEFPMTVTG 541 Query: 544 KIQKFVMRDAVEQRLGLKAAKTA 566 KIQKF+MR+ VE +LGLKAAKTA Sbjct: 542 KIQKFIMREKVESKLGLKAAKTA 564 >ref|YP_004106539.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] gb|ADU41806.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] Length = 564 Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/563 (83%), Positives = 505/563 (89%) Query: 4 TSKADSYVCGISDVPLLGETIGRSLDHARARWGEREALVSPSHHVRWTWNEFADRVEALA 63 T SYVCG+SD PLLG TIG++LD A W +REALVSPSH RWTW EFA RV+ALA Sbjct: 2 TPATPSYVCGVSDAPLLGITIGQALDRAATLWPDREALVSPSHDTRWTWREFAARVDALA 61 Query: 64 AGLLALGLQRGERIGIWSLNRPEWTLTQFAAAKAGLILVTINPAYRLSELEFALGKVGCA 123 AG +ALGL+RG RIGIWS+NRPEWTLTQFAAAKAGLILVTINPAYRLSELEFAL KVGCA Sbjct: 62 AGFVALGLERGARIGIWSMNRPEWTLTQFAAAKAGLILVTINPAYRLSELEFALAKVGCA 121 Query: 124 AIVTATAFKTSAYMEMLNTLLPELASSEPGHLRSARLPQLRAVIQIGGPAAPGTIPFDTV 183 A+VTATAFKTS YMEMLNTL+PELA+S PG L+SA+LP+LR VIQIGGP PGTI FD V Sbjct: 122 ALVTATAFKTSHYMEMLNTLIPELATSSPGALQSAKLPKLRTVIQIGGPKCPGTIAFDEV 181 Query: 184 SQMGGDRHREQLAALGESLQFDDPVNIQFTSGTTGSPKGVTLTHHNILNNGYFTGRAMRL 243 + MGG RHR+Q+AA LQFDD VNIQFTSGTTGSPKGVTLTHHNILNNGYF GRAM+L Sbjct: 182 ATMGGARHRDQIAAFASELQFDDAVNIQFTSGTTGSPKGVTLTHHNILNNGYFVGRAMKL 241 Query: 244 TEQDSICIPVPLYHCFGMVMGNLASVTLGTTMVYPGEGFDPLATLTTVAQEKCTTLYGVP 303 TE D ICIPVPLYHCFGMVMGNLASVT G MVYPGEGFDPL TL T ++EKCT LYGVP Sbjct: 242 TEVDRICIPVPLYHCFGMVMGNLASVTCGAAMVYPGEGFDPLVTLQTASREKCTALYGVP 301 Query: 304 TMFIAELDHPDFARFDLSSLRTGIMAGAPCPIEVMKRVNTEMNMREVTIAYGMTETSPVS 363 TMFIAELDHP+FA FDLSSLRTGIMAGAPCP+EVM+RVN MNMREVTIAYGMTETSPVS Sbjct: 302 TMFIAELDHPEFAGFDLSSLRTGIMAGAPCPVEVMRRVNDAMNMREVTIAYGMTETSPVS 361 Query: 364 FQSATDDPLERRVSTVGRIHPHVEVKVVDLDGRVVPRGERGELCTRGYSIMLGYWDEKEK 423 FQSA DDP +RRVSTVGRIHPHVEVKVVDLDG++VPRG RGELCTRGYS+MLGYWDE EK Sbjct: 362 FQSAVDDPEDRRVSTVGRIHPHVEVKVVDLDGKIVPRGTRGELCTRGYSVMLGYWDEPEK 421 Query: 424 TGDVLDTNGWMHTGDLAVIDDEGYCNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDV 483 T DVLD GWMHTGDLA IDDEG+CNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDV Sbjct: 422 TADVLDAAGWMHTGDLATIDDEGFCNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDV 481 Query: 484 QIFGVADERYGEELCAWVRIRQGETLTADEVRAFCQGQIAHNKIPRYVEFVDEFPMTVTG 543 QIFGVAD+RYGEELCAWVR R GE+LTAD+VRAFCQGQIAHNKIPRY+EFVDEFPMTVTG Sbjct: 482 QIFGVADDRYGEELCAWVRPRPGESLTADDVRAFCQGQIAHNKIPRYIEFVDEFPMTVTG 541 Query: 544 KIQKFVMRDAVEQRLGLKAAKTA 566 KIQKF+MR+ VE +LGLKAAKTA Sbjct: 542 KIQKFIMREKVEAKLGLKAAKTA 564 >ref|YP_001769213.1| AMP-binding domain-containing protein [Methylobacterium sp. 4-46] gb|ACA16779.1| AMP-dependent synthetase and ligase [Methylobacterium sp. 4-46] Length = 565 Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/558 (73%), Positives = 469/558 (84%) Query: 9 SYVCGISDVPLLGETIGRSLDHARARWGEREALVSPSHHVRWTWNEFADRVEALAAGLLA 68 SYV G SDVPLLG TIG +L A ARW +R AL++P+ +RW+W E R EA AAGLLA Sbjct: 8 SYVHGASDVPLLGLTIGEALREAAARWPDRAALIAPAAGLRWSWAELNARAEAFAAGLLA 67 Query: 69 LGLQRGERIGIWSLNRPEWTLTQFAAAKAGLILVTINPAYRLSELEFALGKVGCAAIVTA 128 LGL+RG+RIGIWSLN EW LTQFAAAKAGLILVT+NPAYRL+ELEFAL KVGC A+VTA Sbjct: 68 LGLERGDRIGIWSLNNAEWALTQFAAAKAGLILVTVNPAYRLAELEFALNKVGCKALVTA 127 Query: 129 TAFKTSAYMEMLNTLLPELASSEPGHLRSARLPQLRAVIQIGGPAAPGTIPFDTVSQMGG 188 AFKTS Y+ ML TL PEL +EPG LR+ARLPQLR VI+IGG + PGT+ F+ V++ G Sbjct: 128 RAFKTSDYLGMLTTLAPELREAEPGRLRAARLPQLRVVIEIGGNSLPGTLAFEAVAERAG 187 Query: 189 DRHREQLAALGESLQFDDPVNIQFTSGTTGSPKGVTLTHHNILNNGYFTGRAMRLTEQDS 248 R ++AA +LQFDDPVNIQFTSGTTGSPKGVTL+HHNILNNG F GRAMRL +D Sbjct: 188 AAERARVAANRAALQFDDPVNIQFTSGTTGSPKGVTLSHHNILNNGSFVGRAMRLGPEDR 247 Query: 249 ICIPVPLYHCFGMVMGNLASVTLGTTMVYPGEGFDPLATLTTVAQEKCTTLYGVPTMFIA 308 ICIPVPLYHCFGMVMGNLA+VT G MVYPGEGFDPLATL V E+CT LYGVPTMF+A Sbjct: 248 ICIPVPLYHCFGMVMGNLAAVTSGAAMVYPGEGFDPLATLRAVEAERCTALYGVPTMFLA 307 Query: 309 ELDHPDFARFDLSSLRTGIMAGAPCPIEVMKRVNTEMNMREVTIAYGMTETSPVSFQSAT 368 +LDH +FARFDLSSLRTGIMAG+PCPI VM+R M++RE+TI YGMTETSPVSFQSA Sbjct: 308 QLDHLEFARFDLSSLRTGIMAGSPCPIAVMQRAVDRMHLRELTICYGMTETSPVSFQSAV 367 Query: 369 DDPLERRVSTVGRIHPHVEVKVVDLDGRVVPRGERGELCTRGYSIMLGYWDEKEKTGDVL 428 DDPLERRVSTVGRIHPH EVK+VD +GR+VPRG GELCTRGYS+M GYWD+ EKT +V Sbjct: 368 DDPLERRVSTVGRIHPHTEVKIVDAEGRIVPRGTPGELCTRGYSVMRGYWDDPEKTAEVR 427 Query: 429 DTNGWMHTGDLAVIDDEGYCNIVGRIKDMVIRGGENLYPREIEEFLYRHPKIQDVQIFGV 488 D GWMHTGDLA +DD+G+CNIVGRIKD+VIRGGEN+YPRE+EEFLYRHP IQ+VQ+FGV Sbjct: 428 DAAGWMHTGDLATLDDQGFCNIVGRIKDLVIRGGENVYPREVEEFLYRHPAIQEVQVFGV 487 Query: 489 ADERYGEELCAWVRIRQGETLTADEVRAFCQGQIAHNKIPRYVEFVDEFPMTVTGKIQKF 548 D RYGEELCAWV++R G TLTA+E+RA C GQIAH KIPRYVEFVD FPMTVTGK+QK+ Sbjct: 488 PDPRYGEELCAWVKLRPGATLTAEELRAHCGGQIAHQKIPRYVEFVDAFPMTVTGKMQKY 547 Query: 549 VMRDAVEQRLGLKAAKTA 566 +MR+A+ +RLGL +TA Sbjct: 548 LMREAMIERLGLAVERTA 565