BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0002.p (379 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202233.1| hypothetical protein BRADO0010 [Bradyrhizobi... 481 e-134 ref|YP_575367.1| hypothetical protein Nham_0005 [Nitrobacter ham... 443 e-122 ref|NP_767457.1| hypothetical protein blr0817 [Bradyrhizobium ja... 443 e-122 ref|YP_001236226.1| hypothetical protein BBta_0015 [Bradyrhizobi... 432 e-119 ref|YP_779178.1| hypothetical protein RPE_0239 [Rhodopseudomonas... 353 3e-95 >ref|YP_001202233.1| hypothetical protein BRADO0010 [Bradyrhizobium sp. ORS 278] emb|CAL73983.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 380 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 250/373 (67%), Positives = 292/373 (78%), Gaps = 2/373 (0%) Query: 6 KRMFDQLWARKTQLALAVRIASAGVAAYTIALALNLMLPLWAVLTSLIVTQMSVGRSLKA 65 K +F ++ ARK Q++LAVR A A+ IA A L LPLWAVLTSLIVTQ SVGRSLKA Sbjct: 5 KELFGRVRARKAQMSLAVRGTVAATLAFAIATAFQLKLPLWAVLTSLIVTQGSVGRSLKA 64 Query: 66 SRDYMLGTIGGAVYGGAIAVLIPHSGEGSLLALLVLAIVPLAFIAALNPSLNSATVTAVI 125 +RDYM GTIGGA+YGGAI V IPHSGE LL +L+LA+ PLAFIAA+NPSLN+ATVTAVI Sbjct: 65 TRDYMFGTIGGAIYGGAITVFIPHSGELQLLGMLILAVTPLAFIAAVNPSLNAATVTAVI 124 Query: 126 VLLLPTMHHSNPLDSAIDRVLEVTVGALTGLLISFLVLPSRAVSQIRVNASNLLELLSAA 185 VLL+PTM H +PL SAIDRV EV VGALTGL +SF+VLPSRA +Q+R A LLEL++AA Sbjct: 125 VLLVPTMGHLDPLGSAIDRVFEVAVGALTGLAVSFVVLPSRAHAQMRSAAGRLLELIAAA 184 Query: 186 FAELLAGLTRGLDNDALHRIQDGIGTAVTNLHATGLEAERERSMHLSSGPDTGPLLRTIQ 245 F ELLAGL+ G DNDALHRIQDGIG A+T L+ATG EAERERS LSSG DTGP+LRTI Sbjct: 185 FTELLAGLSHGRDNDALHRIQDGIGAALTELNATGAEAERERSARLSSGADTGPMLRTIL 244 Query: 246 RLRHDVVMIGRACVVPLPADIQARLARPLADVSKAIVTYMVAVATALRAGSGPADMAPVD 305 RLRHDVVMIGRA VVPLP+++QARL+ P+ VS AI Y+ A A+R GSGP + PV Sbjct: 245 RLRHDVVMIGRASVVPLPSELQARLSGPVTRVSDAIAGYLRGCAGAIRNGSGPPAIWPVH 304 Query: 306 AALHAYSEEVAAVRTDGLIRGLPVDAAERFYALGFSLDQMRQNLNDLKRCHGNWCTNADA 365 A+ AY+E VAAVR+DGL RGLP DAAERF+ALGFSLDQMRQNL DL+R W + Sbjct: 305 VAVKAYAEAVAAVRSDGLTRGLPGDAAERFFALGFSLDQMRQNLIDLERVVAEWA--GAS 362 Query: 366 SEKIVADTPEKSA 378 S K PE+++ Sbjct: 363 SGKPHRPEPEETS 375 >ref|YP_575367.1| hypothetical protein Nham_0005 [Nitrobacter hamburgensis X14] gb|ABE60907.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 377 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 240/366 (65%), Positives = 292/366 (79%) Query: 1 MRTFAKRMFDQLWARKTQLALAVRIASAGVAAYTIALALNLMLPLWAVLTSLIVTQMSVG 60 M ++ KR QLW+RK +L L VR+ +A AA +A+AL+L LPLWAVLT++IVTQMSVG Sbjct: 1 MISYLKRTATQLWSRKVELGLGVRVTAAAFAALVVAIALHLRLPLWAVLTAIIVTQMSVG 60 Query: 61 RSLKASRDYMLGTIGGAVYGGAIAVLIPHSGEGSLLALLVLAIVPLAFIAALNPSLNSAT 120 RSLKA+RDY++GTIGGA+YGGAIA+LIPHSGE LLA+LVLA+ PLAF+AA+NPSLN AT Sbjct: 61 RSLKATRDYLIGTIGGALYGGAIAILIPHSGESGLLAVLVLAVAPLAFLAAINPSLNVAT 120 Query: 121 VTAVIVLLLPTMHHSNPLDSAIDRVLEVTVGALTGLLISFLVLPSRAVSQIRVNASNLLE 180 VTA+IVLLLPTM +PL+SAIDR+LEVTVGA+TG+L+SFLVLPSRA QIRVNA+ +L Sbjct: 121 VTAIIVLLLPTMGQMSPLESAIDRILEVTVGAITGMLVSFLVLPSRAYGQIRVNAARVLN 180 Query: 181 LLSAAFAELLAGLTRGLDNDALHRIQDGIGTAVTNLHATGLEAERERSMHLSSGPDTGPL 240 LL+ A ELLAGLTRG DNDALH +QDGIG A++ L+A G+EAERERS LS GPDTGPL Sbjct: 181 LLADALQELLAGLTRGRDNDALHALQDGIGHAISELNAIGIEAERERSARLSHGPDTGPL 240 Query: 241 LRTIQRLRHDVVMIGRACVVPLPADIQARLARPLADVSKAIVTYMVAVATALRAGSGPAD 300 LRT+ RLRHDVVMIGRA V PLP ++Q RLA+PLA +S + Y+ A A ALR G+ Sbjct: 241 LRTVLRLRHDVVMIGRATVTPLPINLQLRLAQPLARLSDTMNNYLKASAEALRLGAPAPA 300 Query: 301 MAPVDAALHAYSEEVAAVRTDGLIRGLPVDAAERFYALGFSLDQMRQNLNDLKRCHGNWC 360 + PV AL AY+ E+AA+R +GL RGLP D ERF+ALGFSL+QMRQNL DL+R W Sbjct: 301 LLPVQTALEAYAAEIAAMRREGLTRGLPGDMTERFFALGFSLEQMRQNLGDLERYIREWT 360 Query: 361 TNADAS 366 +S Sbjct: 361 DRPKSS 366 >ref|NP_767457.1| hypothetical protein blr0817 [Bradyrhizobium japonicum USDA 110] dbj|BAC46082.1| blr0817 [Bradyrhizobium japonicum USDA 110] Length = 371 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 256/369 (69%), Positives = 303/369 (82%) Query: 4 FAKRMFDQLWARKTQLALAVRIASAGVAAYTIALALNLMLPLWAVLTSLIVTQMSVGRSL 63 A++MFD++ +R+TQL LA+R+ A VAAY IA AL+L+LPLWAVLTSLIVTQMSVGRSL Sbjct: 3 LARQMFDRIRSRRTQLGLAIRVTVAAVAAYAIATALHLLLPLWAVLTSLIVTQMSVGRSL 62 Query: 64 KASRDYMLGTIGGAVYGGAIAVLIPHSGEGSLLALLVLAIVPLAFIAALNPSLNSATVTA 123 KA+RDY+LGTIGGA+YGGAIA+LIP+S E LLALLVLA+ PLAF+AA+NPSLN+ATVTA Sbjct: 63 KATRDYVLGTIGGAIYGGAIAILIPYSTEAGLLALLVLAVAPLAFVAAINPSLNAATVTA 122 Query: 124 VIVLLLPTMHHSNPLDSAIDRVLEVTVGALTGLLISFLVLPSRAVSQIRVNASNLLELLS 183 +IVLL+PTMHHS+P+ SAIDRV EV VGA+TGLL+SFLVLPSRAV QIR +A+ LLEL++ Sbjct: 123 IIVLLVPTMHHSDPMTSAIDRVSEVGVGAITGLLVSFLVLPSRAVRQIRASAARLLELIA 182 Query: 184 AAFAELLAGLTRGLDNDALHRIQDGIGTAVTNLHATGLEAERERSMHLSSGPDTGPLLRT 243 AF ELLAGLTRG DNDALHRIQDGIGTA+ ++A G EAERER+ LSSGPDTGPLLRT Sbjct: 183 DAFTELLAGLTRGRDNDALHRIQDGIGTAMVGMNAIGAEAERERAARLSSGPDTGPLLRT 242 Query: 244 IQRLRHDVVMIGRACVVPLPADIQARLARPLADVSKAIVTYMVAVATALRAGSGPADMAP 303 + RLRHDVVMIGRA VVPLP ++Q RLA PLA+VS AIV ++ + A ALRAG+G + P Sbjct: 243 VLRLRHDVVMIGRATVVPLPVEVQMRLAAPLAEVSAAIVRFLRSAAEALRAGAGAPPIHP 302 Query: 304 VDAALHAYSEEVAAVRTDGLIRGLPVDAAERFYALGFSLDQMRQNLNDLKRCHGNWCTNA 363 V AL Y+E VAAVR DGLIRG D AERF+A+GFSL+QM QNL DL R G W A Sbjct: 303 VHVALQHYAEAVAAVRQDGLIRGHSGDTAERFFAIGFSLEQMHQNLCDLDRVVGEWSEAA 362 Query: 364 DASEKIVAD 372 VA+ Sbjct: 363 SDKPARVAE 371 >ref|YP_001236226.1| hypothetical protein BBta_0015 [Bradyrhizobium sp. BTAi1] gb|ABQ32320.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 380 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 248/360 (68%), Positives = 286/360 (79%), Gaps = 1/360 (0%) Query: 1 MRTFAKRMFDQLWARKTQLALAVRIASAGVAAYTIALALNLMLPLWAVLTSLIVTQMSVG 60 M +F K +F ++ ARK ++LAVR A A+ IA A L LPLWAVLTSLIVTQ SVG Sbjct: 1 MASF-KELFGRVRARKAPMSLAVRGTVAATLAFAIATAFQLKLPLWAVLTSLIVTQGSVG 59 Query: 61 RSLKASRDYMLGTIGGAVYGGAIAVLIPHSGEGSLLALLVLAIVPLAFIAALNPSLNSAT 120 RSLKA+RDYM GTIGGA+YGGAI V IPHSGE LL +L+LA+ PLAFIAA+NPSLN+AT Sbjct: 60 RSLKATRDYMFGTIGGAIYGGAITVFIPHSGELQLLGMLILAVTPLAFIAAINPSLNAAT 119 Query: 121 VTAVIVLLLPTMHHSNPLDSAIDRVLEVTVGALTGLLISFLVLPSRAVSQIRVNASNLLE 180 VTAVIVLL+PTM H +PL SAIDRV EV VGALTGL +SF+VLPSRA Q+R A LLE Sbjct: 120 VTAVIVLLVPTMGHLDPLGSAIDRVFEVAVGALTGLAVSFIVLPSRAHVQMRSAAGRLLE 179 Query: 181 LLSAAFAELLAGLTRGLDNDALHRIQDGIGTAVTNLHATGLEAERERSMHLSSGPDTGPL 240 L++AA AELLAGL+RG DNDALH IQDGIG A+T L+ATG EAERER+ LSSG DTGPL Sbjct: 180 LIAAALAELLAGLSRGRDNDALHLIQDGIGAALTELNATGAEAERERAARLSSGADTGPL 239 Query: 241 LRTIQRLRHDVVMIGRACVVPLPADIQARLARPLADVSKAIVTYMVAVATALRAGSGPAD 300 LRTI RLRHDVVMIGRA VVPLP+++QARL+ P+ VS AI +Y+ A A+R GSGP Sbjct: 240 LRTILRLRHDVVMIGRASVVPLPSELQARLSGPVTRVSDAIASYLRGCAGAIRNGSGPPA 299 Query: 301 MAPVDAALHAYSEEVAAVRTDGLIRGLPVDAAERFYALGFSLDQMRQNLNDLKRCHGNWC 360 + PV AL AY+E VAAVR+DGL RGLP DAAERF+ALGFSLDQMRQNL DL+R W Sbjct: 300 IWPVHVALKAYAEAVAAVRSDGLTRGLPGDAAERFFALGFSLDQMRQNLIDLERVVAEWA 359 >ref|YP_779178.1| hypothetical protein RPE_0239 [Rhodopseudomonas palustris BisA53] gb|ABJ04198.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 390 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 198/352 (56%), Positives = 244/352 (69%) Query: 1 MRTFAKRMFDQLWARKTQLALAVRIASAGVAAYTIALALNLMLPLWAVLTSLIVTQMSVG 60 M F + +L R+ QL LA+R+ + A A AL+L LPLWAVLT++IVTQ+SVG Sbjct: 22 MDNFRTEVLSRLKPRRPQLGLALRMTLGALLALGFAQALHLHLPLWAVLTAIIVTQLSVG 81 Query: 61 RSLKASRDYMLGTIGGAVYGGAIAVLIPHSGEGSLLALLVLAIVPLAFIAALNPSLNSAT 120 RSLK + DY +GTIGG +YGG IA+ +PHS E L+A+L L + PLA +AAL P N AT Sbjct: 82 RSLKTALDYFIGTIGGVIYGGVIAIFVPHSTEAELIAVLALVVAPLALLAALKPQFNVAT 141 Query: 121 VTAVIVLLLPTMHHSNPLDSAIDRVLEVTVGALTGLLISFLVLPSRAVSQIRVNASNLLE 180 VT +IVLL+PTM PL SAIDRV EV VGALTGL +SFLVLPSRA+ +A+ LE Sbjct: 142 VTGIIVLLVPTMTQVAPLASAIDRVFEVGVGALTGLAVSFLVLPSRALGMATTSAALTLE 201 Query: 181 LLSAAFAELLAGLTRGLDNDALHRIQDGIGTAVTNLHATGLEAERERSMHLSSGPDTGPL 240 L++A+ ELLAGLTRGLDN+ALHR+QDGIG ++ L EAE ER+ L +GPDT PL Sbjct: 202 LMAASLRELLAGLTRGLDNEALHRLQDGIGHSLVKLGEIAGEAESERAAGLRTGPDTAPL 261 Query: 241 LRTIQRLRHDVVMIGRACVVPLPADIQARLARPLADVSKAIVTYMVAVATALRAGSGPAD 300 LRT+ RLRHD+VMIGRA PLPA +Q RL L VS A Y+ A A+ALR Sbjct: 262 LRTMLRLRHDLVMIGRAAATPLPAPLQQRLGDALKQVSTAATGYLSASASALRHRKHAPP 321 Query: 301 MAPVDAALHAYSEEVAAVRTDGLIRGLPVDAAERFYALGFSLDQMRQNLNDL 352 + P+ AL AY EVAAVR DGL + LP D E F+ALGF+LDQ++QN DL Sbjct: 322 LHPLQKALAAYEVEVAAVRADGLTKELPADRIEPFFALGFALDQLQQNFGDL 373