BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0152.0069.p (531 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767633.1| ABC transporter peptide-binding protein [Bradyr... 634 e-179 ref|YP_004631580.1| ABC transporter substrate-binding protein [O... 193 7e-47 ref|YP_002522871.1| putative periplasmic dipeptide transport sub... 189 8e-46 ref|YP_002290491.1| extracellular solute-binding protein, family... 185 2e-44 ref|YP_001631689.1| extracellular solute-binding protein [Bordet... 183 7e-44 >ref|NP_767633.1| ABC transporter peptide-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46258.1| ABC transporter peptide-binding protein [Bradyrhizobium japonicum USDA 110] Length = 532 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 289/510 (56%), Positives = 379/510 (74%), Gaps = 1/510 (0%) Query: 22 ASAQKKGGTLRLYHNDNPPSTSLLEESTIASVMPFAAVFNNLVVFDPAKVHESIDTVIPD 81 A K+GG LR+YH D+P + S+ E +T + +PF VFNNLV++ S+DT++P+ Sbjct: 24 AGGPKQGGILRMYHRDSPGNASIHEGATYSLNVPFMPVFNNLVIYKQDVAQNSMDTIVPE 83 Query: 82 LAESWSWDQTNTKLTFKLRHGVKWHDGQPFTARDVQCTWRMLIGKSETQDFKRNPRKVWY 141 LAESW+W N LTFKLR GVKWHDG+PFT+ DV+CT+ ML+GKS+ Q F++NPRK WY Sbjct: 84 LAESWAWVNDNKTLTFKLRPGVKWHDGKPFTSADVKCTFDMLMGKSQ-QKFRQNPRKTWY 142 Query: 142 SKLRDVSINGDDEATFELTEPQPGLLALLASAFSVVYPCHVPQQVMRTKPVGTGPFKFVE 201 ++ D+S +GD E +F L PQP LLALLAS ++ VYPCHV MRT P+GTGPFKFVE Sbjct: 143 DQVNDISTDGDLEVSFNLKRPQPSLLALLASGYTPVYPCHVSPGDMRTHPIGTGPFKFVE 202 Query: 202 FRRGDSIRLVRNPDYFKKDRPYLDEIAVRSIDSRATRMLAFATGDYDITFPSDVSIPLMK 261 F+ +SI+L RNPDY+++ RPYLD I + I +R+T +LAF G +D+TFP++VSIPL+K Sbjct: 203 FKANESIKLTRNPDYWREGRPYLDGIELTIIPNRSTAILAFVAGKFDMTFPTEVSIPLLK 262 Query: 262 DVKARAPNAICEMTSTNLQINLLVNHVNPPFDNPDIRKAMSLALDRKAFNSILFEGSGRL 321 DVK++APNA+C + N+ N++VN +PPFDN DIR+AM+LALDRKAF SI+FEG G + Sbjct: 263 DVKSQAPNAVCVVEPNNVATNIIVNSSSPPFDNIDIRRAMALALDRKAFISIMFEGQGDV 322 Query: 322 GGAMQAKPEGEWGMPPEILSTLMGYGPDTGKNLAEAQAIMQKLGYSDAKPLSIKIQTRNL 381 GG M +P G WGMP E+L T+ GYGPD N EA+ +MQK GY K L++KI TRN+ Sbjct: 323 GGTMLPQPNGLWGMPKEMLETIPGYGPDVNANREEAKKLMQKAGYGPDKHLAVKISTRNI 382 Query: 382 PTYRDPAVILADQLKKIYITAELDILDTPRWYSRLQRKDYTIGLNVTGVSVDDPDGNLVE 441 P YRDPAVIL DQLK IYI ELD+++T W+ ++ RKDY +GLN+TG +VDDPD + E Sbjct: 383 PVYRDPAVILIDQLKSIYIDGELDVVETANWFPKIARKDYMLGLNLTGNAVDDPDQSFYE 442 Query: 442 NYSCNSERNYTQYCNAEVDKLLAAQSREVDKDKRRKIVFDIERLLVDDAARPVILHSSAG 501 NYSC SERNYT YCN E++KL QS+E D KR+K+V+DI++ L +D ARP+I H+ G Sbjct: 443 NYSCGSERNYTNYCNKEIEKLFDVQSQETDIAKRKKLVWDIDKKLQEDVARPIIFHARTG 502 Query: 502 NCWQPYVKNFHPHDNSQYNNLRFEDVWLDK 531 +CWQPYVK NS YN R+EDVW+DK Sbjct: 503 SCWQPYVKGVTVMSNSSYNGYRYEDVWMDK 532 >ref|YP_004631580.1| ABC transporter substrate-binding protein [Oligotropha carboxidovorans OM5] gb|AEI01764.1| ABC transporter substrate-binding protein [Oligotropha carboxidovorans OM4] gb|AEI05339.1| ABC transporter substrate-binding protein [Oligotropha carboxidovorans OM5] Length = 527 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 158/538 (29%), Positives = 256/538 (47%), Gaps = 34/538 (6%) Query: 10 VALGFAAMA--ASPASAQ--KKGGTLRLYHNDNPPSTSLLEESTIASVMPFAAVFNNLVV 65 +ALGF+A+A AS A AQ KKGG L+ PP+ ++ A + P +N L+ Sbjct: 8 LALGFSALALMASGADAQTPKKGGVLKFAVGAEPPNYDCHGATSFAFIHPVRPHYNTLLK 67 Query: 66 FDPAKVHESIDTVIPDLAESWSWDQTNTKLTFKLRHGVKWHDGQPFTARDVQCTWRMLIG 125 FD + V DLA SW+ TFKL+ +K+HDG T+ DV+ ++ + Sbjct: 68 FD----EPNYPKVKGDLAASWTVAPDGLTYTFKLKPNIKFHDGSTLTSADVKASYDRIAH 123 Query: 126 KSETQDFKRNPRKVWYSKLRDVSINGDDEATFELTEPQPGLLALLASAFSVVYPC----- 180 + + R+ Y + + + F+L P ++ AS + +Y Sbjct: 124 PPQGV---VSIRQAAYEDITSIETPDANTVVFKLKAPNASMITNFASPWDCIYSAAKLKE 180 Query: 181 --HVPQQVMRTKPVGTGPFKFVEFRRGDSIRLVRNPDYFKKDRPYLDEIAVRSIDSRATR 238 P++ + +GTGPFKFVE G R P+YF+KDRPYLD I + A R Sbjct: 181 DPKFPEKHI----LGTGPFKFVEHAAGSHWVGERFPEYFEKDRPYLDGFRAIFITNTAAR 236 Query: 239 MLAFATGDYDITFPSDVSIPLMKDVKARAPNAICEMTSTNLQINLLVNHVNPPFDNPDIR 298 + A G+ F K V A + + ++ N PF++ +R Sbjct: 237 VNALQAGEVLAEFRGQSPADKKKLVDALGDKVNVYESPWVCSLAVIFNVEKKPFNDARVR 296 Query: 299 KAMSLALDRKAFNSILFEGS--GRLGGAMQAKPEGEWGMPPEILSTLMGYGPDTGKNLAE 356 +A+SLALDR + L + + +GG + +P E L+T G+G D K E Sbjct: 297 RALSLALDRWKGSEALSKIAVVRDVGGVL--RPGYELAASEAELTTYPGFGKDIKKARDE 354 Query: 357 AQAIMQKLGYSDAKPLSIKIQTRNLPT-YRDPAVILADQLKKIYITAELDILDTPRWYSR 415 A+ ++ + G D L K RN+P+ Y V + DQ ++I +TAE + +T + Sbjct: 355 AKKLLAEAGVKD---LKFKFMNRNVPSPYTPVGVFVVDQWRQIGVTAEHEQPETKAYIGN 411 Query: 416 LQRKDYTIGLNVTGVSVDDPDGNLVENYSCN-SERNYTQYCNAEVDKLLAAQSREVDKDK 474 L+ +Y +GL+ +VDDP+ L++ S + S NY++ + ++D+L Q RE+D K Sbjct: 412 LRSGNYEVGLDFACDAVDDPNLQLLKYVSSDKSTINYSRSIDRKIDELYEKQKRELDPKK 471 Query: 475 RRKIVFDIERLLVDDAAR-PVILHSSAGNCWQPYVKNFHPHDNSQYNNLRFEDVWLDK 531 R I+ ++E+ + +AA PVI + W+ + +H S Y N +DVWLD+ Sbjct: 472 RAAILREVEKHALTEAATVPVIWWNRIIVNWK-QLHGWH-MSPSHYINQDLQDVWLDQ 527 >ref|YP_002522871.1| putative periplasmic dipeptide transport substrate-binding protein [Thermomicrobium roseum DSM 5159] gb|ACM05076.1| putative periplasmic dipeptide transport substrate-binding protein [Thermomicrobium roseum DSM 5159] Length = 564 Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 135/501 (26%), Positives = 237/501 (47%), Gaps = 28/501 (5%) Query: 11 ALGFAAMAASPASAQ---KKGGTLRLYHNDNPPSTSLLEESTIASVMPFAAVFNNLVVFD 67 A+ A M A+P Q ++GG LR+ +P + L + +T + A L+ FD Sbjct: 49 AMPTAVMNATPTPPQEAVRRGGILRMNLPGDPANLDLHQATTSTDLWCVAPCLETLLEFD 108 Query: 68 PAKVHESIDTVIPDLAESWSWDQTNTKLTFKLRHGVKWHDGQPFTARDVQCTWRMLIGKS 127 P + ++PDLA W + TF LR GV++HDG PFT++DV T++ +I Sbjct: 109 PNDQTK----ILPDLAIRWDISRDGLTYTFFLRQGVQFHDGSPFTSKDVLVTFQRIISPP 164 Query: 128 ETQDFKRNPRKVWYSKLRDVSINGDDEATFELTEPQPGLLALLASAFSVVYPCHVPQ--- 184 E + +PR V+++ + + D F L +P P LL +A ++ +YP H+ + Sbjct: 165 EGVN---SPRSVFFNTVERIETPDDVTVRFVLKQPDPALLYNVAIPWTGIYPAHLIEAGA 221 Query: 185 QVMRTKP-VGTGPFKFVEFRRGDSIRLVRNPDYFKKDRPYLDEIAVRSIDSRATRMLAFA 243 + TK +GTGPFKF + G + L +NP+Y+ + PYLD I + + A Sbjct: 222 DLRDTKNLIGTGPFKFKSYTPGVTYELEKNPNYWNPNLPYLDGIVFYPMADPSVAAQALI 281 Query: 244 TGDYDITFPSDVSIPLMKDVKARAPNAICEMTSTNLQINLLVNHVNPPFDNPDIRKAMSL 303 G I + +P + + A + + +T + +L PF +P +R+A+SL Sbjct: 282 AG--QIHLNRGLGVPPLDLFQGHADIRVAGIPTTLVWRLVLNGRQFEPFRDPRVRQAISL 339 Query: 304 ALDRKAFNSILFEGSGRLGGAMQAKPEGEWGMPPEILSTLMGYGPDTGKNLAEAQAIMQK 363 A+DR+A + + EG L G M P G W +P + + G+G D + +A+ + + Sbjct: 340 AIDREAMIAAMTEGRSVLSGWMH--PYGAWALPEDRVRQARGFGKDKEADRQQAKQLFAE 397 Query: 364 LGYSDAKPLSIKIQTRNLPTYRDPAVILADQLKKIYITAELDILDTPRWYSRLQRKDYTI 423 G+ + + + P + ++ADQL +I I + L + R+ +++ + Sbjct: 398 AGFPNGFDVELLAFALGTPVTQS---LVADQLGQIGIRVNVQNLQLGEYVQRVVAREFQM 454 Query: 424 GLNVTGVSVDDPDGNLVENYSCNSERNYTQYCNAEVDKLLAAQSREVDKDKRRKIVFDIE 483 L VD+P + N + + T + E+ +L RE+D DKR+++ +++ Sbjct: 455 SLGFNAPWVDEPKSTFGAWITSNEQASLTGLWSDELIQLYQQIERELDIDKRKQLTHELD 514 Query: 484 RLLVDDAA-------RPVILH 497 +DD RPVI H Sbjct: 515 FRTLDDPVFGMIYVYRPVIWH 535 >ref|YP_002290491.1| extracellular solute-binding protein, family 5 [Oligotropha carboxidovorans OM5] gb|ACI94626.1| extracellular solute-binding protein, family 5 [Oligotropha carboxidovorans OM5] Length = 510 Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 152/527 (28%), Positives = 247/527 (46%), Gaps = 32/527 (6%) Query: 19 ASPASAQ--KKGGTLRLYHNDNPPSTSLLEESTIASVMPFAAVFNNLVVFDPAKVHESID 76 AS A AQ KKGG L+ PP+ ++ A + P +N L+ FD + Sbjct: 2 ASGADAQTPKKGGVLKFAVGAEPPNYDCHGATSFAFIHPVRPHYNTLLKFD----EPNYP 57 Query: 77 TVIPDLAESWSWDQTNTKLTFKLRHGVKWHDGQPFTARDVQCTWRMLIGKSETQDFKRNP 136 V DLA SW+ TFKL+ +K+HDG T+ DV+ ++ + + + Sbjct: 58 KVKGDLAASWTVAPDGLTYTFKLKPNIKFHDGSTLTSADVKASYDRIAHPPQGV---VSI 114 Query: 137 RKVWYSKLRDVSINGDDEATFELTEPQPGLLALLASAFSVVYPC-------HVPQQVMRT 189 R+ Y + + + F+L P ++ AS + +Y P++ + Sbjct: 115 RQAAYEDITSIETPDANTVVFKLKAPNASMITNFASPWDCIYSAAKLKEDPKFPEKHI-- 172 Query: 190 KPVGTGPFKFVEFRRGDSIRLVRNPDYFKKDRPYLDEIAVRSIDSRATRMLAFATGDYDI 249 +GTGPFKFVE G R P+YF+KDRPYLD I + A R+ A G+ Sbjct: 173 --LGTGPFKFVEHAAGSHWVGERFPEYFEKDRPYLDGFRAIFITNTAARVNALQAGEVLA 230 Query: 250 TFPSDVSIPLMKDVKARAPNAICEMTSTNLQINLLVNHVNPPFDNPDIRKAMSLALDRKA 309 F K V A + + ++ N PF++ +R+A+SLALDR Sbjct: 231 EFRGQSPADKKKLVDALGDKVNVYESPWVCSLAVIFNVEKKPFNDARVRRALSLALDRWK 290 Query: 310 FNSILFEGS--GRLGGAMQAKPEGEWGMPPEILSTLMGYGPDTGKNLAEAQAIMQKLGYS 367 + L + + +GG + +P E L+T G+G D K EA+ ++ + G Sbjct: 291 GSEALSKIAVVRDVGGVL--RPGYELAASEAELTTYPGFGKDIKKARDEAKKLLAEAGVK 348 Query: 368 DAKPLSIKIQTRNLPT-YRDPAVILADQLKKIYITAELDILDTPRWYSRLQRKDYTIGLN 426 D L K RN+P+ Y V + DQ ++I +TAE + +T + L+ +Y +GL+ Sbjct: 349 D---LKFKFMNRNVPSPYTPVGVFVVDQWRQIGVTAEHEQPETKAYIGNLRSGNYEVGLD 405 Query: 427 VTGVSVDDPDGNLVENYSCN-SERNYTQYCNAEVDKLLAAQSREVDKDKRRKIVFDIERL 485 +VDDP+ L++ S + S NY++ + ++D+L Q RE+D KR I+ ++E+ Sbjct: 406 FACDAVDDPNLQLLKYVSSDKSTINYSRSIDRKIDELYEKQKRELDPKKRAAILREVEKH 465 Query: 486 LVDDAAR-PVILHSSAGNCWQPYVKNFHPHDNSQYNNLRFEDVWLDK 531 + +AA PVI + W+ + +H S Y N +DVWLD+ Sbjct: 466 ALTEAATVPVIWWNRIIVNWK-QLHGWH-MSPSHYINQDLQDVWLDQ 510 >ref|YP_001631689.1| extracellular solute-binding protein [Bordetella petrii DSM 12804] emb|CAP43421.1| probable extracellular solute-binding protein, family 5 [Bordetella petrii] Length = 524 Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 158/558 (28%), Positives = 254/558 (45%), Gaps = 69/558 (12%) Query: 3 FKLVACIVALGFAAMAASPASAQKKGGTLRLYHNDNPPSTSLLEESTIASVMPFAAVFNN 62 KL +AL AA+ + A AQ +GGTLR+ PP L+ + F A Sbjct: 7 LKLSLGALAL-IAAVPMATAQAQTRGGTLRMIVQPEPPI--LIPALNQQAPTQFVA---- 59 Query: 63 LVVFDPAKVHESIDTVI------PDLAESWSWDQTNTKLTFKLRHGVKWHDGQPFTARDV 116 K++ES+ T P LA+SW TF L+ GVKWHDG+PFTA DV Sbjct: 60 ------GKIYESLLTYSFDLKPQPGLAKSWEVAPDGMAYTFHLQEGVKWHDGKPFTADDV 113 Query: 117 QCTWRMLIGKSETQDFKRNPRKVWYSKLRDVSINGDDEATFELTEPQPGLLALLASAFSV 176 + L+ K+ + R + L V D T L P P + + F+ Sbjct: 114 VFSLSELLPKTHAR-----ARVILGRYLDKVEKVDDHTVTIRLKTPFPAFMLMFEPGFAP 168 Query: 177 VYPCHV------PQQVMRTKPVGTGPFKFVEFRRGDSIRLVRNPDYFKKDRPYLDEIAVR 230 + P H+ + KPVGTGPF F E++RG+ I+LVRNP+Y+K+ +PYLDE+ Sbjct: 169 MMPKHIYAGTDYMKNPANQKPVGTGPFMFQEWKRGEYIKLVRNPNYWKQGQPYLDELVFN 228 Query: 231 SIDSRATRMLAFATGDYDITFPSDVSIPLMKDVKARAPNAICEMTSTNL-----QINLLV 285 I A+R +AF G+ D+ D+ +K +++ PN E T+ Q L++ Sbjct: 229 VIPDSASRAVAFERGNVDVLRGGDIDNVDVKRLRS-LPN--VEYTTQGWEMFSPQAYLVL 285 Query: 286 NHVNPPFDNPDIRKAMSLALDRKAFNSILFEGSGRLGGAMQAKPEGEWGMPPEILSTLMG 345 N PP DN +R+A+ AL+RK + +F G G++ + ++T M Sbjct: 286 NMRTPPLDNVKVRQAIMAALNRKLIVNNIFFGLGKVATS-------------PFVTTEMF 332 Query: 346 YG---PDTGKNLAEAQAIMQKLGYSDAKPLSIKIQTRNLP---TYRDPAVILADQLKKIY 399 Y P ++ +A+A++++ G P + ++ +LP T+ + ++++ Sbjct: 333 YDKNMPSLDFDMKKARALIKESG---VDPSAYTLRFLSLPYGSTWDRLGEYIKQSMEQLG 389 Query: 400 ITAELDILDTPRWYSRLQRKDYTIGLNVTGVSVDDPDGNLVENYSCNSE------RNYTQ 453 ++ D W SR D+ + LN T DP + Y ++ N Sbjct: 390 FNINMEATDAGGWASRTGNWDFDLTLNYT-YQYGDPALGVQRLYVASNMVKGSPFANVQG 448 Query: 454 YCNAEVDKLLAAQSREVDKDKRRKIVFDIERLLVDDAARPVILHSSAGNCWQPYVKNFHP 513 Y N E DKL A + EVD KR+++ I+ +LV+D A ++ ++ +KN Sbjct: 449 YNNPEADKLWTAAASEVDPAKRQELYSKIQTILVNDVANGFLVDMEFPTLYRGNIKNL-- 506 Query: 514 HDNSQYNNLRFEDVWLDK 531 + N F DV++ K Sbjct: 507 VQTAIGLNESFSDVYIQK 524