BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0152.0035.p         (99 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004107741.1| binding-protein-dependent transporter inner ...   162   1e-38
ref|YP_001990424.1| ABC transporter inner membrane protein [Rhod...   162   1e-38
ref|NP_946567.1| putative ABC transporter permease [Rhodopseudom...   162   1e-38
ref|YP_531079.1| binding-protein-dependent transport systems inn...   162   2e-38
ref|YP_571144.1| binding-protein-dependent transport systems inn...   161   3e-38

>ref|YP_004107741.1| binding-protein-dependent transporter inner membrane component
           [Rhodopseudomonas palustris DX-1]
 gb|ADU43008.1| binding-protein-dependent transport systems inner membrane
           component [Rhodopseudomonas palustris DX-1]
          Length = 313

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/86 (97%), Positives = 85/86 (98%)

Query: 14  LRHALRNAAVPVITVIGSGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQAMIL 73
           LRHALRNAAVPVITVIG+GFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQ MIL
Sbjct: 228 LRHALRNAAVPVITVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMIL 287

Query: 74  LTSGIYVAVNLLIDLAYTLLDPRIRY 99
           LTSGIYVAVNLLIDLAYTLLDPRIRY
Sbjct: 288 LTSGIYVAVNLLIDLAYTLLDPRIRY 313


>ref|YP_001990424.1| ABC transporter inner membrane protein [Rhodopseudomonas palustris
           TIE-1]
 gb|ACE99948.1| binding-protein-dependent transport systems inner membrane
           component [Rhodopseudomonas palustris TIE-1]
          Length = 313

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/86 (97%), Positives = 85/86 (98%)

Query: 14  LRHALRNAAVPVITVIGSGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQAMIL 73
           LRHALRNAAVPVITVIG+GFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQ MIL
Sbjct: 228 LRHALRNAAVPVITVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMIL 287

Query: 74  LTSGIYVAVNLLIDLAYTLLDPRIRY 99
           LTSGIYVAVNLLIDLAYTLLDPRIRY
Sbjct: 288 LTSGIYVAVNLLIDLAYTLLDPRIRY 313


>ref|NP_946567.1| putative ABC transporter permease [Rhodopseudomonas palustris
           CGA009]
 emb|CAE26659.1| putative ABC transporter, permease protein [Rhodopseudomonas
           palustris CGA009]
          Length = 313

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/86 (97%), Positives = 85/86 (98%)

Query: 14  LRHALRNAAVPVITVIGSGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQAMIL 73
           LRHALRNAAVPVITVIG+GFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQ MIL
Sbjct: 228 LRHALRNAAVPVITVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMIL 287

Query: 74  LTSGIYVAVNLLIDLAYTLLDPRIRY 99
           LTSGIYVAVNLLIDLAYTLLDPRIRY
Sbjct: 288 LTSGIYVAVNLLIDLAYTLLDPRIRY 313


>ref|YP_531079.1| binding-protein-dependent transport systems inner membrane
           component [Rhodopseudomonas palustris BisB18]
 gb|ABD86760.1| binding-protein-dependent transport systems inner membrane
           component [Rhodopseudomonas palustris BisB18]
          Length = 313

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/86 (96%), Positives = 86/86 (100%)

Query: 14  LRHALRNAAVPVITVIGSGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQAMIL 73
           LRHALRNAAVPVITVIG+GFALLISGVVVTESVFNLPG+GRLTVDAVLARDYPVIQAMIL
Sbjct: 228 LRHALRNAAVPVITVIGTGFALLISGVVVTESVFNLPGVGRLTVDAVLARDYPVIQAMIL 287

Query: 74  LTSGIYVAVNLLIDLAYTLLDPRIRY 99
           LTSGIYVAVNLLID+AYTLLDPRIRY
Sbjct: 288 LTSGIYVAVNLLIDVAYTLLDPRIRY 313


>ref|YP_571144.1| binding-protein-dependent transport systems inner membrane
           component [Rhodopseudomonas palustris BisB5]
 gb|ABE41243.1| binding-protein-dependent transport systems inner membrane
           component [Rhodopseudomonas palustris BisB5]
          Length = 313

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/86 (96%), Positives = 85/86 (98%)

Query: 14  LRHALRNAAVPVITVIGSGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQAMIL 73
           LRHALRNAAVPVITVIG+GFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQ MIL
Sbjct: 228 LRHALRNAAVPVITVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMIL 287

Query: 74  LTSGIYVAVNLLIDLAYTLLDPRIRY 99
           LTSGIYVAVNLLID+AYTLLDPRIRY
Sbjct: 288 LTSGIYVAVNLLIDVAYTLLDPRIRY 313