BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0152.0003.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001672184.1| transposase IS3/IS911 family protein [Caulob...    45   0.004
ref|YP_003906061.1| transposase IS3/IS911 family protein [Burkho...    41   0.068
ref|ZP_02889307.1| transposase IS3/IS911 family protein [Burkhol...    40   0.13 
ref|ZP_00208750.1| COG2963: Transposase and inactivated derivati...    39   0.22 
ref|YP_840481.1| transposase IS3/IS911 family protein [Burkholde...    39   0.26 

>ref|YP_001672184.1| transposase IS3/IS911 family protein [Caulobacter sp. K31]
 gb|ABZ74525.1| transposase IS3/IS911 family protein [Caulobacter sp. K31]
          Length = 113

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 21/85 (24%)

Query: 2   WRRKFATAASFQAPGFVPVRIASESGPATADEPDRFASAHKVLPQMASPPGKLGGMIEIE 61
           WRRK     +   P FVPVR+AS+                       +P  +  G IEIE
Sbjct: 47  WRRKVRQHGAPAEPMFVPVRLASDE---------------------VAPVARSEGRIEIE 85

Query: 62  VGGARIRVEPGVELATLSTVLSALR 86
           + GARI V   V+ ATL  V +ALR
Sbjct: 86  LAGARIWVTSAVDAATLRVVFAALR 110


>ref|YP_003906061.1| transposase IS3/IS911 family protein [Burkholderia sp. CCGE1003]
 gb|ADN56770.1| transposase IS3/IS911 family protein [Burkholderia sp. CCGE1003]
          Length = 138

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 2   WRRKFATAASFQAPGFVPVRIASESGPATADEPDRFASAHKVLPQMASPPGKLGGMIEIE 61
           WRR +  A  ++ P  +PV +A E G           S  K  P +A       G+IEI 
Sbjct: 55  WRRAY-QAGQYEPPTLLPVEVAHEEGTIADTVALPVQSQSKAHPVVA-------GVIEIS 106

Query: 62  VGGARIRVEPGVELATLSTVLSALRG 87
           VG A +R+E   + ATL  VL  LR 
Sbjct: 107 VGIALVRIEGTPDAATLRVVLRTLRA 132


>ref|ZP_02889307.1| transposase IS3/IS911 family protein [Burkholderia ambifaria
           IOP40-10]
 gb|EDT05062.1| transposase IS3/IS911 family protein [Burkholderia ambifaria
           IOP40-10]
          Length = 107

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 2   WRRKFATAASFQAPGFVPVRIASESGPATADEPDRFASAHKVLPQMASPPGKLGGMIEIE 61
           WRR    A  + + G +PV++ +     T   P    SA   +P          G IEI 
Sbjct: 29  WRRSL-RAGEYDSAGLLPVKVETSLAETTPLVP---VSAPTTIPT---------GAIEIN 75

Query: 62  VGGARIRVEPGVELATLSTVLSALRGI 88
           VG A +R+E   + +TL+ VL  LRG+
Sbjct: 76  VGNAHVRIEGAPDESTLTLVLHMLRGM 102


>ref|ZP_00208750.1| COG2963: Transposase and inactivated derivatives [Magnetospirillum
           magnetotacticum MS-1]
          Length = 137

 Score = 39.3 bits (90), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 2   WRRKFATA---ASFQAPGFVPVRIASESGPAT-ADEPDRFASAHKVLPQMASPPGKLGGM 57
           WRR+          QAP FVPV I  E  PA  A +PD  + A +  P+ A    +  G+
Sbjct: 51  WRRQARQGRLGGDGQAPVFVPVAITLEPSPAVPALQPDDPSVAGQ--PRRAR---RKTGI 105

Query: 58  IEIEVGGA-RIRVEPGVELATLSTVLSALRG 87
           +EI++GG  R++V+  V+ A L  VL AL G
Sbjct: 106 MEIDLGGGRRLKVDRDVDAAALRRVLDALEG 136


>ref|YP_840481.1| transposase IS3/IS911 family protein [Burkholderia cenocepacia
           HI2424]
 ref|ZP_04940474.1| Transposase [Burkholderia cenocepacia PC184]
 gb|ABK13588.1| transposase IS3/IS911 family protein [Burkholderia cenocepacia
           HI2424]
 gb|EAY63645.1| Transposase [Burkholderia cenocepacia PC184]
          Length = 131

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 15/88 (17%)

Query: 2   WRRKFATAASFQAPGFVPVRIASESGPATADEPDRFASAHKVLPQMASPPGKL-GGMIEI 60
           WRR    A  + + G +PV++ +     T   P              SPP  +  G IEI
Sbjct: 53  WRRSL-RAGEYDSAGLLPVKVETPLAETTPLVP-------------VSPPTTIPTGAIEI 98

Query: 61  EVGGARIRVEPGVELATLSTVLSALRGI 88
            VG A +R+E     +TL+ VL  LRG+
Sbjct: 99  NVGNAHVRIEGAPNESTLTLVLHMLRGM 126