BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0151.0008.p         (158 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_568594.1| transcription elongation factor GreA [Rhodopseu...   301   3e-80
ref|YP_001203457.1| transcription elongation factor GreA [Bradyr...   299   9e-80
ref|YP_485136.1| transcription elongation factor GreA [Rhodopseu...   298   1e-79
ref|YP_533689.1| transcription elongation factor GreA [Rhodopseu...   298   3e-79
ref|NP_949408.1| transcription elongation factor GreA [Rhodopseu...   295   1e-78

>ref|YP_568594.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           BisB5]
 gb|ABE38693.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           BisB5]
          Length = 165

 Score =  301 bits (770), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/158 (93%), Positives = 155/158 (98%)

Query: 1   MMDKVPMTAGGYAALTDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
           M++KVPMTAGGYAAL+DELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE
Sbjct: 8   MVEKVPMTAGGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 67

Query: 61  GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKGRI 120
           GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGE EADAKKG+I
Sbjct: 68  GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGESEADAKKGKI 127

Query: 121 SITSPLARALIGKKKGTTVEVMAPGGAKAYEITKVEWR 158
           SITSPLARALIGK +GT+VEV+APGGAKAYEI KVEWR
Sbjct: 128 SITSPLARALIGKTQGTSVEVVAPGGAKAYEIAKVEWR 165


>ref|YP_001203457.1| transcription elongation factor GreA [Bradyrhizobium sp. ORS 278]
 emb|CAL75220.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Bradyrhizobium sp. ORS 278]
          Length = 188

 Score =  299 bits (765), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 147/158 (93%), Positives = 154/158 (97%)

Query: 1   MMDKVPMTAGGYAALTDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
           M++KVPMTAGGYAAL +ELK RQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE
Sbjct: 31  MVEKVPMTAGGYAALENELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 90

Query: 61  GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKGRI 120
           GRIAELEDKLARADIID++KLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKG+I
Sbjct: 91  GRIAELEDKLARADIIDVAKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKGKI 150

Query: 121 SITSPLARALIGKKKGTTVEVMAPGGAKAYEITKVEWR 158
           SITSPLARALIGKK GTTVEVMAPGGAK+YEI KVEWR
Sbjct: 151 SITSPLARALIGKKMGTTVEVMAPGGAKSYEIAKVEWR 188


>ref|YP_485136.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           HaA2]
 gb|ABD06225.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           HaA2]
          Length = 174

 Score =  298 bits (764), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 148/158 (93%), Positives = 154/158 (97%)

Query: 1   MMDKVPMTAGGYAALTDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
           M++KVPMTAGGYAAL+DELK RQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE
Sbjct: 17  MVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 76

Query: 61  GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKGRI 120
           GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGE EADAKKG+I
Sbjct: 77  GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGENEADAKKGKI 136

Query: 121 SITSPLARALIGKKKGTTVEVMAPGGAKAYEITKVEWR 158
           SITSPLARALIGK KGT+VEV+APGGAKAYEI KVEWR
Sbjct: 137 SITSPLARALIGKTKGTSVEVVAPGGAKAYEIAKVEWR 174


>ref|YP_533689.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           BisB18]
 sp|Q20ZR6.1|GREA_RHOPB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gb|ABD89370.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           BisB18]
          Length = 158

 Score =  298 bits (762), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 149/158 (94%), Positives = 153/158 (96%)

Query: 1   MMDKVPMTAGGYAALTDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
           M++KVPMTAGGYAAL  ELK RQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE
Sbjct: 1   MIEKVPMTAGGYAALEVELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60

Query: 61  GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKGRI 120
           GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGE EADAKKGRI
Sbjct: 61  GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEPEADAKKGRI 120

Query: 121 SITSPLARALIGKKKGTTVEVMAPGGAKAYEITKVEWR 158
           SITSPLARALIGKKKG +VEV+APGGAKAYEITKVEWR
Sbjct: 121 SITSPLARALIGKKKGASVEVVAPGGAKAYEITKVEWR 158


>ref|NP_949408.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           CGA009]
 ref|YP_001993572.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           TIE-1]
 sp|Q6N2H8.1|GREA_RHOPA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 sp|B3QJZ1.1|GREA_RHOPT RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 emb|CAE29513.1| transcriptional elongation factor greA [Rhodopseudomonas palustris
           CGA009]
 gb|ACF03097.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           TIE-1]
          Length = 158

 Score =  295 bits (756), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 143/158 (90%), Positives = 153/158 (96%)

Query: 1   MMDKVPMTAGGYAALTDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
           M++K+PMTA GYAAL+DELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE
Sbjct: 1   MVEKIPMTASGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60

Query: 61  GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKGRI 120
           GRI ELEDKLARADIID+SKLSGDT+KFGATVTLIDEDTEKKAVWQIVGE EADAKKG+I
Sbjct: 61  GRINELEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKI 120

Query: 121 SITSPLARALIGKKKGTTVEVMAPGGAKAYEITKVEWR 158
           SITSPLARALIGKK G++VEV+APGGAKAYEI KVEWR
Sbjct: 121 SITSPLARALIGKKAGSSVEVVAPGGAKAYEIAKVEWR 158