BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0150.0002.p         (87 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_570252.1| type III secretion proteins, related to flagell...   140   6e-32
ref|YP_533258.1| type III secretion protein [Rhodopseudomonas pa...   139   1e-31
ref|ZP_08630351.1| flagellar biosynthesis protein FlhB [Bradyrhi...   138   2e-31
ref|YP_782453.1| type III secretion protein [Rhodopseudomonas pa...   138   3e-31
ref|YP_001992595.1| type III secretion protein [Rhodopseudomonas...   138   3e-31

>ref|YP_570252.1| type III secretion proteins, related to flagellar biosynthesis
          protein FlhB [Rhodopseudomonas palustris BisB5]
 gb|ABE40351.1| type III secretion proteins, related to flagellar biosynthesis
          protein FlhB [Rhodopseudomonas palustris BisB5]
          Length = 88

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 77/85 (90%)

Query: 3  EANNQLAVALHYDHAGAPRVVAKGKGAIGARIIEVAKANDIPIEENEVLAGALSNVELGD 62
          E  NQ+AVALHYD AGAPRVVAKGKG IGA+IIEVAK +DIPIEENEVLAGALS+VELG+
Sbjct: 4  EVKNQIAVALHYDRAGAPRVVAKGKGTIGAKIIEVAKQHDIPIEENEVLAGALSHVELGE 63

Query: 63 EIPAELYKAVAEVLVFVLRMSGRAR 87
          EIP ELYKAVAEVL FVL++SGR R
Sbjct: 64 EIPEELYKAVAEVLAFVLKLSGRGR 88


>ref|YP_533258.1| type III secretion protein [Rhodopseudomonas palustris BisB18]
 gb|ABD88939.1| type III secretion protein [Rhodopseudomonas palustris BisB18]
          Length = 88

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/86 (77%), Positives = 78/86 (90%)

Query: 2  SEANNQLAVALHYDHAGAPRVVAKGKGAIGARIIEVAKANDIPIEENEVLAGALSNVELG 61
          ++  NQ+AVALHYD  GAP V+AKGKGAIGA+I+EVA+A+DIPIEENE+LAGALS VE+G
Sbjct: 3  AQGPNQIAVALHYDRTGAPTVIAKGKGAIGAKIVEVARAHDIPIEENEILAGALSKVEIG 62

Query: 62 DEIPAELYKAVAEVLVFVLRMSGRAR 87
          DEIP ELYKAVAEVLVFVLR+SGR R
Sbjct: 63 DEIPQELYKAVAEVLVFVLRLSGRVR 88


>ref|ZP_08630351.1| flagellar biosynthesis protein FlhB [Bradyrhizobiaceae bacterium
          SG-6C]
 gb|EGP06730.1| flagellar biosynthesis protein FlhB [Bradyrhizobiaceae bacterium
          SG-6C]
          Length = 88

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/85 (76%), Positives = 77/85 (90%)

Query: 3  EANNQLAVALHYDHAGAPRVVAKGKGAIGARIIEVAKANDIPIEENEVLAGALSNVELGD 62
          +  ++LAVALHYD  GAPRVVAKGKG +G +IIE+A+ NDIPI+ENEVLAGALSNVELGD
Sbjct: 4  DTKSRLAVALHYDKKGAPRVVAKGKGTVGEKIIEIARENDIPIQENEVLAGALSNVELGD 63

Query: 63 EIPAELYKAVAEVLVFVLRMSGRAR 87
          EIPAELYKAVAEVL+FV+R++GR R
Sbjct: 64 EIPAELYKAVAEVLIFVMRLTGRLR 88


>ref|YP_782453.1| type III secretion protein [Rhodopseudomonas palustris BisA53]
 gb|ABJ07473.1| type III secretion protein [Rhodopseudomonas palustris BisA53]
          Length = 88

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 76/83 (91%)

Query: 5  NNQLAVALHYDHAGAPRVVAKGKGAIGARIIEVAKANDIPIEENEVLAGALSNVELGDEI 64
          +  LA+ALHYD  GAP VVAKGKGAIGA+IIEVAKA+D+PIEENEVLAGALS VELG+EI
Sbjct: 6  SETLAIALHYDQLGAPLVVAKGKGAIGAKIIEVAKAHDVPIEENEVLAGALSKVELGEEI 65

Query: 65 PAELYKAVAEVLVFVLRMSGRAR 87
          P ELYKAVAEVLVFVLR+SGRAR
Sbjct: 66 PQELYKAVAEVLVFVLRLSGRAR 88


>ref|YP_001992595.1| type III secretion protein [Rhodopseudomonas palustris TIE-1]
 ref|YP_004108550.1| type III secretion exporter [Rhodopseudomonas palustris DX-1]
 gb|ACF02120.1| type III secretion protein [Rhodopseudomonas palustris TIE-1]
 gb|ADU43817.1| type III secretion exporter [Rhodopseudomonas palustris DX-1]
          Length = 91

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/84 (79%), Positives = 77/84 (91%)

Query: 2  SEANNQLAVALHYDHAGAPRVVAKGKGAIGARIIEVAKANDIPIEENEVLAGALSNVELG 61
          ++  N LA+ALHYD+AGAPRVVAKGKG +GA+IIEVAK +DIPIEENE+LAGALS+VELG
Sbjct: 4  TDTKNPLAIALHYDYAGAPRVVAKGKGVLGAKIIEVAKQHDIPIEENEMLAGALSHVELG 63

Query: 62 DEIPAELYKAVAEVLVFVLRMSGR 85
          DEIP ELYKAVAEVL FVLR+SGR
Sbjct: 64 DEIPEELYKAVAEVLAFVLRLSGR 87