BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0004.p (426 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772566.1| hypothetical protein bll5926 [Bradyrhizobium ja... 542 e-152 ref|YP_001207108.1| putative O-antigen ligase (RfaL-like) [Brady... 534 e-149 ref|YP_001241527.1| putative O-antigen ligase [Bradyrhizobium sp... 525 e-147 ref|YP_578032.1| O-antigen polymerase [Nitrobacter hamburgensis ... 468 e-129 ref|ZP_08630762.1| hypothetical protein CSIRO_3872 [Bradyrhizobi... 389 e-106 >ref|NP_772566.1| hypothetical protein bll5926 [Bradyrhizobium japonicum USDA 110] dbj|BAC51191.1| bll5926 [Bradyrhizobium japonicum USDA 110] Length = 428 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 285/401 (71%), Positives = 328/401 (81%), Gaps = 2/401 (0%) Query: 14 RDPARWQTATDVVAVLIALSLPWSTSLVGIFGVVLLIAIAPTVDLKAFWALLKRPICLAP 73 R PA W D+ A+L A SLPWSTSL GIF ++L+ + P +D++AF LKRPIC+AP Sbjct: 18 RSPAAWSETVDLFAILTAASLPWSTSLAGIFNALMLLCMVPFLDVRAFVQSLKRPICVAP 77 Query: 74 VALFCLALVGTLWSDAAWGARFYAVGPTAKLLVLPVLLYHFQRSDRGTWVFVAFLVSCTL 133 +AL LALVGTLWSDA WGARFYAV PT KLLVLPVLLYHF+RS RG WVF+AFLVSC L Sbjct: 78 IALVLLALVGTLWSDATWGARFYAVNPTVKLLVLPVLLYHFERSRRGNWVFIAFLVSCAL 137 Query: 134 LMLMSWLVLAYPHLALRAPAPGEQGVFVKNYIDQSQEFTLCAVALAYPVVMLLRAKRILP 193 L +MSW+V YP LAL++ E+G+FVKNYIDQSQEFTLCAVALAYP+VMLLR KR Sbjct: 138 LSVMSWIVAFYPDLALKSDRV-ERGIFVKNYIDQSQEFTLCAVALAYPIVMLLRQKRYWF 196 Query: 194 AMLLIAIALSLFANMAMVVVSRTALVTVPIMFAVFALLHLRWRSIVLILCAAAALSVVAW 253 A LL A+ALS F NMA VVVSRTALVTVPIM VFALLHLRWRSI +I A A + +AW Sbjct: 197 AGLLAALALSFFVNMAFVVVSRTALVTVPIMVGVFALLHLRWRSIAIIAAALIAGAAIAW 256 Query: 254 YGSSQLRSTAESFERDYKLYMERNEPTSLGLRLEFWRKSLGFFAEAPVIGHGTGATRGLF 313 S QLR TA++F DY Y+E+ EPTS+GLRLEFWRKSLGFFAEAPV+GHGTG+TRGLF Sbjct: 257 QASPQLRKTADTFASDYTRYVEKGEPTSMGLRLEFWRKSLGFFAEAPVMGHGTGSTRGLF 316 Query: 314 ERVA-KGGVTQASGEVIGNPHNQTLNVAVQWGIVGVAILYAMWLLHLLLFRGDGLVNWIG 372 ERVA G QAS EVIGNPHNQTLNVAVQWGI+G+ +LYA+W+LHL LFRGDGL NW+G Sbjct: 317 ERVATHGAQNQASAEVIGNPHNQTLNVAVQWGIIGIVVLYAIWILHLRLFRGDGLANWVG 376 Query: 373 LLVVVQNISSSLFNSHIFDFHEGWMYVLGVGVAGGMALKGQ 413 LLVVVQN+ +SLFNSH+FDFHEGWMYV+GVGVAGG+ L+ Q Sbjct: 377 LLVVVQNVFTSLFNSHLFDFHEGWMYVIGVGVAGGIVLQAQ 417 >ref|YP_001207108.1| putative O-antigen ligase (RfaL-like) [Bradyrhizobium sp. ORS 278] emb|CAL78891.1| putative O-antigen ligase (RfaL-like) [Bradyrhizobium sp. ORS 278] Length = 427 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 267/408 (65%), Positives = 315/408 (77%), Gaps = 2/408 (0%) Query: 4 PAGAAACPAWRDPARWQTATDVVAVLIALSLPWSTSLVGIFGVVLLIAIAPTVDLKAFWA 63 P A WRDPA W+T DVVAVL+A SLPWSTSLV I GVV+LI + P +DL Sbjct: 8 PGPALLARRWRDPAAWRTTVDVVAVLLAASLPWSTSLVSILGVVMLITMVPFLDLDRLLQ 67 Query: 64 LLKRPICLAPVALFCLALVGTLWSDAAWGARFYAVGPTAKLLVLPVLLYHFQRSDRGTWV 123 +LKRPI LAP+ALF LALVGTLWSDAAWGAR YAVGP AKLLVLP LLYHFQRS+RG WV Sbjct: 68 ILKRPISLAPIALFVLALVGTLWSDAAWGARLYAVGPAAKLLVLPALLYHFQRSERGLWV 127 Query: 124 FVAFLVSCTLLMLMSWLVLAYPHLALRAPAPGEQGVFVKNYIDQSQEFTLCAVALAYPVV 183 F AFL SC L+++MS V P LAL+A A ++G+FVKNYIDQ QEF+LCAVALAYP+ Sbjct: 128 FTAFLASCVLMVVMSTAVGFNPALALKANA--DRGIFVKNYIDQGQEFSLCAVALAYPIA 185 Query: 184 MLLRAKRILPAMLLIAIALSLFANMAMVVVSRTALVTVPIMFAVFALLHLRWRSIVLILC 243 LLRA+R +PA +L AI ++ ANM +VVSRTALVT+P++ AVF L+HL+WR+ +LI Sbjct: 186 QLLRARRFVPAGILTAIMIAFLANMIFIVVSRTALVTIPVLLAVFGLIHLKWRANLLIAV 245 Query: 244 AAAALSVVAWYGSSQLRSTAESFERDYKLYMERNEPTSLGLRLEFWRKSLGFFAEAPVIG 303 +A + + AW S QL+ +F + Y+ Y TS+G RLEFWRKSL FFA+APVIG Sbjct: 246 SAVVIGLAAWSVSPQLQQKVATFTQQYQDYRNDRAVTSIGERLEFWRKSLHFFADAPVIG 305 Query: 304 HGTGATRGLFERVAKGGVTQASGEVIGNPHNQTLNVAVQWGIVGVAILYAMWLLHLLLFR 363 HG+G+TR LFE A A+G V+GNPHNQTLNVAVQWG +GV +LYAMW LHLLLFR Sbjct: 306 HGSGSTRHLFELAASDRTDLAAGTVVGNPHNQTLNVAVQWGTLGVVVLYAMWALHLLLFR 365 Query: 364 GDGLVNWIGLLVVVQNISSSLFNSHIFDFHEGWMYVLGVGVAGGMALK 411 GDGLV WIGLLVVVQNI +SLFNSHIFDFHEGWMYV+GVGVAGGM L+ Sbjct: 366 GDGLVPWIGLLVVVQNIFTSLFNSHIFDFHEGWMYVIGVGVAGGMVLR 413 >ref|YP_001241527.1| putative O-antigen ligase [Bradyrhizobium sp. BTAi1] gb|ABQ37621.1| putative O-antigen ligase [Bradyrhizobium sp. BTAi1] Length = 427 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 266/410 (64%), Positives = 313/410 (76%), Gaps = 2/410 (0%) Query: 4 PAGAAACPAWRDPARWQTATDVVAVLIALSLPWSTSLVGIFGVVLLIAIAPTVDLKAFWA 63 PA WRDPA W+T DVVA+L+A SLPWSTSLV I GVV+LI + P +DL Sbjct: 8 PAPTLLARRWRDPAAWRTTVDVVAILLAASLPWSTSLVSILGVVMLITMLPFLDLARLLQ 67 Query: 64 LLKRPICLAPVALFCLALVGTLWSDAAWGARFYAVGPTAKLLVLPVLLYHFQRSDRGTWV 123 +LKRPI LAP+ALF LALVGTLWSDAAWGAR YAVGP AKLLVLP L YHF+RS+RG WV Sbjct: 68 ILKRPISLAPIALFLLALVGTLWSDAAWGARLYAVGPAAKLLVLPGLFYHFERSERGLWV 127 Query: 124 FVAFLVSCTLLMLMSWLVLAYPHLALRAPAPGEQGVFVKNYIDQSQEFTLCAVALAYPVV 183 F AFL SC L++ MS V P LAL+A A ++G+FVKNYIDQ QEF+LCAVALAYP+ Sbjct: 128 FTAFLASCVLMVGMSTAVAFNPALALKANA--DRGIFVKNYIDQGQEFSLCAVALAYPIA 185 Query: 184 MLLRAKRILPAMLLIAIALSLFANMAMVVVSRTALVTVPIMFAVFALLHLRWRSIVLILC 243 LLRA+R PA LL AI ++ ANM +VVSRTALVT+PI+ AVF L+HL+WR+ +LI Sbjct: 186 QLLRARRFAPAALLTAIMIAFLANMIFIVVSRTALVTIPILLAVFGLIHLKWRANLLIAV 245 Query: 244 AAAALSVVAWYGSSQLRSTAESFERDYKLYMERNEPTSLGLRLEFWRKSLGFFAEAPVIG 303 +A AL + AW S QL++ +F Y+ Y TS+G RLEFWRKSL FFA+AP+IG Sbjct: 246 SALALGLAAWSVSPQLQAKVATFTSQYQDYRNDRGVTSIGERLEFWRKSLRFFADAPLIG 305 Query: 304 HGTGATRGLFERVAKGGVTQASGEVIGNPHNQTLNVAVQWGIVGVAILYAMWLLHLLLFR 363 HG+G+TR LFE A A+G V+GNPHNQTLNVAVQWG +GV ILYAMW +HLL FR Sbjct: 306 HGSGSTRHLFELAASERSDLAAGTVVGNPHNQTLNVAVQWGTLGVIILYAMWAVHLLQFR 365 Query: 364 GDGLVNWIGLLVVVQNISSSLFNSHIFDFHEGWMYVLGVGVAGGMALKGQ 413 GDGLV WIGLLVVVQNI +SLFNSHIFDFHEGWMYV+GVGVAGGM L+ + Sbjct: 366 GDGLVPWIGLLVVVQNIFTSLFNSHIFDFHEGWMYVIGVGVAGGMLLRSK 415 >ref|YP_578032.1| O-antigen polymerase [Nitrobacter hamburgensis X14] gb|ABE63572.1| O-antigen polymerase [Nitrobacter hamburgensis X14] Length = 434 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 240/399 (60%), Positives = 287/399 (71%), Gaps = 4/399 (1%) Query: 15 DPARWQTATDVVAVLIALSLPWSTSLVGIFGVVLLIAIAPTVDLKAFWALLKRPICLAPV 74 PA D++AVLIA SLPWSTSL IF V+ L A+ PT++ L KRPIC+ PV Sbjct: 32 SPATALRNLDILAVLIAASLPWSTSLPAIFAVIWLFALVPTIE-PTLLQLFKRPICILPV 90 Query: 75 ALFCLALVGTLWSDAAWGARFYAVGPTAKLLVLPVLLYHFQRSDRGTWVFVAFLVSCTLL 134 A F LAL GTLWS A W AR +AVGP AKLLV+P+L+YHF+RS RG WVF AFLVSC LL Sbjct: 91 AFFVLALAGTLWSSAPWTARLHAVGPLAKLLVIPLLIYHFRRSSRGQWVFTAFLVSCALL 150 Query: 135 MLMSWLVLAYPHLALRAPAPGEQGVFVKNYIDQSQEFTLCAVALAYPVVMLLRAKRILPA 194 M+MSW+V P LAL++ A GV +KNYIDQSQEF LCAVALAYPVV LL KRI A Sbjct: 151 MIMSWIVAFDPRLALKSGA--YYGVPIKNYIDQSQEFALCAVALAYPVVHLLLQKRIKEA 208 Query: 195 MLLIAIALSLFANMAMVVVSRTALVTVPIMFAVFALLHLRWRSIVLILCAAAALSVVAWY 254 LL+ +A+S ANM VVVSRTALVT+P+M +F LHL R ++ + C VV W+ Sbjct: 209 ALLLIVAVSFVANMMFVVVSRTALVTMPVMLGIFMFLHLTPRRMIAVSCTTLLAGVVMWF 268 Query: 255 GSSQLRSTAESFERDYKLYMERNEPTSLGLRLEFWRKSLGFFAEAPVIGHGTGATRGLFE 314 S L+S SF Y Y ++ TS+GLRLEFWRKSL FF +AP+ GHGTG+ +GLF Sbjct: 269 ASPSLQSRVASFSSQYDQYETSDQATSIGLRLEFWRKSLRFFVDAPLAGHGTGSVQGLFT 328 Query: 315 RVAKGGVTQASGEVIGNPHNQTLNVAVQWGIVGVAILYAMWLLHLLLFRGDGLVNWIGLL 374 A G T A+ EV+ NPHNQTLN AVQWG +G+ +LYAMWL HL LFRG L +W+GLL Sbjct: 329 AAAVGQ-TGAAAEVVNNPHNQTLNAAVQWGSLGILVLYAMWLFHLSLFRGTSLADWVGLL 387 Query: 375 VVVQNISSSLFNSHIFDFHEGWMYVLGVGVAGGMALKGQ 413 VV QN+ +SLFNSH+FDFHEGWMYVLGVGVAGGM L+ + Sbjct: 388 VVAQNMMTSLFNSHLFDFHEGWMYVLGVGVAGGMVLQTR 426 >ref|ZP_08630762.1| hypothetical protein CSIRO_3872 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06616.1| hypothetical protein CSIRO_3872 [Bradyrhizobiaceae bacterium SG-6C] Length = 430 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 212/400 (53%), Positives = 264/400 (66%), Gaps = 4/400 (1%) Query: 14 RDPARWQTATDVVAVLIALSLPWSTSLVGIFGVVLLIAIAPTVDLKAFWALLKRPICLAP 73 R+ A W A D+ VL+A+SLPWSTSLV IF V L + P + + F +KRP L P Sbjct: 18 RNTAAWMKAADIAVVLLAISLPWSTSLVAIFAVAWLALLTPAIQWQEFLDSMKRPASLTP 77 Query: 74 VALFCLALVGTLWSDAA-WGARFYAVGPTAKLLVLPVLLYHFQRSDRGTWVFVAFLVSCT 132 + LF LA+VGTLW+ W ARF+ + P AKLL +PVL YHF+RS RG WV +AFL SCT Sbjct: 78 LLLFALAVVGTLWATGVPWAARFHGINPAAKLLAIPVLFYHFERSGRGLWVVLAFLASCT 137 Query: 133 LLMLMSWLVLAYPHLALRAPAPGEQGVFVKNYIDQSQEFTLCAVALAYPVVMLLRAKRIL 192 +ML SWL+ P LA PA GV VKNYI QSQEF LCA A + +A R Sbjct: 138 AVMLASWLMFVDPRLAFD-PAR-SVGVPVKNYIAQSQEFALCAFAAFGAAIYTAKAGRRG 195 Query: 193 PAMLLIAIALSLFANMAMVVVSRTALVTVPIMFAVFALLHLRWRSIVLILCAAAALSVVA 252 A+LL+ + + ANMA V SRT V +P++F V A + R V ++ AA++ A Sbjct: 196 TAVLLLGLGVGFLANMAFVASSRTVFVCIPVLFVVLAARYFSGRGFVALMAGVAAVTAAA 255 Query: 253 WYGSSQLRSTAESFERDYKLYMERNEPTSLGLRLEFWRKSLGFFAEAPVIGHGTGATRGL 312 W S LR + +Y+ Y + N TS+G RLEFWRKS+ F AEAP+IGHGTG+T+ L Sbjct: 256 WMSSPYLRMRVDMIGSEYQRYHQSNAVTSVGERLEFWRKSIKFAAEAPLIGHGTGSTKTL 315 Query: 313 FERVAKGGVTQASGEVIGNPHNQTLNVAVQWGIVGVAILYAMWLLHLLLFRGDGLVNWIG 372 FE+ A G T AS +VIGNPHNQTLNVAVQWG++G +LYAMWL HL LF G G+ WIG Sbjct: 316 FEQDAVGQ-TGASAQVIGNPHNQTLNVAVQWGLIGCLVLYAMWLAHLRLFIGSGMAAWIG 374 Query: 373 LLVVVQNISSSLFNSHIFDFHEGWMYVLGVGVAGGMALKG 412 L+ VV+N SSL NSH+FDFHEGW+YVL VGV GGM L+G Sbjct: 375 LVAVVENFVSSLLNSHLFDFHEGWIYVLAVGVVGGMVLRG 414