BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0008.p         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08631017.1| hypothetical protein CSIRO_4128 [Bradyrhizobi...   101   3e-20
ref|NP_773323.1| hypothetical protein bsr6683 [Bradyrhizobium ja...    95   4e-18
ref|YP_780976.1| hypothetical protein RPE_2052 [Rhodopseudomonas...    93   1e-17
ref|YP_004108098.1| hypothetical protein Rpdx1_1748 [Rhodopseudo...    92   2e-17
ref|YP_570572.1| hypothetical protein RPD_3448 [Rhodopseudomonas...    91   6e-17

>ref|ZP_08631017.1| hypothetical protein CSIRO_4128 [Bradyrhizobiaceae bacterium
          SG-6C]
 gb|EGP06317.1| hypothetical protein CSIRO_4128 [Bradyrhizobiaceae bacterium
          SG-6C]
          Length = 95

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/96 (75%), Positives = 80/96 (83%), Gaps = 3/96 (3%)

Query: 1  MKKTLAALVAVTTIAGSLAVA-PAAKAGDGGAVAAGVAGGLIGGALLGGAIAGARPAPVY 59
          MKK L+A +AV T+AGSLA A PAAKA DGG +AAGVAGGLIGGAL+GGAIA +RPA  Y
Sbjct: 1  MKKVLSAFLAVATVAGSLATAMPAAKA-DGGRIAAGVAGGLIGGALIGGAIASSRPAYGY 59

Query: 60 -VAPAPVYVEEAPCRMVRERFWDGYGWRFRRIQVCD 94
            AP PVYVEE  CR+VRERFWDGYGWR RR+QVCD
Sbjct: 60 GYAPGPVYVEEPACRLVRERFWDGYGWRVRRVQVCD 95


>ref|NP_773323.1| hypothetical protein bsr6683 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51948.1| bsr6683 [Bradyrhizobium japonicum USDA 110]
          Length = 93

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 9/97 (9%)

Query: 1  MKKTLAALVAVTTIAGSLAVA-PAAKAGDGGAVAAGVAGGLIGGALLGGAIAGARPA--- 56
          MKKTL A + V T+AGSL  A P+AKA DG  V AG+A GLIGGA++GGAIA +RPA   
Sbjct: 1  MKKTLVAALTVATVAGSLVTAAPSAKAHDG--VGAGIAAGLIGGAIVGGAIASSRPAYGG 58

Query: 57 PVYVAPAPVYVEEAPCRMVRERFWDGYGWRFRRIQVC 93
          PVYVA  P     APC   R+R+WDGYGW  R ++VC
Sbjct: 59 PVYVAEPP---PPAPCYWQRQRYWDGYGWVIRPVRVC 92


>ref|YP_780976.1| hypothetical protein RPE_2052 [Rhodopseudomonas palustris BisA53]
 gb|ABJ05996.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisA53]
          Length = 95

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/98 (75%), Positives = 82/98 (83%), Gaps = 7/98 (7%)

Query: 1  MKKTLAALVAVTTIAGSL-AVAPAAKAGDGGAVAAGVAGGLIGGALLGGAIAGARPAPVY 59
          MKKT++AL+AV TIAGSL +VAPAAKA DGG +AAGVAGGLIGGALLGGAIA +RPA  Y
Sbjct: 1  MKKTVSALLAVATIAGSLVSVAPAAKA-DGGRIAAGVAGGLIGGALLGGAIAASRPA--Y 57

Query: 60 VAPAPVYVEEAP-CRMVRERFWDGYG--WRFRRIQVCD 94
           APAPVYVEE P CRMVRER+WD Y   WR R I+VCD
Sbjct: 58 GAPAPVYVEEPPPCRMVRERYWDDYRGVWRSRPIEVCD 95


>ref|YP_004108098.1| hypothetical protein Rpdx1_1748 [Rhodopseudomonas palustris DX-1]
 gb|ADU43365.1| hypothetical protein Rpdx1_1748 [Rhodopseudomonas palustris DX-1]
          Length = 94

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 77/97 (79%), Gaps = 6/97 (6%)

Query: 1  MKKTLAALVAVTTIAGSL-AVAPAAKAGDGGAVAAGVAGGLIGGALLGGAIAGARPAPVY 59
          MKKT+  L+A  TIAGSL AVAPAAKA DGG +AAGVAGGLIGGALLGGAIA +RPA  Y
Sbjct: 1  MKKTVTVLIAAATIAGSLVAVAPAAKA-DGGRIAAGVAGGLIGGALLGGAIAASRPA--Y 57

Query: 60 VAPAPVYVEEAPCRMVRERFWDGYG--WRFRRIQVCD 94
           APAPVYVEE  CR  RERFWD Y   WR RR++VCD
Sbjct: 58 AAPAPVYVEEPDCRWARERFWDDYAGVWRSRRVRVCD 94


>ref|YP_570572.1| hypothetical protein RPD_3448 [Rhodopseudomonas palustris BisB5]
 gb|ABE40671.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 94

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 77/97 (79%), Gaps = 6/97 (6%)

Query: 1  MKKTLAALVAVTTIAGSLAVA-PAAKAGDGGAVAAGVAGGLIGGALLGGAIAGARPAPVY 59
          MKKT++ L+AV TIAGSL  A P AKA DGG +AAGVAGGLIGGALLGGAIA +RPA  Y
Sbjct: 1  MKKTVSVLLAVATIAGSLVTAVPGAKA-DGGRIAAGVAGGLIGGALLGGAIAASRPA--Y 57

Query: 60 VAPAPVYVEEAPCRMVRERFWDGYG--WRFRRIQVCD 94
           APAPVYVEE  CR+VRERFWD Y   WR R +QVCD
Sbjct: 58 AAPAPVYVEEPECRVVRERFWDDYRGVWRTRPVQVCD 94