BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0146.0045.p (275 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002502744.1| dihydrodipicolinate synthetase [Methylobacte... 337 8e-91 ref|YP_002500786.1| dihydrodipicolinate synthetase [Methylobacte... 335 4e-90 ref|YP_003066376.1| dihydrodipicolinate synthase [Methylobacteri... 304 1e-80 ref|YP_001638179.1| dihydrodipicolinate synthetase [Methylobacte... 303 2e-80 ref|YP_002419556.1| dihydrodipicolinate synthetase [Methylobacte... 301 5e-80 >ref|YP_002502744.1| dihydrodipicolinate synthetase [Methylobacterium nodulans ORS 2060] gb|ACL63305.1| dihydrodipicolinate synthetase [Methylobacterium nodulans ORS 2060] Length = 297 Score = 337 bits (865), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 166/263 (63%), Positives = 194/263 (73%) Query: 12 IAAKVDSVGLLGSTGSYPYFSRDERRRAVEAATALADGNTPILVGIGALRTDDAVRLAQD 71 + A VDS+GLLGSTGSYPYFSR ERRRA+EAA G PI+VG+GALRT DAVRLAQD Sbjct: 34 VEAGVDSIGLLGSTGSYPYFSRTERRRALEAAVDETQGRIPIMVGVGALRTSDAVRLAQD 93 Query: 72 ARDAGATAGLLAAVSYTPLTDDEVFEHFQTVARESGLPICIYDNPGTTHFQFTPALIGRL 131 A+ GA AGLLA V YTPL DDEV+EHF TVARES LP+CIYDNP TTHFQF+ L+ L Sbjct: 94 AQAIGAVAGLLAPVCYTPLNDDEVYEHFITVARESQLPLCIYDNPTTTHFQFSRDLVSAL 153 Query: 132 GRVDGIVAVKSPALDASTVAGHLRELRAVVPDGVALGYSADWNCTEALLAGADTWYSVVA 191 RV ++AVKSPA +A H RELRA VP G ++GYS D N EALLAG D WY V Sbjct: 154 SRVPEVIAVKSPAPEAHLAQVHHRELRAAVPPGFSIGYSGDGNSVEALLAGGDAWYCVAG 213 Query: 192 GIFPKVCVDIVRAATSGDAARARELNARLQPIWDLFRTYSSLRVVYALANLRGVCTAEPP 251 G+FP+ C+ IVR A AR LNA LQP+WDLF+ YSSLRV+YA ANL G+C A+PP Sbjct: 214 GLFPETCMTIVRLIQGRRADEARRLNAALQPLWDLFKEYSSLRVMYAAANLLGICRAQPP 273 Query: 252 RPILPLPADAQMRVKETLAAIEI 274 RPILP+P + R+ ETL +E+ Sbjct: 274 RPILPVPDQVRQRIGETLTRLEL 296 >ref|YP_002500786.1| dihydrodipicolinate synthetase [Methylobacterium nodulans ORS 2060] gb|ACL60483.1| dihydrodipicolinate synthetase [Methylobacterium nodulans ORS 2060] Length = 297 Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 171/259 (66%), Positives = 200/259 (77%) Query: 16 VDSVGLLGSTGSYPYFSRDERRRAVEAATALADGNTPILVGIGALRTDDAVRLAQDARDA 75 VDS+GLLGSTGSYPY SR ER RA+EAA PILVG+GALRTD+AVRLAQDAR Sbjct: 38 VDSIGLLGSTGSYPYLSRAERCRALEAAVDEVGEEIPILVGVGALRTDEAVRLAQDARAV 97 Query: 76 GATAGLLAAVSYTPLTDDEVFEHFQTVARESGLPICIYDNPGTTHFQFTPALIGRLGRVD 135 GA AGLLA VSYTPLTDDEVFEHF TVARES LP+CIYDNP TTHF F P L+GR+ + Sbjct: 98 GAAAGLLAPVSYTPLTDDEVFEHFATVARESRLPLCIYDNPSTTHFTFNPVLVGRISHLP 157 Query: 136 GIVAVKSPALDASTVAGHLRELRAVVPDGVALGYSADWNCTEALLAGADTWYSVVAGIFP 195 G+VAVKSPA ++AGHL LRAVVPDG +LGYS DWN EALLAGAD WY V AG+FP Sbjct: 158 GVVAVKSPAPAPQSIAGHLGALRAVVPDGFSLGYSGDWNSVEALLAGADAWYCVAAGLFP 217 Query: 196 KVCVDIVRAATSGDAARARELNARLQPIWDLFRTYSSLRVVYALANLRGVCTAEPPRPIL 255 + C+ IV A A AR LNA LQP+WDLF+ +SSLRV+YA A++ G+C+A+PPRPIL Sbjct: 218 ETCMAIVEAVQGQRADEARRLNANLQPLWDLFKEFSSLRVMYAAADVLGICSAQPPRPIL 277 Query: 256 PLPADAQMRVKETLAAIEI 274 PL A+ +V ETL ++ + Sbjct: 278 PLLEPARRKVAETLISMSL 296 >ref|YP_003066376.1| dihydrodipicolinate synthase [Methylobacterium extorquens DM4] emb|CAX22323.1| putative dihydrodipicolinate synthase (dapA-like) [Methylobacterium extorquens DM4] Length = 297 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 177/268 (66%), Positives = 210/268 (78%) Query: 2 GALRALLDPLIAAKVDSVGLLGSTGSYPYFSRDERRRAVEAATALADGNTPILVGIGALR 61 GALRAL+ PL AA VDS+GLLGSTG+Y Y SR ERRRA++AA A G P++VGIGALR Sbjct: 24 GALRALIAPLAAAGVDSIGLLGSTGTYAYLSRAERRRALDAALEEAGGRVPVIVGIGALR 83 Query: 62 TDDAVRLAQDARDAGATAGLLAAVSYTPLTDDEVFEHFQTVARESGLPICIYDNPGTTHF 121 TD+AV LAQDAR AGA AGLLAA+SYTPLTD+EVFEHF VA SGLPICIYDNPGTTHF Sbjct: 84 TDEAVALAQDARAAGAAAGLLAAISYTPLTDEEVFEHFSAVATGSGLPICIYDNPGTTHF 143 Query: 122 QFTPALIGRLGRVDGIVAVKSPALDASTVAGHLRELRAVVPDGVALGYSADWNCTEALLA 181 +FTP+L+GRL +V GI A+KSPA D+ VAG L LR VP LG+S DWN EA+L Sbjct: 144 RFTPSLVGRLAQVPGIRALKSPAPDSDAVAGQLDALRRAVPAEFRLGFSGDWNAAEAVLV 203 Query: 182 GADTWYSVVAGIFPKVCVDIVRAATSGDAARARELNARLQPIWDLFRTYSSLRVVYALAN 241 G + WYSV AG+FP+ CV I+RAA +G+AARAR LNAR+QP+WDLF+ +SSLRV YA A+ Sbjct: 204 GGEAWYSVAAGLFPEPCVAILRAARAGEAARARALNARMQPLWDLFKEFSSLRVTYAAAH 263 Query: 242 LRGVCTAEPPRPILPLPADAQMRVKETL 269 G+C A+PPRPILPL + RV E + Sbjct: 264 HLGLCRADPPRPILPLSEPVRNRVAEVV 291 >ref|YP_001638179.1| dihydrodipicolinate synthetase [Methylobacterium extorquens PA1] gb|ABY29108.1| dihydrodipicolinate synthetase [Methylobacterium extorquens PA1] Length = 297 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 175/267 (65%), Positives = 209/267 (78%) Query: 3 ALRALLDPLIAAKVDSVGLLGSTGSYPYFSRDERRRAVEAATALADGNTPILVGIGALRT 62 ALR L+ PL AA VDS+GLLGSTG+Y Y SR ERRRA++AA A G P++VGIGALRT Sbjct: 25 ALRTLIAPLAAAGVDSIGLLGSTGTYAYLSRTERRRALDAALEEAGGRVPVIVGIGALRT 84 Query: 63 DDAVRLAQDARDAGATAGLLAAVSYTPLTDDEVFEHFQTVARESGLPICIYDNPGTTHFQ 122 D+AV LAQDAR AGA AGLLAA+SYTPLTD+EVFEHF +A SGLPICIYDNPGTTHF+ Sbjct: 85 DEAVALAQDARAAGAAAGLLAAISYTPLTDEEVFEHFSAIATGSGLPICIYDNPGTTHFR 144 Query: 123 FTPALIGRLGRVDGIVAVKSPALDASTVAGHLRELRAVVPDGVALGYSADWNCTEALLAG 182 FTP+L+GRL +V GI A+KSPA D+ VAG L LR VP LG+S DWN EA+LAG Sbjct: 145 FTPSLVGRLAQVPGIRALKSPAPDSDAVAGQLDALRRAVPAEFRLGFSGDWNAAEAVLAG 204 Query: 183 ADTWYSVVAGIFPKVCVDIVRAATSGDAARARELNARLQPIWDLFRTYSSLRVVYALANL 242 + WYSV AG+FP+ C+ I+RAA +G+AARAR LNAR+QP+WDLF+ +SSLRV YA AN Sbjct: 205 GEAWYSVAAGLFPEPCLAILRAARAGEAARARALNARMQPLWDLFKEFSSLRVTYAAANH 264 Query: 243 RGVCTAEPPRPILPLPADAQMRVKETL 269 G+C A+PPRPILPL + RV E + Sbjct: 265 LGLCRADPPRPILPLSEPVRKRVAEVV 291 >ref|YP_002419556.1| dihydrodipicolinate synthetase [Methylobacterium chloromethanicum CM4] gb|ACK81628.1| dihydrodipicolinate synthetase [Methylobacterium chloromethanicum CM4] Length = 297 Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 177/267 (66%), Positives = 209/267 (78%) Query: 3 ALRALLDPLIAAKVDSVGLLGSTGSYPYFSRDERRRAVEAATALADGNTPILVGIGALRT 62 ALRAL+ PL AA VDS+GLLGSTG+Y Y SR ERRRA++ A A G P++VGIGALRT Sbjct: 25 ALRALIAPLAAAGVDSIGLLGSTGTYAYLSRAERRRALDVALEEAGGRVPVIVGIGALRT 84 Query: 63 DDAVRLAQDARDAGATAGLLAAVSYTPLTDDEVFEHFQTVARESGLPICIYDNPGTTHFQ 122 D+AV LAQDAR AGA AGLLAAVSYTPLTD+EVFEHF VA SGLPICIYDNPGTTHF+ Sbjct: 85 DEAVALAQDARAAGAAAGLLAAVSYTPLTDEEVFEHFSAVATGSGLPICIYDNPGTTHFR 144 Query: 123 FTPALIGRLGRVDGIVAVKSPALDASTVAGHLRELRAVVPDGVALGYSADWNCTEALLAG 182 FTP+L+GRL +V GI A+KSPA D+ VAG L LR VP LG+S DWN EA+LAG Sbjct: 145 FTPSLVGRLAQVPGIRALKSPAPDSDAVAGQLDALRRAVPAEFRLGFSGDWNAAEAVLAG 204 Query: 183 ADTWYSVVAGIFPKVCVDIVRAATSGDAARARELNARLQPIWDLFRTYSSLRVVYALANL 242 + WYSV AG+FP+ C+ I+RAA +G+AARAR LNAR+QP+WDLFR +SSLRV YA A+ Sbjct: 205 GEAWYSVAAGLFPEPCLAILRAARAGEAARARALNARMQPLWDLFREFSSLRVTYAAAHH 264 Query: 243 RGVCTAEPPRPILPLPADAQMRVKETL 269 G+C A+PPRPILPL + RV E + Sbjct: 265 LGLCRADPPRPILPLSEPVRNRVAEVV 291