BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0146.0039.p (219 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001991771.1| single-stranded-DNA-specific exonuclease Rec... 381 e-104 ref|YP_004109322.1| single-stranded-DNA-specific exonuclease Rec... 380 e-104 ref|NP_947850.1| single-stranded-DNA-specific exonuclease RecJ [... 380 e-104 ref|YP_532680.1| single-stranded-DNA-specific exonuclease RecJ [... 379 e-103 ref|YP_569630.1| single-stranded-DNA-specific exonuclease RecJ [... 378 e-103 >ref|YP_001991771.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris TIE-1] gb|ACF01296.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris TIE-1] Length = 613 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/219 (84%), Positives = 205/219 (93%) Query: 1 VVGLVAARLKEKFARPAFAIALEPGGIGTGSGRSIGGVDLGKAVRQAVHDGLLMKGGGHA 60 VVGLVA+RLKEKF RP+FAIALEPGGIGTGSGRSI GVDLGKAVRQAVHDGLL+KGGGHA Sbjct: 395 VVGLVASRLKEKFGRPSFAIALEPGGIGTGSGRSISGVDLGKAVRQAVHDGLLLKGGGHA 454 Query: 61 MAAGVTLRKEKLAEFRAFMESALADDVANSRHENELFIDGAVTARAVTPEFAATLNRAGP 120 MAAGVTLRKE+LAEFRA++E+ LA DVA SRH NEL+IDGAV+AR VT E AATLNRAGP Sbjct: 455 MAAGVTLRKERLAEFRAWLETTLAGDVAKSRHVNELYIDGAVSARGVTTELAATLNRAGP 514 Query: 121 FGAANPEPVIALPSHQLVYADEVGQAHLRLRFKSGDGSIVNGIAFRSVGQKLGSALTQNR 180 FGA NPEP++ALP+HQL+YADEVGQAHLRLRFK+GDG+IVNGIAFRSVGQKLG+ALT+NR Sbjct: 515 FGAGNPEPIVALPAHQLIYADEVGQAHLRLRFKAGDGAIVNGIAFRSVGQKLGNALTENR 574 Query: 181 GQQLHVAGSLAVDRWQGTERVQFRVLDVAVPDQGPTVIR 219 GQ LHVAGSL+VDRWQG ERVQ RV+DVAVPD GPT+IR Sbjct: 575 GQTLHVAGSLSVDRWQGAERVQLRVIDVAVPDAGPTMIR 613 >ref|YP_004109322.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris DX-1] gb|ADU44589.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris DX-1] Length = 613 Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/219 (83%), Positives = 204/219 (93%) Query: 1 VVGLVAARLKEKFARPAFAIALEPGGIGTGSGRSIGGVDLGKAVRQAVHDGLLMKGGGHA 60 VVGLVA+RLKEKF RP+FAIALEPGGIGTGSGRSI GVDLGKAVRQAVHDGLL+KGGGHA Sbjct: 395 VVGLVASRLKEKFGRPSFAIALEPGGIGTGSGRSISGVDLGKAVRQAVHDGLLLKGGGHA 454 Query: 61 MAAGVTLRKEKLAEFRAFMESALADDVANSRHENELFIDGAVTARAVTPEFAATLNRAGP 120 MAAGVTLRKE+LAEFRA++E+ LA DVA SRH NEL++DGAV+AR VTPE AATLNRAGP Sbjct: 455 MAAGVTLRKERLAEFRAWLETTLASDVAKSRHVNELYVDGAVSARGVTPELAATLNRAGP 514 Query: 121 FGAANPEPVIALPSHQLVYADEVGQAHLRLRFKSGDGSIVNGIAFRSVGQKLGSALTQNR 180 FGA NPEP++ALP+HQLVYADEVGQ+HLRLRFK+GDG+IVNGIAFRSVGQKLG+AL +NR Sbjct: 515 FGAGNPEPIVALPAHQLVYADEVGQSHLRLRFKAGDGAIVNGIAFRSVGQKLGNALAENR 574 Query: 181 GQQLHVAGSLAVDRWQGTERVQFRVLDVAVPDQGPTVIR 219 GQ LHVAG L+VDRWQG ERVQ RV+DVAVPD GPT+IR Sbjct: 575 GQTLHVAGCLSVDRWQGAERVQLRVIDVAVPDAGPTMIR 613 >ref|NP_947850.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris CGA009] emb|CAE27949.1| putative single-strand DNA-specific exonuclease [Rhodopseudomonas palustris CGA009] Length = 645 Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/219 (84%), Positives = 205/219 (93%) Query: 1 VVGLVAARLKEKFARPAFAIALEPGGIGTGSGRSIGGVDLGKAVRQAVHDGLLMKGGGHA 60 VVGLVA+RLKEKF RP+FAIALEPGGIGTGSGRSI GVDLGKAVRQAVHDGLL+KGGGHA Sbjct: 427 VVGLVASRLKEKFGRPSFAIALEPGGIGTGSGRSISGVDLGKAVRQAVHDGLLLKGGGHA 486 Query: 61 MAAGVTLRKEKLAEFRAFMESALADDVANSRHENELFIDGAVTARAVTPEFAATLNRAGP 120 MAAGVTLRKE+LAEFRA++E+ LA DVA SRH NEL+IDGAV+AR VT + AATLNRAGP Sbjct: 487 MAAGVTLRKERLAEFRAWLETTLAGDVAKSRHVNELYIDGAVSARGVTTDLAATLNRAGP 546 Query: 121 FGAANPEPVIALPSHQLVYADEVGQAHLRLRFKSGDGSIVNGIAFRSVGQKLGSALTQNR 180 FGA NPEP++ALP+HQL+YADEVGQAHLRLRFK+GDG+IVNGIAFRSVGQKLG+ALT+NR Sbjct: 547 FGAGNPEPIVALPAHQLIYADEVGQAHLRLRFKAGDGAIVNGIAFRSVGQKLGNALTENR 606 Query: 181 GQQLHVAGSLAVDRWQGTERVQFRVLDVAVPDQGPTVIR 219 GQ LHVAGSL+VDRWQG ERVQ RV+DVAVPD GPT+IR Sbjct: 607 GQTLHVAGSLSVDRWQGAERVQLRVIDVAVPDAGPTMIR 645 >ref|YP_532680.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris BisB18] gb|ABD88361.1| exonuclease RecJ [Rhodopseudomonas palustris BisB18] Length = 613 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 189/219 (86%), Positives = 202/219 (92%) Query: 1 VVGLVAARLKEKFARPAFAIALEPGGIGTGSGRSIGGVDLGKAVRQAVHDGLLMKGGGHA 60 VVGLVA+RLKEKF+RPAFAIALEPGGIGTGSGRSI GVDLGKAVRQAV DGLL+KGGGHA Sbjct: 395 VVGLVASRLKEKFSRPAFAIALEPGGIGTGSGRSIPGVDLGKAVRQAVSDGLLLKGGGHA 454 Query: 61 MAAGVTLRKEKLAEFRAFMESALADDVANSRHENELFIDGAVTARAVTPEFAATLNRAGP 120 MAAGVTLRKEKLAEFRA++E+ALA DVA SRH NELFIDGAV+ARAVTP+ ATLNRAGP Sbjct: 455 MAAGVTLRKEKLAEFRAYIEAALAADVARSRHANELFIDGAVSARAVTPDLVATLNRAGP 514 Query: 121 FGAANPEPVIALPSHQLVYADEVGQAHLRLRFKSGDGSIVNGIAFRSVGQKLGSALTQNR 180 FG+ NPEPV+ALPSHQLVYADEVGQAHLRLRFKSGDG+IVNGIAFRSVGQKLG+AL +NR Sbjct: 515 FGSGNPEPVLALPSHQLVYADEVGQAHLRLRFKSGDGAIVNGIAFRSVGQKLGNALQENR 574 Query: 181 GQQLHVAGSLAVDRWQGTERVQFRVLDVAVPDQGPTVIR 219 GQ LHVAG L VDRWQG ERVQ RV DVAVPD GP VIR Sbjct: 575 GQPLHVAGCLTVDRWQGNERVQLRVTDVAVPDPGPAVIR 613 >ref|YP_569630.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris BisB5] gb|ABE39729.1| exonuclease RecJ [Rhodopseudomonas palustris BisB5] Length = 633 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/219 (84%), Positives = 203/219 (92%) Query: 1 VVGLVAARLKEKFARPAFAIALEPGGIGTGSGRSIGGVDLGKAVRQAVHDGLLMKGGGHA 60 VVGLVA+RLKEKF RPAFAIALEPGGIGTGSGRSIGGVDLG+AVR+AV +GLLMKGGGHA Sbjct: 415 VVGLVASRLKEKFGRPAFAIALEPGGIGTGSGRSIGGVDLGRAVRRAVSEGLLMKGGGHA 474 Query: 61 MAAGVTLRKEKLAEFRAFMESALADDVANSRHENELFIDGAVTARAVTPEFAATLNRAGP 120 MAAGVTLRKE+LAEFR ++E+ALA DVA SRH NEL IDGAV+AR VT EFAATLNRAGP Sbjct: 475 MAAGVTLRKERLAEFRGWLETALAADVAKSRHINELLIDGAVSARGVTTEFAATLNRAGP 534 Query: 121 FGAANPEPVIALPSHQLVYADEVGQAHLRLRFKSGDGSIVNGIAFRSVGQKLGSALTQNR 180 FGA NPEPVIALP+HQL+YADEVGQAHLRLRFKSGDG+IVNGIAFRSVGQKLG ALT+NR Sbjct: 535 FGAGNPEPVIALPAHQLIYADEVGQAHLRLRFKSGDGAIVNGIAFRSVGQKLGQALTENR 594 Query: 181 GQQLHVAGSLAVDRWQGTERVQFRVLDVAVPDQGPTVIR 219 GQ LHVAGSL++DRWQG ERVQ RV+DVAVPD GP +IR Sbjct: 595 GQSLHVAGSLSIDRWQGAERVQLRVIDVAVPDPGPAMIR 633