BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0146.0038.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771017.1| single-stranded-DNA-specific exonuclease [Brady... 561 e-158 ref|YP_001205582.1| putative single-stranded-DNA-specific exonuc... 558 e-157 ref|YP_318258.1| RecJ exonuclease [Nitrobacter winogradskyi Nb-2... 558 e-157 ref|YP_001239974.1| exonuclease RecJ [Bradyrhizobium sp. BTAi1] ... 558 e-157 ref|YP_486575.1| single-stranded-DNA-specific exonuclease RecJ [... 556 e-156 >ref|NP_771017.1| single-stranded-DNA-specific exonuclease [Bradyrhizobium japonicum USDA 110] dbj|BAC49642.1| single-stranded-DNA-specific exonuclease [Bradyrhizobium japonicum USDA 110] Length = 633 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 289/323 (89%), Positives = 300/323 (92%) Query: 1 MTLHASALPVEAPQAFLGVTRSLTGKLWRDRLDARGAARALAIVQRHNLPEMLARVLAGR 60 MT +ALPVEAPQAFLGVTRSLT KLWRDRLDARGAA+ALAIVQRH LPE+LARVLAGR Sbjct: 21 MTPPTTALPVEAPQAFLGVTRSLTDKLWRDRLDARGAAQALAIVQRHQLPELLARVLAGR 80 Query: 61 DVAIDEVADFLDPTIRKLMPDPHTVTEMEHAARRIADAAVRGEKVAIFGDYDVDGATSAA 120 V ID V DFLDPTIRKLMPDP TVTEME AA+RIADAA +GEKVAIFGDYDVDGATSAA Sbjct: 81 GVDIDAVPDFLDPTIRKLMPDPFTVTEMEAAAKRIADAAAKGEKVAIFGDYDVDGATSAA 140 Query: 121 LLTWHLRHCGLDPLIHIPDRIFEGYGPNVDAVRSLAAKGATLLVTVDCGTTSIEPLAEAR 180 LL WHLRHCGLDPLIHIPDRIFEGYGPN +AVR LAAKGATLLVTVDCGTTSIEPLAEA+ Sbjct: 141 LLAWHLRHCGLDPLIHIPDRIFEGYGPNTEAVRGLAAKGATLLVTVDCGTTSIEPLAEAK 200 Query: 181 KLGMSVVVIDHHQTGDVLPEVDALVNPNRPDDISGLGHLAAVGLVLVTLVAVNRELRQRG 240 +LGMSVVVIDHHQ G LP VDALVNPNR DD+SGLGHLAAVGLVLVTLVAVNRELRQRG Sbjct: 201 RLGMSVVVIDHHQAGTELPLVDALVNPNRLDDLSGLGHLAAVGLVLVTLVAVNRELRQRG 260 Query: 241 FWTGEMPEPDLLSVLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVAR 300 FW EMPEPDLL +LHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVAR Sbjct: 261 FWNAEMPEPDLLGMLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVAR 320 Query: 301 LNGPPEAWHLGFMLGPRINAGGR 323 LNGPPEAWHLGFMLGPR+NAGGR Sbjct: 321 LNGPPEAWHLGFMLGPRVNAGGR 343 >ref|YP_001205582.1| putative single-stranded-DNA-specific exonuclease recJ [Bradyrhizobium sp. ORS 278] emb|CAL77356.1| putative single-stranded-DNA-specific exonuclease recJ [Bradyrhizobium sp. ORS 278] Length = 613 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 283/323 (87%), Positives = 299/323 (92%) Query: 1 MTLHASALPVEAPQAFLGVTRSLTGKLWRDRLDARGAARALAIVQRHNLPEMLARVLAGR 60 M L A+ALP APQAFLGV SLT KLWRDRLD RGAARALAIVQR+ LPEMLARVLAGR Sbjct: 1 MMLSAAALPTSAPQAFLGVRLSLTNKLWRDRLDTRGAARALAIVQRYQLPEMLARVLAGR 60 Query: 61 DVAIDEVADFLDPTIRKLMPDPHTVTEMEHAARRIADAAVRGEKVAIFGDYDVDGATSAA 120 DVA+D V DFLDPTIRKLMPDP TVT+ME AA+RIADAAV+GEKVAIFGDYDVDGATSAA Sbjct: 61 DVALDAVQDFLDPTIRKLMPDPFTVTQMEAAAQRIADAAVKGEKVAIFGDYDVDGATSAA 120 Query: 121 LLTWHLRHCGLDPLIHIPDRIFEGYGPNVDAVRSLAAKGATLLVTVDCGTTSIEPLAEAR 180 LL WHLRHCGLDPLIHIPDRIFEGYGPN DA+R+LA KGATLLVTVDCGTTS+EPLAEAR Sbjct: 121 LLAWHLRHCGLDPLIHIPDRIFEGYGPNTDAIRALANKGATLLVTVDCGTTSLEPLAEAR 180 Query: 181 KLGMSVVVIDHHQTGDVLPEVDALVNPNRPDDISGLGHLAAVGLVLVTLVAVNRELRQRG 240 +LGMSVVVIDHHQ G+ LPEV+ALVNPNRPDD+SGLG+LAAVGL VTLVAVNRELR RG Sbjct: 181 RLGMSVVVIDHHQCGEELPEVEALVNPNRPDDLSGLGYLAAVGLTFVTLVAVNRELRSRG 240 Query: 241 FWTGEMPEPDLLSVLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVAR 300 FW+G PEPDLLS+LHHVALGTVADVAPLI LNRAFVAKGLIAMRRRDHVGHTALMDVAR Sbjct: 241 FWSGTRPEPDLLSMLHHVALGTVADVAPLIALNRAFVAKGLIAMRRRDHVGHTALMDVAR 300 Query: 301 LNGPPEAWHLGFMLGPRINAGGR 323 LNGPPEAWHLGFMLGPRINAGGR Sbjct: 301 LNGPPEAWHLGFMLGPRINAGGR 323 >ref|YP_318258.1| RecJ exonuclease [Nitrobacter winogradskyi Nb-255] gb|ABA04906.1| exonuclease RecJ [Nitrobacter winogradskyi Nb-255] Length = 613 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 278/323 (86%), Positives = 297/323 (91%) Query: 1 MTLHASALPVEAPQAFLGVTRSLTGKLWRDRLDARGAARALAIVQRHNLPEMLARVLAGR 60 MTL ASALPVEAP AFLGV+ S TG+LWRDRLD RGAARALAI QRH LPEMLARV+AGR Sbjct: 1 MTLPASALPVEAPDAFLGVSHSATGRLWRDRLDPRGAARALAIAQRHQLPEMLARVIAGR 60 Query: 61 DVAIDEVADFLDPTIRKLMPDPHTVTEMEHAARRIADAAVRGEKVAIFGDYDVDGATSAA 120 V ID V DFLDPTIR+LMPDP TVT+ME AA+RIADAA+RGE VAIFGDYDVDGATSAA Sbjct: 61 GVDIDAVTDFLDPTIRRLMPDPFTVTQMETAAQRIADAAMRGETVAIFGDYDVDGATSAA 120 Query: 121 LLTWHLRHCGLDPLIHIPDRIFEGYGPNVDAVRSLAAKGATLLVTVDCGTTSIEPLAEAR 180 LL WHLRHCGLDPLIHIPDRIFEGYGPNVDAV +LA +GATLLVTVDCGTTSIEPLA AR Sbjct: 121 LLAWHLRHCGLDPLIHIPDRIFEGYGPNVDAVDALAGRGATLLVTVDCGTTSIEPLAVAR 180 Query: 181 KLGMSVVVIDHHQTGDVLPEVDALVNPNRPDDISGLGHLAAVGLVLVTLVAVNRELRQRG 240 + GMSVVVIDHHQ GD LPEV+ALVNPNRPDD+SGLGHLAAVGLV +TLVA+NRELRQRG Sbjct: 181 QRGMSVVVIDHHQCGDDLPEVEALVNPNRPDDLSGLGHLAAVGLVFITLVALNRELRQRG 240 Query: 241 FWTGEMPEPDLLSVLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVAR 300 FW+ E PEP+LL +LHHVALGTVADVAPL GLNRAFVAKGLIA+RRRDHVGHTALMDVAR Sbjct: 241 FWSRERPEPNLLDMLHHVALGTVADVAPLTGLNRAFVAKGLIALRRRDHVGHTALMDVAR 300 Query: 301 LNGPPEAWHLGFMLGPRINAGGR 323 L+GPPEAWHLGFMLGPRINAGGR Sbjct: 301 LSGPPEAWHLGFMLGPRINAGGR 323 >ref|YP_001239974.1| exonuclease RecJ [Bradyrhizobium sp. BTAi1] gb|ABQ36068.1| exonuclease RecJ [Bradyrhizobium sp. BTAi1] Length = 613 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 291/346 (84%), Positives = 311/346 (89%) Query: 1 MTLHASALPVEAPQAFLGVTRSLTGKLWRDRLDARGAARALAIVQRHNLPEMLARVLAGR 60 MT A+ALP+ APQAFLGV SLT KLWRDRLDARGAARALA+VQR+ LPEMLARVLAGR Sbjct: 1 MTPLATALPMSAPQAFLGVRLSLTNKLWRDRLDARGAARALAMVQRYQLPEMLARVLAGR 60 Query: 61 DVAIDEVADFLDPTIRKLMPDPHTVTEMEHAARRIADAAVRGEKVAIFGDYDVDGATSAA 120 DV ID V DFLDPTIRKLMPDP TVT+ME AA+RIADAAVRGEKVAIFGDYDVDGATSAA Sbjct: 61 DVDIDAVNDFLDPTIRKLMPDPFTVTQMEAAAKRIADAAVRGEKVAIFGDYDVDGATSAA 120 Query: 121 LLTWHLRHCGLDPLIHIPDRIFEGYGPNVDAVRSLAAKGATLLVTVDCGTTSIEPLAEAR 180 LL WHLRHCGLDPLIHIPDRIFEGYGPNV+A+R+LA KGATLLVTVDCGTTS+EPLAEAR Sbjct: 121 LLAWHLRHCGLDPLIHIPDRIFEGYGPNVEAIRALAGKGATLLVTVDCGTTSLEPLAEAR 180 Query: 181 KLGMSVVVIDHHQTGDVLPEVDALVNPNRPDDISGLGHLAAVGLVLVTLVAVNRELRQRG 240 +LGMSVVVIDHHQ G+ LPEV+ALVNPNRPDD+SGLG+LAAVGL LVTLVAVNRELR RG Sbjct: 181 RLGMSVVVIDHHQCGEELPEVEALVNPNRPDDLSGLGYLAAVGLTLVTLVAVNRELRGRG 240 Query: 241 FWTGEMPEPDLLSVLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVAR 300 FW+G PEPDLLS+LHHVALGTVADVAPLI LNRAFVAKGLIAMRRRDHVGHTALMDVAR Sbjct: 241 FWSGTRPEPDLLSMLHHVALGTVADVAPLIALNRAFVAKGLIAMRRRDHVGHTALMDVAR 300 Query: 301 LNGPPEAWHLGFMLGPRINAGGRPLRSGSRTRALSSSPRRKAGILA 346 LNGPPEAWHLGFMLGPRINAGGR R+ R L S +A +A Sbjct: 301 LNGPPEAWHLGFMLGPRINAGGRIGRADLGVRLLLESDVSEAARIA 346 >ref|YP_486575.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris HaA2] gb|ABD07664.1| exonuclease RecJ [Rhodopseudomonas palustris HaA2] Length = 613 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 276/323 (85%), Positives = 294/323 (91%) Query: 1 MTLHASALPVEAPQAFLGVTRSLTGKLWRDRLDARGAARALAIVQRHNLPEMLARVLAGR 60 MTL ASALP + AFLGVTRS TGKLWRDRLDARG A+A AI QR+ LPEMLARV+AGR Sbjct: 1 MTLPASALPPDPVSAFLGVTRSATGKLWRDRLDARGTAKAQAIAQRYQLPEMLARVIAGR 60 Query: 61 DVAIDEVADFLDPTIRKLMPDPHTVTEMEHAARRIADAAVRGEKVAIFGDYDVDGATSAA 120 + ID VADFLDPTIRKLMPDP TVT+ME A RIADAA + EKVAIFGDYDVDGATSAA Sbjct: 61 GIEIDAVADFLDPTIRKLMPDPSTVTQMEAGASRIADAATKREKVAIFGDYDVDGATSAA 120 Query: 121 LLTWHLRHCGLDPLIHIPDRIFEGYGPNVDAVRSLAAKGATLLVTVDCGTTSIEPLAEAR 180 LL WHLRHCGLDPLIHIPDRIFEGYGPNVDA+R LA KGATLL+TVDCGTTS+EPLAEAR Sbjct: 121 LLAWHLRHCGLDPLIHIPDRIFEGYGPNVDAIRMLADKGATLLITVDCGTTSLEPLAEAR 180 Query: 181 KLGMSVVVIDHHQTGDVLPEVDALVNPNRPDDISGLGHLAAVGLVLVTLVAVNRELRQRG 240 +LGMSVVVIDHHQT D LPEVDAL+NPNRPDD+SGLGHLAAVGLV++TLVAVNRELR RG Sbjct: 181 RLGMSVVVIDHHQTADELPEVDALINPNRPDDLSGLGHLAAVGLVMMTLVAVNRELRHRG 240 Query: 241 FWTGEMPEPDLLSVLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVAR 300 FWT E PEP+LL +LHHVALGTVADVAPLIGLNRAFVAKGLIA+RRRDHVGHTALMDVAR Sbjct: 241 FWTLERPEPNLLDMLHHVALGTVADVAPLIGLNRAFVAKGLIALRRRDHVGHTALMDVAR 300 Query: 301 LNGPPEAWHLGFMLGPRINAGGR 323 LNGPPE WHLGFMLGPRINAGGR Sbjct: 301 LNGPPEVWHLGFMLGPRINAGGR 323