BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0146.0037.p         (115 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004611798.1| AraC family transcriptional regulator [Mesor...   100   1e-19
ref|YP_487266.1| AraC family transcriptional regulator [Rhodopse...    96   2e-18
ref|YP_004142059.1| AraC type helix-turn-helix- domain containin...    92   2e-17
ref|YP_001207804.1| AraC/XylS family transcription factor [Brady...    77   7e-13
ref|YP_004140237.1| AraC type helix-turn-helix- domain containin...    65   2e-09

>ref|YP_004611798.1| AraC family transcriptional regulator [Mesorhizobium opportunistum
           WSM2075]
 gb|AEH87704.1| transcriptional regulator, AraC family [Mesorhizobium opportunistum
           WSM2075]
          Length = 339

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 71/99 (71%)

Query: 11  PLLQNHVGTTLLDLTALALGARGDAAQNATMRGLRASRTQEVIAEINRSFASAGFSVEQV 70
           P L  H   T++DL  L  GA+G  A+ A +RGLRA+R Q ++A+I  +FA  G S + V
Sbjct: 201 PDLIAHATETIVDLIGLVTGAKGQRAELAGLRGLRAARLQAIMAKIADNFADPGISAQGV 260

Query: 71  AKRMGVSARYVQDLLQDTGSSFTERLLERRLQHAMRLLT 109
           A+ +G+SARYV DLLQ+TG+SFTER+LE RLQ A ++L+
Sbjct: 261 AQELGLSARYVHDLLQETGTSFTERVLELRLQRAHKMLS 299


>ref|YP_487266.1| AraC family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gb|ABD08355.1| transcriptional regulator, AraC family [Rhodopseudomonas palustris
           HaA2]
          Length = 332

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 68/101 (67%)

Query: 10  DPLLQNHVGTTLLDLTALALGARGDAAQNATMRGLRASRTQEVIAEINRSFASAGFSVEQ 69
           DP +  HV + L+DL  LALG   D A+ + +RGLRA R   ++AEI   FA  GFS  +
Sbjct: 188 DPAMVAHVQSVLIDLLGLALGVGRDLAEASKLRGLRAVRFMTIVAEIGAGFADPGFSAAR 247

Query: 70  VAKRMGVSARYVQDLLQDTGSSFTERLLERRLQHAMRLLTS 110
           +A ++ +S+RY+QD+L ++G + TER+LE RLQ A RLL S
Sbjct: 248 LAAKLNLSSRYIQDILHESGVTLTERVLELRLQKARRLLAS 288


>ref|YP_004142059.1| AraC type helix-turn-helix- domain containing protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gb|ADV12009.1| helix-turn-helix- domain containing protein AraC type
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 319

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 68/99 (68%)

Query: 11  PLLQNHVGTTLLDLTALALGARGDAAQNATMRGLRASRTQEVIAEINRSFASAGFSVEQV 70
           P L  H   T++DL  LA GA+G+AA+ A +RGLRA+R Q ++ ++  +FA    S + V
Sbjct: 181 PDLIGHATETIVDLIGLATGAKGEAAELAGLRGLRAARLQAILQKMRDNFADPAISAQGV 240

Query: 71  AKRMGVSARYVQDLLQDTGSSFTERLLERRLQHAMRLLT 109
           A ++ +S RYV DLLQ+TG SF ER+LE RLQ A R+L+
Sbjct: 241 AGQLRLSVRYVHDLLQETGVSFAERILELRLQRAHRMLS 279


>ref|YP_001207804.1| AraC/XylS family transcription factor [Bradyrhizobium sp. ORS 278]
 emb|CAL79589.1| putative Transcriptional regulator, AraC/XylS family
           [Bradyrhizobium sp. ORS 278]
          Length = 319

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 56/92 (60%)

Query: 17  VGTTLLDLTALALGARGDAAQNATMRGLRASRTQEVIAEINRSFASAGFSVEQVAKRMGV 76
           V   LLDL AL LG RG+    A   GLR+ R   V+A +N  FA   FS +++A   G+
Sbjct: 188 VAQHLLDLVALGLGVRGEVMHKARRGGLRSVRLSGVLAILNERFAEPDFSAQKLATAAGL 247

Query: 77  SARYVQDLLQDTGSSFTERLLERRLQHAMRLL 108
           S RYV DLL + G+SF+ RL E RL+ AM LL
Sbjct: 248 SERYVNDLLYEAGASFSARLNELRLRRAMDLL 279


>ref|YP_004140237.1| AraC type helix-turn-helix- domain containing protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gb|ADV10187.1| helix-turn-helix- domain containing protein AraC type
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 323

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 64/102 (62%), Gaps = 5/102 (4%)

Query: 16  HVGTT-LLDLTALALGARGDAAQNATMRGLRASRTQEVIAEINRSFASAG-FSVEQVAKR 73
           H+ TT + DL ALA+GA  DAA+ A  RG+R +R + + AEI    A  G  S E +A+R
Sbjct: 185 HLATTHIFDLVALAMGATRDAAEIARGRGVRVARLRAIKAEIT---AHGGDLSAEDIARR 241

Query: 74  MGVSARYVQDLLQDTGSSFTERLLERRLQHAMRLLTSEQGTG 115
             +SARY++ L +  G+S ++ +L +RL  A R+L++ +  G
Sbjct: 242 HRLSARYIRKLFESEGTSLSDFMLCQRLLRAHRMLSNPRHAG 283