BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0146.0021.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_577568.1| hypothetical protein Nham_2316 [Nitrobacter ham...   177   4e-43
ref|YP_577230.1| hypothetical protein Nham_1968 [Nitrobacter ham...   176   1e-42
ref|YP_577250.1| hypothetical protein Nham_1991 [Nitrobacter ham...   176   1e-42
ref|ZP_01047274.1| DNA topoisomerase IV subunit B [Nitrobacter s...   115   2e-24
ref|ZP_01047862.1| hypothetical protein NB311A_00555 [Nitrobacte...    96   2e-18

>ref|YP_577568.1| hypothetical protein Nham_2316 [Nitrobacter hamburgensis X14]
 gb|ABE63108.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 122

 Score =  177 bits (450), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 105/122 (86%)

Query: 1   MIGSLMMCVSVLVLLFGMLAGIAMGIQHDFTLGPAHAHLNLVGGVLLFLFGLYYRLVPEA 60
           MIGSLMMCVSV++LL GM+AGIAMG+Q +F L PAHAHLNLVGGVLLFLFGLYYR++P A
Sbjct: 1   MIGSLMMCVSVVILLAGMIAGIAMGVQENFALAPAHAHLNLVGGVLLFLFGLYYRVIPAA 60

Query: 61  GSMLLARIQGWLHIVGGTLFPAGVAVVLLKGPSFEAAPIVGSLLVVVAMTLFTVVVFRTS 120
           G   LARIQGWLHI+G  LFPAG+A+VL+ G ++ AAPI+GSL++V AMTLF VVVFRT 
Sbjct: 61  GRTTLARIQGWLHILGSILFPAGIALVLVGGHAYIAAPIIGSLILVTAMTLFAVVVFRTR 120

Query: 121 RA 122
            A
Sbjct: 121 AA 122


>ref|YP_577230.1| hypothetical protein Nham_1968 [Nitrobacter hamburgensis X14]
 gb|ABE62770.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 122

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 103/122 (84%)

Query: 1   MIGSLMMCVSVLVLLFGMLAGIAMGIQHDFTLGPAHAHLNLVGGVLLFLFGLYYRLVPEA 60
           MIGSLMMCVSV++LL GM+AGI MGIQ +F L PAHAHLNLVGGVLLFLFGLYYR+ P A
Sbjct: 1   MIGSLMMCVSVVILLAGMIAGITMGIQQNFVLAPAHAHLNLVGGVLLFLFGLYYRVFPAA 60

Query: 61  GSMLLARIQGWLHIVGGTLFPAGVAVVLLKGPSFEAAPIVGSLLVVVAMTLFTVVVFRTS 120
           G M LARIQGWLHI+G  LFP G+A+VL+ G ++ AAPI+GSL+VV+AM LF VVVFRT 
Sbjct: 61  GRMTLARIQGWLHILGSILFPTGIALVLVGGKAYIAAPIIGSLVVVLAMALFVVVVFRTR 120

Query: 121 RA 122
            A
Sbjct: 121 TA 122


>ref|YP_577250.1| hypothetical protein Nham_1991 [Nitrobacter hamburgensis X14]
 gb|ABE62790.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 129

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 103/122 (84%)

Query: 1   MIGSLMMCVSVLVLLFGMLAGIAMGIQHDFTLGPAHAHLNLVGGVLLFLFGLYYRLVPEA 60
           MIGSLMMCVSV++LL GM+AGI MGIQ +F L PAHAHLNLVGGVLLFLFGLYYR+ P A
Sbjct: 1   MIGSLMMCVSVVILLAGMIAGITMGIQQNFVLAPAHAHLNLVGGVLLFLFGLYYRVFPAA 60

Query: 61  GSMLLARIQGWLHIVGGTLFPAGVAVVLLKGPSFEAAPIVGSLLVVVAMTLFTVVVFRTS 120
           G M LARIQGWLHI+G  LFP G+A+VL+ G ++ AAPI+GSL+VV+AM LF VVVFRT 
Sbjct: 61  GRMTLARIQGWLHILGSILFPTGIALVLVGGKAYIAAPIIGSLVVVLAMALFVVVVFRTR 120

Query: 121 RA 122
            A
Sbjct: 121 AA 122


>ref|ZP_01047274.1| DNA topoisomerase IV subunit B [Nitrobacter sp. Nb-311A]
 gb|EAQ34702.1| DNA topoisomerase IV subunit B [Nitrobacter sp. Nb-311A]
          Length = 98

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 67/78 (85%)

Query: 1  MIGSLMMCVSVLVLLFGMLAGIAMGIQHDFTLGPAHAHLNLVGGVLLFLFGLYYRLVPEA 60
          M+GSLMMCVSV++LL GM  G+AMGI+ +FTL PAHAHLNLVGGVLLFLFGL+YRLVP A
Sbjct: 1  MVGSLMMCVSVVLLLIGMTGGMAMGIEQNFTLAPAHAHLNLVGGVLLFLFGLFYRLVPSA 60

Query: 61 GSMLLARIQGWLHIVGGT 78
          G  +LARIQG LHI+  +
Sbjct: 61 GKSMLARIQGGLHILAAS 78


>ref|ZP_01047862.1| hypothetical protein NB311A_00555 [Nitrobacter sp. Nb-311A]
 gb|EAQ34170.1| hypothetical protein NB311A_00555 [Nitrobacter sp. Nb-311A]
          Length = 135

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 71/112 (63%)

Query: 10  SVLVLLFGMLAGIAMGIQHDFTLGPAHAHLNLVGGVLLFLFGLYYRLVPEAGSMLLARIQ 69
           +VL+++ G++ GIAMGI HD +  PAHAHLNL+G V LFLFG+YY L P      LA +Q
Sbjct: 11  AVLMVVCGIIWGIAMGISHDHSTFPAHAHLNLLGWVSLFLFGIYYHLHPAIDDNRLASLQ 70

Query: 70  GWLHIVGGTLFPAGVAVVLLKGPSFEAAPIVGSLLVVVAMTLFTVVVFRTSR 121
            W+ I    +   GVA+V L  PS E A  + SL+++  M LF  +VFR  +
Sbjct: 71  VWIWIAATVVLSIGVALVHLGRPSAEPAAAIASLVILADMLLFGWLVFRREK 122