BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0146.0019.p         (291 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770995.1| DNA topoisomerase IV subunit B [Bradyrhizobium ...   468   e-130
ref|YP_318266.1| DNA topoisomerase IV subunit B [Nitrobacter win...   426   e-117
ref|ZP_01047276.1| gram negative topoisomerase IV, subunit B [Ni...   424   e-117
ref|YP_532694.1| DNA topoisomerase IV subunit B [Rhodopseudomona...   421   e-116
ref|YP_577569.1| DNA topoisomerase IV subunit B [Nitrobacter ham...   420   e-115

>ref|NP_770995.1| DNA topoisomerase IV subunit B [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49620.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110]
          Length = 681

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/237 (94%), Positives = 232/237 (97%)

Query: 1   MKDPFDHWLSGNPNQANRLLDFVIDRAEERLRRRQEKETARKTAGKKLRLPGKLADCSDA 60
           MKDPFDHWLSGNPNQAN+LLDFVIDRAEERLRRRQEKETARKTAGKKLRLPGKLADCSDA
Sbjct: 396 MKDPFDHWLSGNPNQANKLLDFVIDRAEERLRRRQEKETARKTAGKKLRLPGKLADCSDA 455

Query: 61  GTEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTANAQLSDLVQA 120
           GTEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTANAQLSDLVQA
Sbjct: 456 GTEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTANAQLSDLVQA 515

Query: 121 IGCGTLAHYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAVPPL 180
           IGCGTLA YREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHL+LAVPPL
Sbjct: 516 IGCGTLAQYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLFLAVPPL 575

Query: 181 YKLKHGTKSIYARDDAHKDELLKSEFNANAKVEVNRFKGLGEMMPAQLKETTMDSGQ 237
           YKL HG+KS+YARDDAHK+ L+KSEFNANAKVEVNRFKGLGEMMPAQLKETTMD  +
Sbjct: 576 YKLTHGSKSVYARDDAHKEALIKSEFNANAKVEVNRFKGLGEMMPAQLKETTMDPAK 632


>ref|YP_318266.1| DNA topoisomerase IV subunit B [Nitrobacter winogradskyi Nb-255]
 gb|ABA04914.1| DNA topoisomerase IV subunit B [Nitrobacter winogradskyi Nb-255]
          Length = 685

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/237 (84%), Positives = 222/237 (93%)

Query: 1   MKDPFDHWLSGNPNQANRLLDFVIDRAEERLRRRQEKETARKTAGKKLRLPGKLADCSDA 60
           +KDPFDHWLSGNP QANRLLDFVI+RA+ERLRRR EKET+RK+A KKLRLPGKLADC++ 
Sbjct: 400 IKDPFDHWLSGNPAQANRLLDFVIERADERLRRRAEKETSRKSAVKKLRLPGKLADCTNT 459

Query: 61  GTEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTANAQLSDLVQA 120
            TEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNV SA +DK+TANAQL+DL+QA
Sbjct: 460 ATEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVVSATRDKVTANAQLADLIQA 519

Query: 121 IGCGTLAHYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAVPPL 180
           +GCGT  +YREEDLRY R+IIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAVPPL
Sbjct: 520 LGCGTGTNYREEDLRYSRVIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAVPPL 579

Query: 181 YKLKHGTKSIYARDDAHKDELLKSEFNANAKVEVNRFKGLGEMMPAQLKETTMDSGQ 237
           Y+L HG+K++YARD+AHKD LLKSEFNANAKV+V RFKGLGEMMPAQLKETTMD  +
Sbjct: 580 YRLTHGSKTVYARDEAHKDALLKSEFNANAKVDVGRFKGLGEMMPAQLKETTMDPAK 636


>ref|ZP_01047276.1| gram negative topoisomerase IV, subunit B [Nitrobacter sp. Nb-311A]
 gb|EAQ34704.1| gram negative topoisomerase IV, subunit B [Nitrobacter sp. Nb-311A]
          Length = 681

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/237 (84%), Positives = 222/237 (93%)

Query: 1   MKDPFDHWLSGNPNQANRLLDFVIDRAEERLRRRQEKETARKTAGKKLRLPGKLADCSDA 60
           +KDPFDHWLSGNP QAN+LLDFVI+RA+ERLRRR EKET+RK+A KKLRLPGKLADC++ 
Sbjct: 396 IKDPFDHWLSGNPVQANKLLDFVIERADERLRRRAEKETSRKSAVKKLRLPGKLADCTNT 455

Query: 61  GTEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTANAQLSDLVQA 120
            TEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASA +DK+TANAQL+DL+QA
Sbjct: 456 ATEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASATRDKVTANAQLADLIQA 515

Query: 121 IGCGTLAHYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAVPPL 180
           +GCGT  +YREEDLRY R+IIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAVPPL
Sbjct: 516 LGCGTGTNYREEDLRYSRVIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAVPPL 575

Query: 181 YKLKHGTKSIYARDDAHKDELLKSEFNANAKVEVNRFKGLGEMMPAQLKETTMDSGQ 237
           Y+L HG+K++YARDDA KD LLKSEFNANAKV+V RFKGLGEMMPAQLKETTMD  +
Sbjct: 576 YRLTHGSKTVYARDDADKDALLKSEFNANAKVDVGRFKGLGEMMPAQLKETTMDPAK 632


>ref|YP_532694.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18]
 gb|ABD88375.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18]
          Length = 685

 Score =  421 bits (1081), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/237 (83%), Positives = 222/237 (93%)

Query: 1   MKDPFDHWLSGNPNQANRLLDFVIDRAEERLRRRQEKETARKTAGKKLRLPGKLADCSDA 60
           +KDPFDHWLSGNP QAN+LL+FV++RA+ERLRRRQEKE +RKTA KKLRLPGKLADC++ 
Sbjct: 400 IKDPFDHWLSGNPLQANKLLEFVLERADERLRRRQEKEISRKTAVKKLRLPGKLADCTNT 459

Query: 61  GTEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTANAQLSDLVQA 120
             EGSELFIVEGDSAGGSAKQ RDRKTQA+LPLRGKILNVASA +DKLTANAQLSDL+QA
Sbjct: 460 AAEGSELFIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVASATRDKLTANAQLSDLMQA 519

Query: 121 IGCGTLAHYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAVPPL 180
           IGCG+ A+YRE+DLRY RIIIMTDADVDGAHIASLLITFFYRQMP+LIDEGHLYLAVPPL
Sbjct: 520 IGCGSGANYREDDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLYLAVPPL 579

Query: 181 YKLKHGTKSIYARDDAHKDELLKSEFNANAKVEVNRFKGLGEMMPAQLKETTMDSGQ 237
           Y+L HG K++YARDDAHK++LLKSEFNANAKV+V RFKGLGEMMPAQLKETTMD  +
Sbjct: 580 YRLTHGAKTVYARDDAHKEQLLKSEFNANAKVDVGRFKGLGEMMPAQLKETTMDPAK 636


>ref|YP_577569.1| DNA topoisomerase IV subunit B [Nitrobacter hamburgensis X14]
 gb|ABE63109.1| DNA topoisomerase IV subunit B [Nitrobacter hamburgensis X14]
          Length = 683

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/234 (85%), Positives = 220/234 (94%)

Query: 1   MKDPFDHWLSGNPNQANRLLDFVIDRAEERLRRRQEKETARKTAGKKLRLPGKLADCSDA 60
           +KDPFDHWLSGNP QAN+LLDFVI+RA+ERLRRR EKET+RK+A KKLRLPGKLADC++ 
Sbjct: 398 IKDPFDHWLSGNPVQANKLLDFVIERADERLRRRAEKETSRKSAVKKLRLPGKLADCTNT 457

Query: 61  GTEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTANAQLSDLVQA 120
            T+GSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASA +DK+TANAQLSDL+QA
Sbjct: 458 ATDGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASATRDKVTANAQLSDLIQA 517

Query: 121 IGCGTLAHYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAVPPL 180
           +GCGT  +YREEDLRY R+IIMTDADVDGAHIASLLITFFYRQM  LIDEGHLYLAVPPL
Sbjct: 518 LGCGTGTNYREEDLRYSRVIIMTDADVDGAHIASLLITFFYRQMRPLIDEGHLYLAVPPL 577

Query: 181 YKLKHGTKSIYARDDAHKDELLKSEFNANAKVEVNRFKGLGEMMPAQLKETTMD 234
           Y+L HG+K++YARDDAHKD LLKSEFNANAKV+V RFKGLGEMMPAQLKETTMD
Sbjct: 578 YRLTHGSKTVYARDDAHKDALLKSEFNANAKVDVGRFKGLGEMMPAQLKETTMD 631