BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0146.0003.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001208581.1| putative cation-driven multidrug efflux pump...   134   4e-30
ref|NP_767748.1| hypothetical protein blr1108 [Bradyrhizobium ja...   127   8e-28
ref|YP_001236941.1| putative cation-driven multidrug efflux pump...   119   2e-25
ref|ZP_08628199.1| hypothetical protein CSIRO_1270 [Bradyrhizobi...   111   3e-23
ref|YP_783769.1| multi anti extrusion protein MatE [Rhodopseudom...   111   4e-23

>ref|YP_001208581.1| putative cation-driven multidrug efflux pump membrane protein
          [Bradyrhizobium sp. ORS 278]
 emb|CAL80366.1| putative cation-driven multidrug efflux pump; putative membrane
          protein [Bradyrhizobium sp. ORS 278]
          Length = 482

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 79/92 (85%), Gaps = 3/92 (3%)

Query: 1  MSDLGLAEIPVDEQERPLPPPVTKPARNALLDGPILRTLLWLAWPNVIALSAGTCVVIAE 60
          MS++GLA+ PV E  RP+PP   KPARNA+ DGPIL+TLL LAWPN+IA SAGTCVVIAE
Sbjct: 1  MSEIGLADTPVGE-GRPVPP--VKPARNAVADGPILKTLLSLAWPNLIANSAGTCVVIAE 57

Query: 61 TSYIGRLGVESLAAMALVFPCVILTMTMSRSA 92
          TSYIGRLG+E+LAAMALVFP VILTMTMS  A
Sbjct: 58 TSYIGRLGIEALAAMALVFPLVILTMTMSGGA 89


>ref|NP_767748.1| hypothetical protein blr1108 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46373.1| blr1108 [Bradyrhizobium japonicum USDA 110]
          Length = 479

 Score =  127 bits (318), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 78/92 (84%), Gaps = 5/92 (5%)

Query: 1  MSDLGLAEIPVDEQERPLPPPVTKPARNALLDGPILRTLLWLAWPNVIALSAGTCVVIAE 60
          MSD+  AEIPVDEQE    PP  +P R+AL+DGPILRTLL LAWPNVIALSAGTC VIAE
Sbjct: 1  MSDI--AEIPVDEQE---RPPPPRPVRSALMDGPILRTLLGLAWPNVIALSAGTCTVIAE 55

Query: 61 TSYIGRLGVESLAAMALVFPCVILTMTMSRSA 92
          TSYIGRLGVE+LAAMALVFP VILTMTMS  A
Sbjct: 56 TSYIGRLGVEALAAMALVFPTVILTMTMSGGA 87


>ref|YP_001236941.1| putative cation-driven multidrug efflux pump [Bradyrhizobium sp.
          BTAi1]
 gb|ABQ33035.1| putative cation-driven multidrug efflux pump [Bradyrhizobium sp.
          BTAi1]
          Length = 485

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 71/92 (77%), Gaps = 3/92 (3%)

Query: 1  MSDLGLAEIPVDEQERPLPPPVTKPARNALLDGPILRTLLWLAWPNVIALSAGTCVVIAE 60
          MS+  LAE  V   ER  P    +  R+AL DGPILRTLL LAWPN+IA SAGTCVVIAE
Sbjct: 1  MSEYSLAESSV---ERATPKQAERQPRSALSDGPILRTLLSLAWPNIIANSAGTCVVIAE 57

Query: 61 TSYIGRLGVESLAAMALVFPCVILTMTMSRSA 92
          TSYIGRLG+E+LAAMALVFP VILTMTMS  A
Sbjct: 58 TSYIGRLGIEALAAMALVFPLVILTMTMSGGA 89


>ref|ZP_08628199.1| hypothetical protein CSIRO_1270 [Bradyrhizobiaceae bacterium
          SG-6C]
 gb|EGP09108.1| hypothetical protein CSIRO_1270 [Bradyrhizobiaceae bacterium
          SG-6C]
          Length = 465

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 65/82 (79%)

Query: 11 VDEQERPLPPPVTKPARNALLDGPILRTLLWLAWPNVIALSAGTCVVIAETSYIGRLGVE 70
          V  +E+P  PP+  P +N LLDGPIL TLL LA PNV+AL+AGTCV IAETSYIGRLGVE
Sbjct: 2  VQAEEQPPLPPIRSPQKNPLLDGPILPTLLKLAAPNVVALTAGTCVAIAETSYIGRLGVE 61

Query: 71 SLAAMALVFPCVILTMTMSRSA 92
           LAAMALVFP VIL MTMS  A
Sbjct: 62 PLAAMALVFPFVILMMTMSGGA 83


>ref|YP_783769.1| multi anti extrusion protein MatE [Rhodopseudomonas palustris
          BisA53]
 gb|ABJ08789.1| multi antimicrobial extrusion protein MatE [Rhodopseudomonas
          palustris BisA53]
          Length = 468

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/67 (83%), Positives = 61/67 (91%)

Query: 26 ARNALLDGPILRTLLWLAWPNVIALSAGTCVVIAETSYIGRLGVESLAAMALVFPCVILT 85
          A+NALLDGPIL TLL LAWPNV+AL+AGTCVV+AETSYIGRLG E+LAAMALVFP VILT
Sbjct: 17 AKNALLDGPILPTLLRLAWPNVVALTAGTCVVVAETSYIGRLGTEALAAMALVFPFVILT 76

Query: 86 MTMSRSA 92
          MTMS  A
Sbjct: 77 MTMSGGA 83