BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0145.0003.p         (403 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774948.1| hypothetical protein bll8308 [Bradyrhizobium ja...   828   0.0  
ref|ZP_06368264.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]...    40   0.63 
ref|NP_001229653.1| indoleamine 2,3-dioxygenase 1 [Ornithorhynch...    38   3.5  

>ref|NP_774948.1| hypothetical protein bll8308 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53573.1| bll8308 [Bradyrhizobium japonicum USDA 110]
          Length = 403

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/403 (100%), Positives = 403/403 (100%)

Query: 1   MTSVVRPTAVDSGSPVAPERSPNRSEDIFSHLTDSIDRSERKRPLGPVSNFTVEQLPHCV 60
           MTSVVRPTAVDSGSPVAPERSPNRSEDIFSHLTDSIDRSERKRPLGPVSNFTVEQLPHCV
Sbjct: 1   MTSVVRPTAVDSGSPVAPERSPNRSEDIFSHLTDSIDRSERKRPLGPVSNFTVEQLPHCV 60

Query: 61  AEIQRSERPNGAIKAFGRSVNAMIGEADYSGLLLRLPQCDFEIAKTDIQYLVNCTYQMSA 120
           AEIQRSERPNGAIKAFGRSVNAMIGEADYSGLLLRLPQCDFEIAKTDIQYLVNCTYQMSA
Sbjct: 61  AEIQRSERPNGAIKAFGRSVNAMIGEADYSGLLLRLPQCDFEIAKTDIQYLVNCTYQMSA 120

Query: 121 FAGLDPSDAELTVGAELSRLASLTCQRQPSVGVLSYEDMILTNPVQSDPRLYCLGAVGVE 180
           FAGLDPSDAELTVGAELSRLASLTCQRQPSVGVLSYEDMILTNPVQSDPRLYCLGAVGVE
Sbjct: 121 FAGLDPSDAELTVGAELSRLASLTCQRQPSVGVLSYEDMILTNPVQSDPRLYCLGAVGVE 180

Query: 181 ERDFCAGHQLIESELQSAMDALLDLRDLGGADASRCLTQCVARLESAQDVLTRFEDHMSP 240
           ERDFCAGHQLIESELQSAMDALLDLRDLGGADASRCLTQCVARLESAQDVLTRFEDHMSP
Sbjct: 181 ERDFCAGHQLIESELQSAMDALLDLRDLGGADASRCLTQCVARLESAQDVLTRFEDHMSP 240

Query: 241 ELFSQFRAFYGKNPYRNTLGPSGRFSARVVAVSVLLVGEELFRQKPQFYWDLYRLSEYYP 300
           ELFSQFRAFYGKNPYRNTLGPSGRFSARVVAVSVLLVGEELFRQKPQFYWDLYRLSEYYP
Sbjct: 241 ELFSQFRAFYGKNPYRNTLGPSGRFSARVVAVSVLLVGEELFRQKPQFYWDLYRLSEYYP 300

Query: 301 QTSIGKVFCWLSPDNRDAWLKPAWLEGKADFPRSATISPVVERGGREIERLHEACVCALD 360
           QTSIGKVFCWLSPDNRDAWLKPAWLEGKADFPRSATISPVVERGGREIERLHEACVCALD
Sbjct: 301 QTSIGKVFCWLSPDNRDAWLKPAWLEGKADFPRSATISPVVERGGREIERLHEACVCALD 360

Query: 361 RFTRMHRRAALKHTVEPGRPLVGVEASESIEVVLCQRLLTLPP 403
           RFTRMHRRAALKHTVEPGRPLVGVEASESIEVVLCQRLLTLPP
Sbjct: 361 RFTRMHRRAALKHTVEPGRPLVGVEASESIEVVLCQRLLTLPP 403


>ref|ZP_06368264.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gb|EFC21600.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 1080

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 12/105 (11%)

Query: 292 LYRLSEYYPQTSIGKVFCWLSPDNRDAWLKPAWLEGKADFPRSATISPVVERGGREIERL 351
           L RL++      +G+   WL PD R         EG+  F  SA IS + +RGG+ + ++
Sbjct: 64  LLRLADTADPAGLGREIPWL-PDFRP--------EGRVRFMLSAEISSIYKRGGK-VRKV 113

Query: 352 HEACVC-ALDRFTRMHRR-AALKHTVEPGRPLVGVEASESIEVVL 394
           H      +LD    ++R+ + + +    GRP++G+++ + +E+VL
Sbjct: 114 HNLVFAPSLDVAETINRKLSKVGNLASDGRPILGLDSRDLLELVL 158


>ref|NP_001229653.1| indoleamine 2,3-dioxygenase 1 [Ornithorhynchus anatinus]
 dbj|BAG68602.1| indoleamine 2,3-dioxygenase [Ornithorhynchus anatinus]
          Length = 410

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 98/260 (37%), Gaps = 52/260 (20%)

Query: 153 VLSYEDMILTNPVQSDPR----LYCLGAV-----GVEERDFCAGHQLIESELQSAMDALL 203
           VL Y D IL N  + DP     L  L  +     G   + F     L+E    SA+  + 
Sbjct: 127 VLVYADCILANWKKKDPNRPMDLENLDTIVSLPGGDNSKAFFLVSLLVELAAASAVKVIP 186

Query: 204 DLRD-LGGADASR---CLTQCVARLESAQDVLTRFEDHMSPELFSQ----FRAFYGKNP- 254
            + D L   DAS     L +  + ++  QD  T   DH+    + +    F + +  NP 
Sbjct: 187 VIMDALSREDASSLQIALHELTSSVQKTQDAFTLIHDHVDSTCYYETLRIFLSGWKDNPL 246

Query: 255 ------YRNTLGPSGRFSARVVAVSV------LLVGEELFRQKPQFYWDLYRLSEYYPQT 302
                 Y         FS    A S       LL+G +   +       L R+ +Y P  
Sbjct: 247 LPDGLLYEGVWKTPKEFSGGSAAQSTIIQCFDLLLGIQHSSRDEAAANFLKRMRDYMP-- 304

Query: 303 SIGKVFCWLSPDNRDAWLKPAWLEGKADFPRSATISP-VVERGGREIERLHEACVCALDR 361
                     P +RD      +L+  A  P   T+ P V+ +G  ++++  + CV AL  
Sbjct: 305 ----------PAHRD------FLQLVASGP---TVRPFVLSKGDPDLQKAFDKCVSALVA 345

Query: 362 FTRMHRRAALKHTVEPGRPL 381
               H +   K+ V PG+ L
Sbjct: 346 LRNYHLKVVAKYIVWPGQKL 365