BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0144.0056.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771856.1| hypothetical protein bll5216 [Bradyrhizobium ja...   226   6e-58
ref|NP_774299.1| hypothetical protein bll7659 [Bradyrhizobium ja...   184   4e-45
ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobi...   162   2e-38
ref|ZP_01045318.1| hypothetical protein NB311A_15302 [Nitrobacte...   157   6e-37
ref|YP_534731.1| hypothetical protein RPC_4890 [Rhodopseudomonas...   153   9e-36

>ref|NP_771856.1| hypothetical protein bll5216 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50481.1| bll5216 [Bradyrhizobium japonicum USDA 110]
          Length = 200

 Score =  226 bits (577), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 117/135 (86%), Gaps = 9/135 (6%)

Query: 1   VAPLIPEDNTQEVNMTMEDRETFSLIGSDKVEGTNAYDAKGEKVGYIERVMIDKISGKVS 60
           V PL PEDN +EVNMTMEDRETFSLIGSDKVEGTN Y   GEKVGY+ERVMIDKISGKVS
Sbjct: 75  VLPLTPEDNIREVNMTMEDRETFSLIGSDKVEGTNVYGVDGEKVGYVERVMIDKISGKVS 134

Query: 61  YAVLSFGGLLGIGDDHYPLPWQTLKYDTNLGGYVVTGISQDQLRSAPKYADESSWNWSAP 120
           YAVLSFGGLLGIGDDHYPLPWQ LKYDTNLGGY VTGI+Q        YADESSWNWS P
Sbjct: 135 YAVLSFGGLLGIGDDHYPLPWQALKYDTNLGGY-VTGITQ--------YADESSWNWSDP 185

Query: 121 ATTRSVNAYYGVPVA 135
           ATTRSVNAYYGVPVA
Sbjct: 186 ATTRSVNAYYGVPVA 200


>ref|NP_774299.1| hypothetical protein bll7659 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52924.1| bll7659 [Bradyrhizobium japonicum USDA 110]
          Length = 110

 Score =  184 bits (466), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/107 (85%), Positives = 94/107 (87%), Gaps = 1/107 (0%)

Query: 15  MTMEDRETFSLIGSDKVEGTNAYDAKGEKVGYIERVMIDKISGKVSYAVLSFGGLLGIGD 74
           M MEDRETFSLIGSD VEGTN Y A GEKVGYIERVMIDK+SGKVS+AVLSF GLL IGD
Sbjct: 1   MAMEDRETFSLIGSDNVEGTNVYGADGEKVGYIERVMIDKVSGKVSHAVLSFDGLLRIGD 60

Query: 75  DHYPLPWQTLKYDTNLGGYVVTGISQDQLRSAPKYADESSWNWSAPA 121
            HYPLPWQ LKYDTNL GY VTGI+QD LRSAPKYADESSWNWS PA
Sbjct: 61  VHYPLPWQALKYDTNLCGY-VTGITQDHLRSAPKYADESSWNWSDPA 106


>ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobium sp. ORS 278]
 emb|CAL77699.1| conserved hypothetical protein with Photosynthetic reaction centre
           domain (PCR-barrel) [Bradyrhizobium sp. ORS 278]
          Length = 126

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 95/119 (79%), Gaps = 1/119 (0%)

Query: 17  MEDRETFSLIGSDKVEGTNAYDAKGEKVGYIERVMIDKISGKVSYAVLSFGGLLGIGDDH 76
           +E  E  +LIGSDKVEGT  Y A G+++G IERVMIDK+SG+VSYAVL+FGG LG+G+DH
Sbjct: 9   LEQSEYGNLIGSDKVEGTAVYGADGDRIGTIERVMIDKLSGRVSYAVLAFGGFLGLGNDH 68

Query: 77  YPLPWQTLKYDTNLGGYVVTGISQDQLRSAPKYADESSWNWSAPATTRSVNAYYGVPVA 135
           YPLPW +LKYDT LGGY VT ++QDQLR APKY+DE  W+W   AT R V+ YYGV ++
Sbjct: 69  YPLPWPSLKYDTQLGGY-VTAVTQDQLRGAPKYSDEREWDWGDLATGRKVDDYYGVQLS 126


>ref|ZP_01045318.1| hypothetical protein NB311A_15302 [Nitrobacter sp. Nb-311A]
 gb|EAQ36646.1| hypothetical protein NB311A_15302 [Nitrobacter sp. Nb-311A]
          Length = 170

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 15  MTMEDRETFSLIGSDKVEGTNAYDAKGEKVGYIERVMIDKISGKVSYAVLSFGGLLGIGD 74
           M  ++ ET +LIGSDKVEGT  +    EK+G IERVMI+K SG+VSYAVLSFGG LGIGD
Sbjct: 1   MATQENETRTLIGSDKVEGTAVFGPTDEKIGSIERVMIEKTSGRVSYAVLSFGGFLGIGD 60

Query: 75  DHYPLPWQTLKYDTNLGGYVVTGISQDQLRSAPKYADESSWNWSAPATTRSV 126
           DHYPLPW TLKYDT LGGY  TGI+ DQL+ APKY  ES+WNWS P  T S 
Sbjct: 61  DHYPLPWHTLKYDTRLGGY-RTGITLDQLQKAPKYQTESNWNWSEPGRTSSA 111


>ref|YP_534731.1| hypothetical protein RPC_4890 [Rhodopseudomonas palustris BisB18]
 gb|ABD90412.1| PRC-barrel [Rhodopseudomonas palustris BisB18]
          Length = 120

 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/121 (63%), Positives = 90/121 (74%), Gaps = 1/121 (0%)

Query: 15  MTMEDRETFSLIGSDKVEGTNAYDAKGEKVGYIERVMIDKISGKVSYAVLSFGGLLGIGD 74
           M  E  ET SLIGSDKV+GT  Y   GEKVG IERVMI+K+SGKVSYAVLSFGG LGIGD
Sbjct: 1   MITEADETVSLIGSDKVQGTAVYGPDGEKVGAIERVMIEKLSGKVSYAVLSFGGFLGIGD 60

Query: 75  DHYPLPWQTLKYDTNLGGYVVTGISQDQLRSAPKYADESSWNWSAPATTRSVNAYYGVPV 134
           D+YPLPW +LKY+  LGGY  T ++ DQ++ APKYA  S WNW     TR ++ YYGV +
Sbjct: 61  DYYPLPWPSLKYNVELGGY-QTMVTNDQVKGAPKYARTSDWNWRDEQGTRKIDDYYGVAM 119

Query: 135 A 135
           A
Sbjct: 120 A 120