BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0144.0048.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768228.1| hypothetical protein blr1588 [Bradyrhizobium ja... 481 e-134 ref|NP_774654.1| hypothetical protein bll8014 [Bradyrhizobium ja... 476 e-132 ref|YP_001239331.1| hypothetical protein BBta_3324 [Bradyrhizobi... 464 e-129 ref|ZP_08627058.1| Ku domain-containing protein [Bradyrhizobiace... 450 e-124 ref|NP_769760.1| ATP-dependent DNA ligase protein [Bradyrhizobiu... 400 e-110 >ref|NP_768228.1| hypothetical protein blr1588 [Bradyrhizobium japonicum USDA 110] dbj|BAC46853.1| conserved hypothetical protein [Bradyrhizobium japonicum USDA 110] Length = 323 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 243/292 (83%), Positives = 260/292 (89%), Gaps = 4/292 (1%) Query: 1 VALYPATSESEKISFNQLNRATGHRIKYLKIDADTGDEVPNEDIVKGYELEKGQYIEVSK 60 VALYPATSESEKISFNQLNR TGHRIKY+K+D DTGDEVPNEDIVKGYELEKGQ+IEV+K Sbjct: 25 VALYPATSESEKISFNQLNRQTGHRIKYIKVDQDTGDEVPNEDIVKGYELEKGQFIEVTK 84 Query: 61 EELEEIALESTRTIEIDEFVDRSDIDPRYLIRPYYLRPDGKVGHDAFAVIRETIRSLNKV 120 EELEEIALESTRTIEIDEFVD+S+IDPRYLIRPYYLRPDGKVGHDAFAVIRETIR +NKV Sbjct: 85 EELEEIALESTRTIEIDEFVDKSEIDPRYLIRPYYLRPDGKVGHDAFAVIRETIREMNKV 144 Query: 121 AIGRVVLTNREHIIALEPMDKGLVGTLLRYPYEVRSEQEYFDEIQDVKVTKDMLDLAKHI 180 AIGRVVLTNREHIIALEPMDKGLVGTLLRYPYEVRSEQEYFDEIQDVKVTKDMLDLA+HI Sbjct: 145 AIGRVVLTNREHIIALEPMDKGLVGTLLRYPYEVRSEQEYFDEIQDVKVTKDMLDLARHI 204 Query: 181 VNQKAGRFEPEKFEDHYESALIDLINQKRAGKTITPTSKPAATNVVNLMEALRRSVGNEP 240 VNQKAG F+PEKFEDHYESAL++LINQKRAGK I P +P NVV+LMEALR+SVG E Sbjct: 205 VNQKAGTFDPEKFEDHYESALVELINQKRAGKLIRPKERPKGENVVDLMEALRQSVGREK 264 Query: 241 A--PAKV-AKPAKKPRKATGGQKEMLMSIEGKK-PKETAAKKPAPGARRKSA 288 A PA K AKKPRKA GQKEMLM I GKK KE AKK ++R+SA Sbjct: 265 ATEPANAPKKSAKKPRKAASGQKEMLMPIAGKKQAKEAGAKKQPARSQRRSA 316 >ref|NP_774654.1| hypothetical protein bll8014 [Bradyrhizobium japonicum USDA 110] dbj|BAC53279.1| bll8014 [Bradyrhizobium japonicum USDA 110] Length = 308 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 242/266 (90%), Positives = 254/266 (95%) Query: 1 VALYPATSESEKISFNQLNRATGHRIKYLKIDADTGDEVPNEDIVKGYELEKGQYIEVSK 60 VALYPATSESEKISFNQLNR TGHRIKYLK+DADTGDEVPNEDIVKGY+LEK Q+IEV+K Sbjct: 20 VALYPATSESEKISFNQLNRQTGHRIKYLKVDADTGDEVPNEDIVKGYQLEKDQFIEVTK 79 Query: 61 EELEEIALESTRTIEIDEFVDRSDIDPRYLIRPYYLRPDGKVGHDAFAVIRETIRSLNKV 120 EELEEIALESTRTIEIDEFVDR+DIDPRYLIRPYY+RPDGKVGHDAFAVIRETIR ++KV Sbjct: 80 EELEEIALESTRTIEIDEFVDRTDIDPRYLIRPYYIRPDGKVGHDAFAVIRETIREMDKV 139 Query: 121 AIGRVVLTNREHIIALEPMDKGLVGTLLRYPYEVRSEQEYFDEIQDVKVTKDMLDLAKHI 180 AIGRVVLTNREHIIALEPMDKGLVGTLLRYPYEVRSEQEYFDEIQDVKVTKDMLDLA+HI Sbjct: 140 AIGRVVLTNREHIIALEPMDKGLVGTLLRYPYEVRSEQEYFDEIQDVKVTKDMLDLARHI 199 Query: 181 VNQKAGRFEPEKFEDHYESALIDLINQKRAGKTITPTSKPAATNVVNLMEALRRSVGNEP 240 VNQKAGRF+PEKFEDHYE+ALI+LINQKRAGK ITP KPAATNVVNLMEALRRSVG E Sbjct: 200 VNQKAGRFDPEKFEDHYETALIELINQKRAGKPITPKEKPAATNVVNLMEALRRSVGQEA 259 Query: 241 APAKVAKPAKKPRKATGGQKEMLMSI 266 APAK KPAKKPRKA GQKEMLMSI Sbjct: 260 APAKAGKPAKKPRKAAAGQKEMLMSI 285 >ref|YP_001239331.1| hypothetical protein BBta_3324 [Bradyrhizobium sp. BTAi1] gb|ABQ35425.1| hypothetical protein BBta_3324 [Bradyrhizobium sp. BTAi1] Length = 310 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 240/291 (82%), Positives = 260/291 (89%), Gaps = 3/291 (1%) Query: 1 VALYPATSESEKISFNQLNRATGHRIKYLKIDADTGDEVPNEDIVKGYELEKGQYIEVSK 60 VALYPATSESEKISFNQLNR TGHRI+Y+K+DADTG+EVPNEDIVKGYELEKGQYIEVSK Sbjct: 20 VALYPATSESEKISFNQLNRQTGHRIRYVKVDADTGEEVPNEDIVKGYELEKGQYIEVSK 79 Query: 61 EELEEIALESTRTIEIDEFVDRSDIDPRYLIRPYYLRPDGKVGHDAFAVIRETIRSLNKV 120 EE EEIALESTRTIEIDEFV R+DIDPRYLIRPYYLRPDGKVGHDAFAVIRETIR +NKV Sbjct: 80 EEFEEIALESTRTIEIDEFVARTDIDPRYLIRPYYLRPDGKVGHDAFAVIRETIREMNKV 139 Query: 121 AIGRVVLTNREHIIALEPMDKGLVGTLLRYPYEVRSEQEYFDEIQDVKVTKDMLDLAKHI 180 AIGR+VLTNREHIIALE MDKGLVGTLLRYPYE+RSEQEYF+EIQDVK+TKDMLDLA+HI Sbjct: 140 AIGRIVLTNREHIIALEAMDKGLVGTLLRYPYELRSEQEYFEEIQDVKITKDMLDLARHI 199 Query: 181 VNQKAGRFEPEKFEDHYESALIDLINQKRAGKTITPTSKPAATNVVNLMEALRRSVGNEP 240 V Q+AG F PEKFEDHYE+ALIDLINQKRAGKTI P +P NVV+LMEALRRSVG Sbjct: 200 VEQRAGTFAPEKFEDHYETALIDLINQKRAGKTIRPKDRPKGENVVDLMEALRRSVGQTA 259 Query: 241 APAK-VAKPAKKPRKATGGQKEMLMSIEGKKP--KETAAKKPAPGARRKSA 288 +P + AKPAKKP+KA GQKEMLM I GKK KE +AKK A G +RKSA Sbjct: 260 SPTQAAAKPAKKPKKAAAGQKEMLMPIAGKKTAGKEASAKKQASGRQRKSA 310 >ref|ZP_08627058.1| Ku domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10338.1| Ku domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] Length = 310 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 229/291 (78%), Positives = 253/291 (86%), Gaps = 3/291 (1%) Query: 1 VALYPATSESEKISFNQLNRATGHRIKYLKIDADTGDEVPNEDIVKGYELEKGQYIEVSK 60 VALYPATSESEK+SFNQLNR TGHRIKY K+DADTG+EV NEDIVKGY+++ +IEV+K Sbjct: 20 VALYPATSESEKVSFNQLNRKTGHRIKYAKVDADTGEEVANEDIVKGYKVDTDTFIEVTK 79 Query: 61 EELEEIALESTRTIEIDEFVDRSDIDPRYLIRPYYLRPDGKVGHDAFAVIRETIRSLNKV 120 EELE +ALESTRTIEIDEFVDRS+IDPRYLIRPYYL PDGKVGHDAFAVIRETIR +NKV Sbjct: 80 EELENVALESTRTIEIDEFVDRSEIDPRYLIRPYYLVPDGKVGHDAFAVIRETIREMNKV 139 Query: 121 AIGRVVLTNREHIIALEPMDKGLVGTLLRYPYEVRSEQEYFDEIQDVKVTKDMLDLAKHI 180 AIGRVVLTNREHIIAL+P+DKGL+GTLLRYPYEVRS EYFDEIQDVKVTKDMLDLA+HI Sbjct: 140 AIGRVVLTNREHIIALDPLDKGLMGTLLRYPYEVRSADEYFDEIQDVKVTKDMLDLARHI 199 Query: 181 VNQKAGRFEPEKFEDHYESALIDLINQKRAGKTITPTSKPAATNVVNLMEALRRSVGNEP 240 VNQKAG FEP+KFED YE+ALIDLINQKRAGK IT ++P NVV+LM+ALR+S+G Sbjct: 200 VNQKAGHFEPDKFEDQYETALIDLINQKRAGKPITAKARPRGENVVDLMDALRKSIGGGA 259 Query: 241 APAKVA--KPAKKPRKATGGQKEMLMSIEGKKP-KETAAKKPAPGARRKSA 288 A A A K AKKPRKA GQKEMLM I GKKP KE AKKPA +RKSA Sbjct: 260 AAATEAPKKTAKKPRKAAAGQKEMLMPIAGKKPAKEGVAKKPAAKPQRKSA 310 >ref|NP_769760.1| ATP-dependent DNA ligase protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48385.1| bll3120 [Bradyrhizobium japonicum USDA 110] Length = 327 Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/294 (68%), Positives = 242/294 (82%), Gaps = 7/294 (2%) Query: 1 VALYPATSESEKISFNQLNRATGHRIKYLKIDADTGDEVPNEDIVKGYELEKGQYIEVSK 60 VALYPATS++EK+SFNQ+NR TGHRIKYLK+DA+TGDEV +EDIVKGY+++ YIEV+K Sbjct: 20 VALYPATSDTEKVSFNQINRKTGHRIKYLKVDAETGDEVTSEDIVKGYKVDTDTYIEVTK 79 Query: 61 EELEEIALESTRTIEIDEFVDRSDIDPRYLIRPYYLRPDGKVGHDAFAVIRETIRSLNKV 120 +EL+EIAL+ST TIEIDEFV ++DID RYLIRPYYL PDGKVGHDAFAVIRETIRS++KV Sbjct: 80 DELDEIALDSTHTIEIDEFVPKADIDNRYLIRPYYLVPDGKVGHDAFAVIRETIRSMDKV 139 Query: 121 AIGRVVLTNREHIIALEPMDKGLVGTLLRYPYEVRSEQEYFDEIQDVKVTKDMLDLAKHI 180 AIGRVVLTNREHIIALEP++ GL+GTLLRYPYEVRSE+EYFD+IQDVK+TKDMLDLAKHI Sbjct: 140 AIGRVVLTNREHIIALEPLESGLMGTLLRYPYEVRSEKEYFDDIQDVKLTKDMLDLAKHI 199 Query: 181 VNQKAGRFEPEKFEDHYESALIDLINQKRAG-KTITPTSKPAATNVVNLMEALRRSVGNE 239 V +K+G FEPE FEDHYE+ALIDLIN+KR+G + NV+NLM+AL++S+ +E Sbjct: 200 VEKKSGAFEPELFEDHYEAALIDLINKKRSGAPIAAKAAPKTGGNVINLMDALKKSLASE 259 Query: 240 PAPAKVAK------PAKKPRKATGGQKEMLMSIEGKKPKETAAKKPAPGARRKS 287 A +AK KKP+K GQ+EML+ I GK KE AAK A +K+ Sbjct: 260 KDAAPIAKVVKETVKGKKPKKRVEGQREMLLPIAGKGGKEAAAKTAPKEASKKA 313