BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0144.0042.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771638.1| hypothetical protein bll4998 [Bradyrhizobium ja...   249   1e-64
ref|YP_571712.1| CopG family transcriptional regulator [Nitrobac...   243   1e-62
ref|YP_579029.1| CopG family transcriptional regulator [Nitrobac...   240   5e-62
ref|YP_001241261.1| hypothetical protein BBta_5380 [Bradyrhizobi...   230   5e-59
ref|YP_002296546.1| hypothetical protein RC1_0284 [Rhodospirillu...   216   1e-54

>ref|NP_771638.1| hypothetical protein bll4998 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50263.1| bll4998 [Bradyrhizobium japonicum USDA 110]
          Length = 246

 Score =  249 bits (635), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/135 (89%), Positives = 130/135 (96%)

Query: 1   VHEIRPKPPDSEKITINLGFVDLGQVDLMVQEGFYSNRTDFIRTAIRNQLERHADVVKQS 60
           VHE+RPK PD+EKITINLG+VDLG VDLMVQEGFYSNRTDFIRTAIRNQLERH +VV+QS
Sbjct: 112 VHELRPKAPDTEKITINLGYVDLGHVDLMVQEGFYSNRTDFIRTAIRNQLERHVEVVRQS 171

Query: 61  TARKSLDLGLRNYSREDLEAARRAGDMLHINVLGLATIAQDVTPELARATIASVSVLGAL 120
           TARK LDLGLRNY+REDLEAARRAG+ML INVLGLATIAQDVTPELARATIASVSVLGAL
Sbjct: 172 TARKKLDLGLRNYTREDLEAARRAGEMLQINVLGLATIAQDVTPELARATIASVSVLGAL 231

Query: 121 HASPAVKSALADRTR 135
           HA+PAVK+ALADRTR
Sbjct: 232 HATPAVKAALADRTR 246


>ref|YP_571712.1| CopG family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gb|ABE64880.1| putative transcriptional regulator, CopG family [Nitrobacter
           hamburgensis X14]
          Length = 146

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 129/135 (95%)

Query: 1   VHEIRPKPPDSEKITINLGFVDLGQVDLMVQEGFYSNRTDFIRTAIRNQLERHADVVKQS 60
           V E+RP+ PD+EKIT+NLG+VDLG VDLMV+EGFYSNRTDFIRTAIRNQLERHADVV+QS
Sbjct: 12  VRELRPRTPDTEKITVNLGYVDLGHVDLMVREGFYSNRTDFIRTAIRNQLERHADVVRQS 71

Query: 61  TARKSLDLGLRNYSREDLEAARRAGDMLHINVLGLATIAQDVTPELARATIASVSVLGAL 120
           TARKSLDLGLRNYSREDLEAA+RAG+ML INVLGLATIAQDVT ELARATIA+VSVLGAL
Sbjct: 72  TARKSLDLGLRNYSREDLEAAQRAGEMLQINVLGLATIAQDVTAELARATIAAVSVLGAL 131

Query: 121 HASPAVKSALADRTR 135
           HA+PAVK+ALADR R
Sbjct: 132 HATPAVKAALADRMR 146


>ref|YP_579029.1| CopG family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gb|ABE64569.1| putative transcriptional regulator, CopG family [Nitrobacter
           hamburgensis X14]
          Length = 142

 Score =  240 bits (613), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 129/135 (95%)

Query: 1   VHEIRPKPPDSEKITINLGFVDLGQVDLMVQEGFYSNRTDFIRTAIRNQLERHADVVKQS 60
           VHE+RP  P++EKITINLG+VDLG VDLMVQ+GFYSNRTDFIRTAIRNQLERHADVVKQS
Sbjct: 8   VHELRPNLPETEKITINLGYVDLGHVDLMVQDGFYSNRTDFIRTAIRNQLERHADVVKQS 67

Query: 61  TARKSLDLGLRNYSREDLEAARRAGDMLHINVLGLATIAQDVTPELARATIASVSVLGAL 120
           TARK LDLGLRNY+R DLEAA++AG+MLHINVLGLA+IAQDVT +LARATIASVSVLGAL
Sbjct: 68  TARKGLDLGLRNYTRADLEAAQQAGEMLHINVLGLASIAQDVTTDLARATIASVSVLGAL 127

Query: 121 HASPAVKSALADRTR 135
           HA+PAVK+ALADRTR
Sbjct: 128 HATPAVKAALADRTR 142


>ref|YP_001241261.1| hypothetical protein BBta_5380 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37355.1| hypothetical protein BBta_5380 [Bradyrhizobium sp. BTAi1]
          Length = 144

 Score =  230 bits (586), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 112/135 (82%), Positives = 123/135 (91%)

Query: 1   VHEIRPKPPDSEKITINLGFVDLGQVDLMVQEGFYSNRTDFIRTAIRNQLERHADVVKQS 60
           V  +R K PD+EKIT+NLG+VDLGQ+DLMVQEGFYSNRTDFIRTAIRNQL+RH DVVKQS
Sbjct: 10  VQPLRAKAPDTEKITVNLGYVDLGQIDLMVQEGFYSNRTDFIRTAIRNQLDRHGDVVKQS 69

Query: 61  TARKSLDLGLRNYSREDLEAARRAGDMLHINVLGLATIAQDVTPELARATIASVSVLGAL 120
           T R SLDLGLRN+SR DLEAA+RAG ML INVLGLATIA DVTPELARATIASV+VLGAL
Sbjct: 70  TLRHSLDLGLRNFSRADLEAAQRAGQMLQINVLGLATIAADVTPELARATIASVAVLGAL 129

Query: 121 HASPAVKSALADRTR 135
           HA+PAVK+ALADR R
Sbjct: 130 HATPAVKAALADRMR 144


>ref|YP_002296546.1| hypothetical protein RC1_0284 [Rhodospirillum centenum SW]
 gb|ACI97733.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 139

 Score =  216 bits (550), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 119/135 (88%)

Query: 1   VHEIRPKPPDSEKITINLGFVDLGQVDLMVQEGFYSNRTDFIRTAIRNQLERHADVVKQS 60
           VHE+RPK  +SEKITINLGFVDLG +DL+V EGFYSNRTDFIRTAIRNQ+ERH + V+QS
Sbjct: 5   VHELRPKAAESEKITINLGFVDLGHIDLLVAEGFYSNRTDFIRTAIRNQIERHGEAVRQS 64

Query: 61  TARKSLDLGLRNYSREDLEAARRAGDMLHINVLGLATIAQDVTPELARATIASVSVLGAL 120
             RK++DLGLR+Y+R+DLEAAR AG  L I VLGLA+IA DVTPELARA IASVSVLGAL
Sbjct: 65  VKRKAVDLGLRHYTRQDLEAARDAGSPLRIQVLGLASIATDVTPELARAAIASVSVLGAL 124

Query: 121 HASPAVKSALADRTR 135
           HASPAVK+ALADR R
Sbjct: 125 HASPAVKAALADRIR 139