BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0144.0025.p (436 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774721.1| site-specific integrase/recombinase [Bradyrhizo... 129 8e-28 ref|ZP_01864998.1| phage integrase [Erythrobacter sp. SD-21] >gi... 88 3e-15 ref|YP_003796954.1| putative integrase [Candidatus Nitrospira de... 87 7e-15 ref|YP_003796000.1| phage integrase [Candidatus Nitrospira deflu... 83 9e-14 gb|AEH79690.1| site-specific integrase/recombinase [Sinorhizobiu... 79 2e-12 >ref|NP_774721.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] dbj|BAC53346.1| bll8081 [Bradyrhizobium japonicum USDA 110] Length = 457 Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 113/363 (31%), Positives = 180/363 (49%), Gaps = 25/363 (6%) Query: 28 VEGQRERRSTKCTDRDKAIAMARKRKKEMLEEAARLREQDVAIDATFDQAADKCWHAIKA 87 V+G+ ++T +R A +AR+ + E+L A + D TF QAA+ W+ I Sbjct: 47 VDGKTHSKNTYTRNRRAAEKIAREHRAEVLAARAARPPVALKGDLTFSQAAELYWNDIGR 106 Query: 88 KLRTTGERPSRTTRRGEFKRVVLLFGPATMCSAMTVDRFVEVRDWMLE--EPAPARKRGR 145 + +G+ + + +R+VL+ GP MCS +T +++R + + P KRGR Sbjct: 107 HSKKSGQLDA------DLERIVLMVGPERMCSTITSKDRIDIRTRLRDGIRPPGIGKRGR 160 Query: 146 PRKGEVGLAPKTINNLLLVAMGILNYAAAKMKLHLP---DRPLPPHDLFLDETPRSRYLR 202 P K K IN+ + I+++A + +R P E R R L+ Sbjct: 161 PLKDPNTYGTKRINDYSDLIPRIIHHAEVMRETTFNLRRERRHPGDSDREKEGVRHRKLK 220 Query: 203 EGPEQERLLEHCGQDLADVIEFDIETGLRWNELAGLTWDDVDPLEESIRAYVKGKGHDPI 262 EQ RL + +DLAD++ FD+ETG+R L LTW ++ + +K DP+ Sbjct: 221 F-EEQRRLEKVMDRDLADMVLFDLETGMREEALCTLTWGQIEWSLCEVTFPLKTNKRDPV 279 Query: 263 PHTVFLSERALLILDRRRERAAQSEFVFTTTAE---------INYAHGELDVEKGAQVPW 313 HTV L+E A+ IL RR ++E V T+ + N +G+ G VP Sbjct: 280 MHTVDLTEEAMAILYRRLA-MHEAEGVGVTSDDRVFMLRLLKDNTLNGKTR-HAGDLVPV 337 Query: 314 TYNRMHRQFSVALEDSKIADFGFHDLRRTAARRLWWD--SNLEIAQAFLGHKDPKTTLKY 371 + + +F A + + I D HDLRRTA RR++ + S++E A+AFLGH D +TT +Y Sbjct: 338 SPRLLIDRFRKACDAALIDDLVVHDLRRTAGRRVYDEEGSDIEAARAFLGHVDIETTKRY 397 Query: 372 LGI 374 LG+ Sbjct: 398 LGV 400 >ref|ZP_01864998.1| phage integrase [Erythrobacter sp. SD-21] gb|EDL48035.1| phage integrase [Erythrobacter sp. SD-21] Length = 255 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%) Query: 194 ETPRSRYLREGPEQERL---LEHCGQDLADVIEFDIETGLRWNELAGLTWDDVDPLEESI 250 E R+R L + EQ +L +E DL + F I + R + LTWDDVD E Sbjct: 49 EKHRTRTLSDA-EQVKLFAAIEKLHPDLDGPVRFAILSAARKTAVFNLTWDDVDFEENVA 107 Query: 251 RAYVKGKGHDPIPHTVFLSERALLILDRRRERAAQSEFVFTTTAEINYAHGELDVEKGAQ 310 ++KG+G PI H + L+ +A++ L + + + VFT + + + KG + Sbjct: 108 FIHLKGEGDRPIVHEIPLT-KAMVELLQAQPKVENCNRVFTY--KCRKSSRATNHRKGER 164 Query: 311 VPWTYNRMHRQFSVALEDSKIADFGFHDLRRTAARRLWWD-SNLEIAQAFLGHKDPKTTL 369 PWT + +++ ++ ++++ + DF FHDL+ T A RL NLE+A+ LGH D KTT Sbjct: 165 YPWTQHGIYKPWNAVVKEAGLRDFRFHDLQHTGATRLVRAVPNLELARQLLGHADIKTTQ 224 Query: 370 KYLGITKEDEKAA 382 KY ED +AA Sbjct: 225 KYANTNWEDVRAA 237 >ref|YP_003796954.1| putative integrase [Candidatus Nitrospira defluvii] emb|CBK41028.1| putative Integrase [Candidatus Nitrospira defluvii] Length = 356 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 100/364 (27%), Positives = 151/364 (41%), Gaps = 52/364 (14%) Query: 13 VNVVKVGRIFHYDIMVEGQRERRSTKCTDRDKAIAMARKRKKEMLEEAARLREQDVAIDA 72 + +VK I+ EG++ RRST+ +D+ A A+ K K +++E + ++ A Sbjct: 1 MGLVKRNNIWWMSFTYEGRQVRRSTETSDKKLAEAILSKVKVQIVEGKYFDKPKEEA--R 58 Query: 73 TFDQAADKCWHAIKAKLRTTGERPSRTTRRGEFKRVVLLFGPATMCSAMTVDRFVEVRDW 132 TF + D+ LR +RR ++R V M + + Sbjct: 59 TFRELMDR-------YLR------EHASRRSGYRRYV----------NMVTNLTAHFGNP 95 Query: 133 MLEEPAPARKRGRPRKGEV-GLAPKTINNLLLVAMGILNYAAAKMKLHLPDRPLPPHDLF 191 LE P K G+ P TIN L + N A + + D P+ + Sbjct: 96 KLEHVTPKTIVAYKNKRYADGVTPATINRELALMKKAFNLACREWEW-TKDNPVCRVSME 154 Query: 192 LDETPRSRYLREGPEQERLLEHCGQDLADVIEFDIETGLRWNELAGLTWDDVDPLEESIR 251 + R R+L E+ RLL L +VI F I TGLR E+ LTW VD + Sbjct: 155 RENNTRDRWL-TCEEERRLLAASAPWLQEVIVFAIHTGLRCGEILNLTWAGVDLNRRTAT 213 Query: 252 AYVKGKGHD---PIPHTVFLSERALLILDRRRERAAQSEFVFTTTAEINYAHGELDVEKG 308 + G P+ HT+ + + ++ R R SE VFT+ AH LD Sbjct: 214 VFKSKNGERRTIPLSHTLVQA-----LQNKARGRRMDSELVFTSA-----AHTPLDAPN- 262 Query: 309 AQVPWTYNRMHRQFSVALEDSKIADFGFHDLRRTAARRLWWDS-NLEIAQAFLGHKDPKT 367 + R F +AL+ ++ DF FHDLR T+A R+ +L Q LGHK P Sbjct: 263 ---------LRRSFRLALKHGQVLDFRFHDLRHTSATRMVQAGVDLYKVQRILGHKSPMM 313 Query: 368 TLKY 371 T +Y Sbjct: 314 TQRY 317 >ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii] emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii] Length = 373 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 98/366 (26%), Positives = 158/366 (43%), Gaps = 56/366 (15%) Query: 13 VNVVKVGRIFHYDIMVEGQRERRSTKCTDRDKAIAMARKRKKEMLEEAARLREQDVAIDA 72 + +VK G I+ +I+ +G+R RRST ++R A A+ K K +++E R ++ + Sbjct: 1 MGLVKRGNIWWMNIVFQGKRIRRSTGSSNRALADAIMAKVKVQLIEGQYFERAEEQS--R 58 Query: 73 TFDQAADKCW--HAIKAKLRTTGERPSRTTRRGEFKRVVLLFGPATMCSAMTVDRFVEVR 130 TF + D+ H +K R TG+ KR FG T+ + +T VE + Sbjct: 59 TFAELMDRFEREHLVKLASRQTGQ--------AFLKRFRAFFGDRTL-AEITPKLIVEYK 109 Query: 131 DWMLEEPAPARKRGRPRKGEVGLAPKTINNLLLVAMGILNYAAAKMKLHLPDRPLPPHDL 190 R+ G+ P +IN L + A + + D P+ L Sbjct: 110 S---------------RRSATGVKPASINRELTCLRKAFSLAKREWEW-CRDNPVSRVSL 153 Query: 191 FLDETPRSRYLREGPEQERLLEHCGQDLADVIEFDIETGLRWNELAGLTWDDVDPLEESI 250 T R R+L E E+ RLL+ C L +++ F + +G+R E+ LTW+ VD + Sbjct: 154 EKGATKRDRWLME-DEEARLLDACPSWLRELVVFALHSGMRLGEILSLTWNGVDLFRRTA 212 Query: 251 RAYVKGKGHD----PIPHTVFLSERALLILDRRRERAAQSEFVFTTTAEINYAHGELDVE 306 + + K + P+ TV L+ ++ + R ++ VF + A LD Sbjct: 213 TVF-ESKNEERRTVPLNQTVM-----ALLTEKAKVRHIKTALVFPS-----LAGTRLD-- 259 Query: 307 KGAQVPWTYNRMHRQFSVALEDSKIADFGFHDLRRTAARRLWWDS-NLEIAQAFLGHKDP 365 P N + R A+ + I + FHDLR T A RL +L Q LGHK P Sbjct: 260 -----P---NHLRRALRPAMAKAGIVNCHFHDLRHTFATRLVQAGVDLYKVQRLLGHKSP 311 Query: 366 KTTLKY 371 T +Y Sbjct: 312 LMTQRY 317 >gb|AEH79690.1| site-specific integrase/recombinase [Sinorhizobium meliloti SM11] Length = 380 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 164/385 (42%), Gaps = 29/385 (7%) Query: 22 FHYDIMVEGQRERRSTKCTDRDKAIAMARKRKKEMLEEAARLREQDVAIDATFDQAADKC 81 +H+D V G R ST+ +R +A A K +++ + AA+ + T A + Sbjct: 12 YHFDFQVAGVRYHGSTETANRREAEAR-EKIERDKAKAAAKASKNASGGPLTIAVATGRY 70 Query: 82 WHAIKAKLRTTGERPSRT-TRRGEFKRVVLLFGPATMCSAMTVDRFVEVRDWMLEEPAPA 140 W + GER + + T + R+V FGP + S ++ D ++ W + A Sbjct: 71 WSEV-------GERHANSETTWTDINRLVDYFGPTKLLSDISDDDVAKLVQWRRSQNAWG 123 Query: 141 RKRGRPRKGEVGLAPKTIN-NLLLVAMGILNYAAAKMKLHLPDRPLPPHDLFLDETPRSR 199 R++ + K ++ T+N + LV I A K P P D +L E P+ R Sbjct: 124 REQTKDEKPMRLVSAATVNRSTTLVLKKIFTRAKRTWKYEFPIEP-SWRDHWLQE-PKER 181 Query: 200 YLRE--GPEQERLLEHCGQDLADVIEFDIETGLRWNELAGLTWDDVDPLEESIRAYVKGK 257 +RE E + D + +F TGLR E L W +VD I GK Sbjct: 182 -VRELKATEGAAIELATRSDFQPIFDFVRATGLRLEECI-LRWSEVDWQTGWITK--TGK 237 Query: 258 GHDPIPHTVFLSERALLILDRRRERAAQSEFVFTT------TAEINYAHGELDVEKGAQV 311 G + + + R +L+ R EFVFT T + +Y +KG + Sbjct: 238 GGRMVKTAITSTVRDILLP----LRGHHPEFVFTYQAARTRTGKASYKGDGEGRKKGDRY 293 Query: 312 PWTYNRMHRQFSVALEDSKIADFGFHDLRRTAARRLWWDS-NLEIAQAFLGHKDPKTTLK 370 P TY+ + Q+ +K+ DF FHD R A +L + NL+ Q L H D KTT + Sbjct: 294 PITYSGLKTQWKRIRAKAKVEDFRFHDFRHDLATKLLRKTGNLKTVQKALSHADIKTTTR 353 Query: 371 YLGITKEDEKAAQHVRARKQRERRE 395 Y + E+ A +R +R +R+ Sbjct: 354 YAHVLDEEVAEALESLSRSKRAQRK 378