BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0144.0016.p (710 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004197269.1| SMC domain-containing protein [Geobacter sp.... 597 e-168 ref|YP_003631722.1| SMC domain protein [Planctomyces limnophilus... 562 e-158 ref|ZP_01066288.1| predicted ATP-dependent endonuclease, OLD fam... 552 e-155 ref|YP_458467.1| ATP-dependent endonuclease, OLD family protein ... 258 2e-66 ref|YP_001371677.1| ATP-dependent endonuclease, OLD family prote... 241 2e-61 >ref|YP_004197269.1| SMC domain-containing protein [Geobacter sp. M18] gb|ADW11993.1| SMC domain protein [Geobacter sp. M18] Length = 637 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 300/645 (46%), Positives = 420/645 (65%), Gaps = 10/645 (1%) Query: 66 MRIQSVRIKNLRAYQDETVEFDSYTCLVGANGAGKSTVLCALNIFFREIENTSTNLSNLD 125 M+I+SVRIKN R Y DET+ FD+YTCLVG NGAGKST+L ALN+FFR+ +++ T+LS L Sbjct: 1 MKIESVRIKNFRGYADETIFFDNYTCLVGPNGAGKSTILSALNVFFRQYKDSKTDLSKLS 60 Query: 126 KEDFHRGNVDEPIEITVTFADLSREAQEAFADYYRQGVLMVTARADYDPASGAATVKQYG 185 EDFH NVDEPIEITVTF +LS A+ +DY RQ L+V++ A YD A+ A VKQ+G Sbjct: 61 IEDFHHKNVDEPIEITVTFTELSDAAKTELSDYVRQDKLIVSSVARYDSATERAEVKQFG 120 Query: 186 NRLAMEEFAPYFKRNGDGAKADELKAAYAALRQQFTDLPAGAKTKGDMADALRAYEAERV 245 NRL E F YF+ + G A +LK YA + F++LP+ AKTK DMA+ALR YE++ Sbjct: 121 NRLGFEGFKQYFEADKSGVSAADLKNIYAGFQSVFSELPS-AKTKQDMANALRLYESQHP 179 Query: 246 DQCKPIPSEDQFYGATHGQGRLREFVQWVYVPAVKDAAGEQAEAKNTALGRLLARTVRSQ 305 +C IPSEDQFYGA+ G RL VQWV++ A KD + E E KN+ALG+LLART+RS+ Sbjct: 180 GKCVLIPSEDQFYGASKGTSRLAPHVQWVFISADKDVSEESDETKNSALGQLLARTIRSK 239 Query: 306 VNFSDRLIELRAQAEANYREMLALQQGTLDDISRDLQNRLAEWSHPEATAKLQWHQDPKS 365 VNF+D++ +LR +Y+ +L +Q LD++S L RL W+HP ATA++ W QDP Sbjct: 240 VNFADKVSKLRDDIRRDYQAILDGEQPLLDELSVSLGIRLKNWAHPNATAQILWKQDPDK 299 Query: 366 SIRIEEPVARLLAGDGEFEGSIARFGHGMQRSYIIALLQGLS-VADAAGPRLLLGIEEPE 424 S+++EEP A + G+ FEG + RFGHG+QRSY++ LLQ LS V DA P L++GIEEPE Sbjct: 300 SVKVEEPWAYIKLGERGFEGDLTRFGHGLQRSYLLTLLQVLSEVDDANAPTLIMGIEEPE 359 Query: 425 LYQHPPQARHLASVLQELSRNGAQVIASTHSPYFVDGTTFERVRLVRKRRNEGRATVHSC 484 +YQHPPQA++LA V+ +LS G+QVIA +HSP F+ FE +R+VR++ V Sbjct: 360 IYQHPPQAKYLAEVMHDLSETGSQVIACSHSPLFIPCDHFESIRIVREKGAPAATYVSQL 419 Query: 485 SVDRLGQRYAAVTGDRPTAQEGVLAKLHQVMQPHLSEMFFTPKLILVEGLEDAAYINAWM 544 + L Q G + + G+LAKL+ + P ++EMFF LILVEG+ED AYI A++ Sbjct: 420 TYKDLSQCLKD-AGQKHLKEAGMLAKLYPALNPVINEMFFCKTLILVEGIEDVAYITAYL 478 Query: 545 VLSERWESFRARGAHIVAVNGKSELIRPLIIAQQLQIPTFVIFDCDGDKLTHNNPDQQRS 604 +L+ + + FR G HIV V GKSE+++PL +A+ L IP +V+ D D +K ++ S Sbjct: 479 MLNGKMKDFRKHGCHIVPVGGKSEIVKPLSMAKLLDIPVYVVCDADTNK-------EKES 531 Query: 605 IEASHRRDNSALFHLAGMQQQDPFPTDAVWSESLVAWPHDLGKCVEVDAGAHWQPAGSRA 664 H+ DN A+ L G +P + + +L W ++ +E + GA W ++ Sbjct: 532 EITKHKIDNKAILKLLGHDAVSEWPAETLRLGNLTMWQTNITHFIETEIGAEWSKYVDKS 591 Query: 665 SANYGNVSGLKKNTLHIGARLKELQNLRANTATLDRLCETILTFA 709 +A YGN GL+KN L + L+ N +++L +L E I+ FA Sbjct: 592 AAYYGNPGGLQKNPLAVSYALEAAWNAGLKSSSLVKLVEDIVAFA 636 >ref|YP_003631722.1| SMC domain protein [Planctomyces limnophilus DSM 3776] gb|ADG69523.1| SMC domain protein [Planctomyces limnophilus DSM 3776] Length = 653 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 282/651 (43%), Positives = 405/651 (62%), Gaps = 16/651 (2%) Query: 66 MRIQSVRIKNLRAYQDETVEFDSYTCLVGANGAGKSTVLCALNIFFREIENTSTNLSNLD 125 M+I VRI+N R+++DETV FD+YTC VG+NG+GKST+L ALN+FFR ++ T++ NL Sbjct: 1 MKISQVRIQNFRSFRDETVHFDNYTCFVGSNGSGKSTILMALNVFFRNSSSSVTDVVNLG 60 Query: 126 KEDFHRGNVDEPIEITVTFADLSREAQEAFADYYRQGVLMVTARADYDPASGAATVKQYG 185 EDFH + +PI IT+TF L+ EA + YYRQG L ++A+A ++ + A V+Q+G Sbjct: 61 AEDFHHRDTSKPIVITLTFTCLTAEAIDDLGLYYRQGQLTISAKAIWNEKTSYAEVRQFG 120 Query: 186 NRLAMEEFAPYFKRNGDGAKADELKAAYAALRQQFTDLPAGAKTKGDMADALRAYEAERV 245 R+ ME+F+PYFK + +G KA ELK Y +++ +++LP A T ALRAYE Sbjct: 121 QRMVMEDFSPYFKADEEGKKAAELKQIYDDIQKTYSELP-NATTGPSRVAALRAYEESHP 179 Query: 246 DQCKPIPSEDQFYGATHGQGRLREFVQWVYVPAVKDAAGEQAEAKNTALGRLLARTVRSQ 305 + C I S QF+G T G L +++QWVY+PAVK+A+ EQ E TALG+L R++R++ Sbjct: 180 ELCSLIESAHQFFGFTKGSNLLSKYIQWVYIPAVKEASTEQEEGSKTALGQLFQRSIRTK 239 Query: 306 VNFSDRLIELRAQAEANYREMLALQQGTLDDISRDLQNRLAEWSHPEATAKLQWHQDPKS 365 V+F + + LR E YRE+L ++ LD++S ++Q RL EW++P A +L W+ DP Sbjct: 240 VSFKESIARLRNGLEKQYRELLDSEKSALDELSGNIQERLREWANPNANLQLSWYFDPNK 299 Query: 366 SIRIEEPVARLLAGDGEFEGSIARFGHGMQRSYIIALLQGLSVADA-AGPRLLLGIEEPE 424 ++ ++EPVAR G+ F G +AR GHGMQR++++ALL L++ +GP L+LG+EEPE Sbjct: 300 TVVVQEPVARASLGEDNFIGEVARLGHGMQRAFLVALLHELAMGGGESGPTLILGMEEPE 359 Query: 425 LYQHPPQARHLASVLQELSRN---GAQVIASTHSPYFVDGTTFERVRLVRKRRNEGRATV 481 LYQHP QA H+A VLQELS + +QV+ STHSPYFV FE VR+VRK ++ + V Sbjct: 360 LYQHPSQAMHIADVLQELSESVSTNSQVMISTHSPYFVSARGFENVRVVRKHSHDKCSLV 419 Query: 482 HSCSVDRLGQRYAAVTGDRPTAQEGVLAKLHQVMQPHLSEMFFTPKLILVEGLEDAAYIN 541 S S A+ G +P V+ L Q+MQP L EM+F+ +LVEG+ED A+I Sbjct: 420 ASTSFVEYENAIASALGAKPDLPSVVMTSLEQIMQPSLREMYFSKFAVLVEGVEDVAFIA 479 Query: 542 AWMVLSERWESFRARGAHIVAVNGKSELIRPLIIAQQLQIPTFVIFDCDGDKLTHNNPDQ 601 + ++ RW FR G H V GKS L RP++I+QQL IP F +FD DGD Sbjct: 480 THLKVTNRWRDFRKYGCHFVVAIGKSNLSRPIVISQQLCIPYFAVFDTDGD--------- 530 Query: 602 QRSIEASHRRDNSALFHLAGMQQQDPFPTDAVWSESLVAWPHDLGKCVEVDAG-AHWQPA 660 +S H RDN LF L G FP D V+ + V WP + + V+ D G + W+ A Sbjct: 531 DKSNRKGHERDNKCLFALLGFPDHPSFPKDIVFKDEFVCWPKCIFESVKSDFGESVWEAA 590 Query: 661 GSRASANYGNVSGLK-KNTLHIGARLKELQNLRANTATLDRLCETILTFAN 710 +A G + G++ KNT+ I A L+EL ++ L LC+ +L A+ Sbjct: 591 EKQARKRRGYIDGVRQKNTMLITAVLEELSESGKVSSVLTTLCDRMLVRAS 641 >ref|ZP_01066288.1| predicted ATP-dependent endonuclease, OLD family protein [Vibrio sp. MED222] gb|EAQ52364.1| predicted ATP-dependent endonuclease, OLD family protein [Vibrio sp. MED222] Length = 651 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 277/637 (43%), Positives = 408/637 (64%), Gaps = 22/637 (3%) Query: 66 MRIQSVRIKNLRAYQDETVEFDSYTCLVGANGAGKSTVLCALNIFFREIENTSTNLSNLD 125 M+I+S+R+KN R+++DET+ D Y+C VG+NGAGKSTV+ ALN+FFR+ ++ T+LS L Sbjct: 1 MKIESIRVKNFRSFKDETILLDDYSCFVGSNGAGKSTVMNALNVFFRQFRDSKTDLSKLS 60 Query: 126 KEDFHRGNVDEPIEITVTFADLSREAQEAFADYYRQGVLMVTARADYDPASGAATVKQYG 185 KEDFH N PIEITVTF LS EA+ ADY RQG L+VTA+A+YDPA+ A VKQYG Sbjct: 61 KEDFHHKNTQLPIEITVTFNSLSAEAKSDLADYVRQGKLIVTAKAEYDPATERADVKQYG 120 Query: 186 NRLAMEEFAPYFKRNGDGAKADELKAAYAALRQQFTDLPAGAKTKGDMADALRAYEAERV 245 NR+ + F+ +F N AK ELKA Y L+ F+ L A KTKGDM AL YEA+ Sbjct: 121 NRMVISGFSAWFDANKQKAKVPELKAIYQNLKNTFSGL-ADVKTKGDMEVALHDYEAKNP 179 Query: 246 DQCKPIPSEDQFYGATHGQGRLREFVQWVYVPAVKDAAGEQAEAKNTALGRLLARTVRSQ 305 C +PSEDQFYGA+ G ++ +++WV+V A KD + E + K +AL +LL R + ++ Sbjct: 180 QLCTLVPSEDQFYGASKGANKIAPYLEWVFVSASKDFSEEAEQTKGSALDQLLNRVLGTK 239 Query: 306 VNFSDRLIELRAQAEANYREMLALQQGTLDDISRDLQNRLAEWSHPEATAKLQWHQDPKS 365 V F D++ +L+ + +Y++ML +Q L +IS L +L +WS+P+A+A++ W++DP+ Sbjct: 240 VTFKDKVSQLKEEYRISYKKMLEEEQPALQEISDSLGIKLKKWSNPDASAQIVWNEDPEK 299 Query: 366 SIRIEEPVARLLAGDGEFEGSIARFGHGMQRSYIIALLQGLSVADAA-GPRLLLGIEEPE 424 S++IEEP A ++ + FEG ++RFGHGMQRSY++++LQ LS A+ A P L++ +EEPE Sbjct: 300 SVKIEEPKALVVISEKGFEGELSRFGHGMQRSYLLSVLQELSDANTAKSPTLVIAVEEPE 359 Query: 425 LYQHPPQARHLASVLQELSRNGAQVIASTHSPYFVDGTTFERVRLVRKRRNEGRATVHSC 484 LYQHPPQAR+LA +LQEL + +QV+ THSPYF+ FE +R+VR+ + V S Sbjct: 360 LYQHPPQARYLAQLLQEL--DDSQVMVCTHSPYFIPVERFEDLRVVREEGVPCESKVKSV 417 Query: 485 SVDRLGQRYAAVTGDRPTAQEGVLAKLHQVMQPHLSEMFFTPKLILVEGLEDAAYINAWM 544 + +L +G + G+LAKL+ ++P ++EMFF KLILVEG+ED AYI ++ Sbjct: 418 TYKKLSDTLHG-SGQVLLRETGMLAKLYPNLKPEINEMFFCKKLILVEGIEDVAYIRTYI 476 Query: 545 VLSERWESFRARGAHIVAVNGKSELIRPLIIAQQLQIPTFVIFDCDGDKLTHNNPDQQRS 604 L + + FR G HI+ V GKSEL++P+ + + L I +V+ D D +K Sbjct: 477 ELMGKTDEFRLGGFHIIPVGGKSELLKPIALTKHLGIDVYVVCDADTNKTVEGEV----- 531 Query: 605 IEASHRRDNSALFHLAGMQQQDPFPTDAVWSESLVAWPHDLGKCVEVDAGAHWQPAGSRA 664 H++DN+++ HL G + + + +L W H++ + + G W+ +A Sbjct: 532 --VKHKKDNASILHLLGHDKALHWSEETHRFSNLTMWTHNITVTIGPEFGPKWKGFEDKA 589 Query: 665 SANYGNVSGLKKNTLHI----------GARLKELQNL 691 +A+YGN GLKKN L + G R +ELQNL Sbjct: 590 AAHYGNAKGLKKNPLAVSKALIEAWYSGCRSQELQNL 626 >ref|YP_458467.1| ATP-dependent endonuclease, OLD family protein [Erythrobacter litoralis HTCC2594] gb|ABC63670.1| predicted ATP-dependent endonuclease, OLD family protein [Erythrobacter litoralis HTCC2594] Length = 654 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 197/637 (30%), Positives = 321/637 (50%), Gaps = 64/637 (10%) Query: 66 MRIQSVRIKNLRAYQDETVEFDSYTCLVGANGAGKSTVLCALNIFFREIENTSTNLSNLD 125 MR+++V IKN RA + + D T L+G+NG GKS VL A++ FF + S + Sbjct: 1 MRLETVYIKNFRAISELEINIDDVTTLIGSNGVGKSCVLKAIDKFF-------SKSSAVT 53 Query: 126 KEDFHRGNVDEPIEITVTFADLSREAQEAFADYYRQGVLMVTARADYDPASGAATVKQYG 185 EDFH GNV +PIEI ++F +L + E +A G L + R + G + +G Sbjct: 54 LEDFHDGNVSDPIEIGLSFTELQADELERYAARVHGGTLRIV-RVFRSSSLGRENGRYFG 112 Query: 186 NRLAMEEFAPYFKRNGDGAKADELKAAYAALRQQFTDLPAGAKTKGDMADALRA---YEA 242 + F RN A++ K+AY AL + D P K +ADAL A +E Sbjct: 113 FAYRHQAFDEV--RN--LPTANDQKSAYNALTET-GDFPGLTKCT-RIADALTAMSEWEE 166 Query: 243 ERVDQCKPIPSEDQFYG-ATHGQGRLREFVQWVYVPAVKDAAGEQAEAKNTALGRLLART 301 D C + QF G A +G L+ FV +V++PAV+DA+ + ++K +G+LL Sbjct: 167 NNSDNCVLAMDDGQFEGFANVARGGLQRFVSFVFIPAVRDASIDAVDSKKAVIGQLLELY 226 Query: 302 VRSQVNFSDRLIELRAQAEANYREMLALQQ-GTLDDISRDLQNRLAEWSHPEATAKLQWH 360 VR+ + + E + + + Y+++++ + G LD++S L + L + + E+ +L W Sbjct: 227 VRTILQAKKEIKEFQTEMDERYKDLVSPENIGELDELSGLLTSTLTNF-YGESEVELNWK 285 Query: 361 QDPKSSIRIEEPVARLLAGDGEFEGSIARFGHGMQRSYIIALLQGLSVA----------- 409 + + + P A L + ++G + GHG+QR++I +LQ L++A Sbjct: 286 E--VEPLPLPLPSAETLLTEQGYKGPVEGKGHGLQRAFIFTILQHLALALHDTEQDSGEE 343 Query: 410 -DAAGP---RLLLGIEEPELYQHPPQARHLASVLQELS----RNGA---QVIASTHSPYF 458 GP ++L IEEPELYQHP + RH A VL+ LS GA Q+I +HSP+F Sbjct: 344 ESEDGPTSHSIILAIEEPELYQHPTKQRHFAEVLRNLSDLDAHKGAQSVQLILCSHSPHF 403 Query: 459 VDGTTFERVRLVRKRRNE---GRATVHSCSVDRLGQRYAAVTGD--RPTAQEGVLAKLHQ 513 + FE +R++ + +E +TV S + + A V+ D + E + +LH Sbjct: 404 LATDRFEEIRVIHRSLDEDEKSTSTVSQVSYQHVVDQLAGVSEDPEKHLNPEALKVRLH- 462 Query: 514 VMQPHLSEMFFTPKLILVEGLEDAAYINAWMVLSERWESFRARGAHIVAVNGKSELIRPL 573 + P ++E FF K++LVEG D A + A +S++ SF A G ++ V GK+ L +PL Sbjct: 463 TLTPLVAEGFFASKVVLVEGTSDVAALRAAARMSDK--SFEASGIALIEVGGKTNLDKPL 520 Query: 574 IIAQQLQIPTFVIFDCDGDKLTHNNPDQQRSIEASHRRDNSALFHLAGMQQQDPFPTDAV 633 II + L IP FV+FD DG H D ++ N + L G + +P Sbjct: 521 IIFRSLGIPIFVLFDSDG----HKTKDHEKKAHV-----NVQIQKLMG--ESNPEEVRTY 569 Query: 634 WSESLVAWPHDLGKCVEVDAGAH-WQPAGSRASANYG 669 ++ +LG+ ++ + GA+ + A +A +YG Sbjct: 570 VCPQFASFETELGRHLKAEIGANLFDEAVGKAGYDYG 606 >ref|YP_001371677.1| ATP-dependent endonuclease, OLD family protein [Ochrobactrum anthropi ATCC 49188] gb|ABS15848.1| ATP-dependent endonuclease, OLD family protein [Ochrobactrum anthropi ATCC 49188] Length = 681 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 181/579 (31%), Positives = 286/579 (49%), Gaps = 84/579 (14%) Query: 66 MRIQSVRIKNLRAYQDETVEFDSYTCLVGANGAGKSTVLCALNIFFREIENTSTNLSNLD 125 M+++ RI+N R+ +D V F ++T L+G NGAGKS++L A+ F+ + N D Sbjct: 1 MQLERARIRNFRSLRDVEVVFGAHTALIGGNGAGKSSILKAIEKFY-------STTKNCD 53 Query: 126 KEDFHRGNVDEPIEITVTFADLSREAQEAFADYYRQGVLMVTARADYDPASGAATVKQYG 185 +DF + +PIEI +TF LS + AF D R G L+VT D P+SG + +G Sbjct: 54 ADDFFGRDQGQPIEIELTFHQLSEQEAAAFEDRVRDGRLVVTRIFDGGPSSG----RYHG 109 Query: 186 NRLAMEEFAPYFKRNGDGAKADELKAAYAALRQQ---FTDLPAGAKTKGDMADALRAYEA 242 + +F + K +AAY ALR+ + DLP A + + A+ +EA Sbjct: 110 VVPQIPDFVAVRAHSAATPK----RAAYNALRENNPLYADLPT-AGSAAAVDQAMLTWEA 164 Query: 243 ERVDQCKPIPSEDQFYG-ATHGQGRLREFVQWVYVPAVKDAAGEQAEAKNTALGRLLART 301 E DQ +P + QF+G + +G+L++ +V++PAV+DA+ + A+ K + +G+LL Sbjct: 165 EHPDQLVLLPDDGQFFGFQNNSRGKLQQHTSFVFIPAVRDASADAADGKTSVIGKLLELL 224 Query: 302 VRSQVNFSDRLIELRAQAEANYREMLALQQ--------GTLDDISRDLQNRLAEWSHPEA 353 VRSQ+ + +AQ Y+ +++ + GTL R L + +A Sbjct: 225 VRSQILQRPDVQAFKAQLTEAYQALVSAENMPELGALAGTLTADLRGL--------YQDA 276 Query: 354 TAKLQWHQDPKSSIRIEEPVARLLAGDGEFEGSIARFGHGMQRSYIIALLQGLSV----- 408 L W + + + P+A + D F G + R GHG+QR++I LLQ L+ Sbjct: 277 EVSLAWRE--VGEMPVPLPMADVFLKDEGFGGPVDRQGHGLQRAFIFTLLQHLARTAVPE 334 Query: 409 -------ADAAG----------------PRLLLGIEEPELYQHPPQARHLASVLQELS-- 443 +D G P L+L IEEPELYQHP + RH A VL+ LS Sbjct: 335 GDEAPPDSDVDGSDDAPAAAAAAVMAQAPTLILAIEEPELYQHPTKQRHFAEVLRGLSSG 394 Query: 444 -----RNGAQVIASTHSPYFVDGTTFERVRLVRKRRNEGRATVHSCSVDRLGQRYAAVTG 498 + QVI +HSP F+ + +RL R R + + CS+ L A Sbjct: 395 TLPGAQGHTQVIFGSHSPMFISMGKADEIRLTR-RSHCDDSEFKQCSLQALDLGTVAQKL 453 Query: 499 DR-------PTAQEGVLAKLHQVMQPHLSEMFFTPKLILVEGLEDAAYINAWMVLSERWE 551 +R + + ++ +LH ++ L+E FF +ILVEG D A + A + Sbjct: 454 ERGWNKPAGTFSAQTLMPRLH-ILGAELAEGFFATGVILVEGRSDKAALTATARM--LGV 510 Query: 552 SFRARGAHIVAVNGKSELIRPLIIAQQLQIPTFVIFDCD 590 +F A G I++ GK+ L RP +I ++L IPTF+++DCD Sbjct: 511 NFEAAGIAILSTEGKANLDRPYVIFRELGIPTFMLWDCD 549