BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0144.0012.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_530048.1| 50S ribosomal protein L27 [Rhodopseudomonas pal...   171   5e-41
ref|YP_483869.1| 50S ribosomal protein L27 [Rhodopseudomonas pal...   169   2e-40
ref|NP_767061.1| 50S ribosomal protein L27 [Bradyrhizobium japon...   168   2e-40
ref|YP_004106857.1| 50S ribosomal protein L27 [Rhodopseudomonas ...   168   3e-40
ref|ZP_07028656.1| ribosomal protein L27 [Afipia sp. 1NLS2] >gi|...   166   1e-39

>ref|YP_530048.1| 50S ribosomal protein L27 [Rhodopseudomonas palustris BisB18]
 sp|Q21D07.1|RL27_RHOPB RecName: Full=50S ribosomal protein L27
 gb|ABD85729.1| LSU ribosomal protein L27P [Rhodopseudomonas palustris BisB18]
          Length = 90

 Score =  171 bits (432), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/88 (94%), Positives = 86/88 (97%)

Query: 1  MAHKKAGGSSRNGRDSKGKRLGIKAFGGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60
          MAHKKAGGSSRNGRDS GKRLGIKA+GGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF
Sbjct: 1  MAHKKAGGSSRNGRDSAGKRLGIKAYGGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60

Query: 61 AKVEGHVEFRAKANGRTFVSVIPMAEAA 88
          AKVEGHVEFRAKANGRTFVSV+P+A AA
Sbjct: 61 AKVEGHVEFRAKANGRTFVSVLPIAVAA 88


>ref|YP_483869.1| 50S ribosomal protein L27 [Rhodopseudomonas palustris HaA2]
 sp|Q2J3K2.1|RL27_RHOP2 RecName: Full=50S ribosomal protein L27
 gb|ABD04958.1| LSU ribosomal protein L27P [Rhodopseudomonas palustris HaA2]
          Length = 89

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/89 (92%), Positives = 86/89 (96%)

Query: 1  MAHKKAGGSSRNGRDSKGKRLGIKAFGGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60
          MAHKKAGGSSRNGRDS GKRLGIKA+GGE VIPGNIIARQRGTTWHPGLNVGMGTDHTLF
Sbjct: 1  MAHKKAGGSSRNGRDSAGKRLGIKAYGGEHVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60

Query: 61 AKVEGHVEFRAKANGRTFVSVIPMAEAAE 89
          AKVEG VEFRAKANGRTFVSV+P+A+AAE
Sbjct: 61 AKVEGRVEFRAKANGRTFVSVLPIAQAAE 89


>ref|NP_767061.1| 50S ribosomal protein L27 [Bradyrhizobium japonicum USDA 110]
 sp|Q89X93.1|RL27_BRAJA RecName: Full=50S ribosomal protein L27
 dbj|BAC45686.1| 50S ribosomal protein L27 [Bradyrhizobium japonicum USDA 110]
          Length = 89

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/89 (92%), Positives = 86/89 (96%)

Query: 1  MAHKKAGGSSRNGRDSKGKRLGIKAFGGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60
          MAHKKAGGSSRNGRDSKGKRLGIKAFGGE VIPGNIIARQRGTTWHPGLNVGMGTDHTLF
Sbjct: 1  MAHKKAGGSSRNGRDSKGKRLGIKAFGGEVVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60

Query: 61 AKVEGHVEFRAKANGRTFVSVIPMAEAAE 89
          AK+EG V F+AKANGRTFVSV+P+AEAAE
Sbjct: 61 AKIEGRVTFQAKANGRTFVSVLPIAEAAE 89


>ref|YP_004106857.1| 50S ribosomal protein L27 [Rhodopseudomonas palustris DX-1]
 gb|ADU42124.1| ribosomal protein L27 [Rhodopseudomonas palustris DX-1]
          Length = 90

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 83/90 (92%), Positives = 87/90 (96%), Gaps = 1/90 (1%)

Query: 1  MAHKKAGGSSRNGRDSKGKRLGIKAFGGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60
          MAHKKAGGSSRNGRDS GKRLGIKAFGGERVIPGNIIARQRGT WHPGLNVGMGTDHTLF
Sbjct: 1  MAHKKAGGSSRNGRDSAGKRLGIKAFGGERVIPGNIIARQRGTQWHPGLNVGMGTDHTLF 60

Query: 61 AKVEGHVEFRAKANGRTFVSVIPMA-EAAE 89
          AKVEGHVEFRAKANGRT+VSV+P+A +AAE
Sbjct: 61 AKVEGHVEFRAKANGRTYVSVLPIAMQAAE 90


>ref|ZP_07028656.1| ribosomal protein L27 [Afipia sp. 1NLS2]
 gb|EFI50079.1| ribosomal protein L27 [Afipia sp. 1NLS2]
          Length = 89

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/89 (92%), Positives = 84/89 (94%)

Query: 1  MAHKKAGGSSRNGRDSKGKRLGIKAFGGERVIPGNIIARQRGTTWHPGLNVGMGTDHTLF 60
          MAHKKAGGSSRNGRDS GKRLGIKAFGGE VIPGNIIARQRGTTWHPG NVGMGTDHTLF
Sbjct: 1  MAHKKAGGSSRNGRDSAGKRLGIKAFGGEIVIPGNIIARQRGTTWHPGANVGMGTDHTLF 60

Query: 61 AKVEGHVEFRAKANGRTFVSVIPMAEAAE 89
          AK EG VEFRAKANGRTFVSV+P+AEAAE
Sbjct: 61 AKAEGRVEFRAKANGRTFVSVVPVAEAAE 89