BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0144.0002.p (160 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767072.1| rRNA large subunit methyltransferase [Bradyrhiz... 258 2e-67 ref|YP_483878.1| hypothetical protein RPB_0256 [Rhodopseudomonas... 247 3e-64 ref|YP_530058.1| rRNA large subunit methyltransferase [Rhodopseu... 245 1e-63 ref|YP_001236608.1| rRNA large subunit methyltransferase [Bradyr... 245 1e-63 ref|YP_001202620.1| rRNA large subunit methyltransferase [Bradyr... 243 7e-63 >ref|NP_767072.1| rRNA large subunit methyltransferase [Bradyrhizobium japonicum USDA 110] sp|Q89X82.1|RLMH_BRAJA RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH dbj|BAC45697.1| blr0432 [Bradyrhizobium japonicum USDA 110] Length = 160 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 126/160 (78%), Positives = 140/160 (87%) Query: 1 MRLVVICIGRLKQGPERELAERYRERFEDIGRKLGFRGLEIHEIAESRARDTAARIAEEA 60 MR+ VI +GRLKQGPERELA+RY ERF++ GRKLGFR L IHEI ESRARD A R+AEEA Sbjct: 1 MRVAVIAVGRLKQGPERELADRYFERFDEAGRKLGFRELSIHEIPESRARDAATRMAEEA 60 Query: 61 AAISALLPEKHALVALDERGKSIDSASFARQLGRWRDEGTAHTVFVIGGADGLSPELQRK 120 AAI A +P+K LVALDERG+++DS FAR LGRWRDEG HT+FVIGGADGLSPEL+RK Sbjct: 61 AAIGAYIPDKSILVALDERGQNLDSTVFARHLGRWRDEGAGHTIFVIGGADGLSPELRRK 120 Query: 121 ALLRIAFGSATWPHQMVRVMLLEQIYRAATILAGHPYHRA 160 A L IAFGSATWPHQMVRVMLLEQ+YRAATILAGHPYHRA Sbjct: 121 AKLAIAFGSATWPHQMVRVMLLEQLYRAATILAGHPYHRA 160 >ref|YP_483878.1| hypothetical protein RPB_0256 [Rhodopseudomonas palustris HaA2] sp|Q2J3J3.1|RLMH_RHOP2 RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH gb|ABD04967.1| Protein of unknown function DUF163 [Rhodopseudomonas palustris HaA2] Length = 160 Score = 247 bits (631), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 128/160 (80%), Positives = 144/160 (90%) Query: 1 MRLVVICIGRLKQGPERELAERYRERFEDIGRKLGFRGLEIHEIAESRARDTAARIAEEA 60 MRL VI +G+LKQGPERELAERYR RF+DIGRKLGFRGL+IHEI+ESRARD A R+AEEA Sbjct: 1 MRLTVIAVGKLKQGPERELAERYRARFDDIGRKLGFRGLDIHEISESRARDAATRMAEEA 60 Query: 61 AAISALLPEKHALVALDERGKSIDSASFARQLGRWRDEGTAHTVFVIGGADGLSPELQRK 120 AAI+AL+P+ ALV LDERGKS+DSA+FA QLGRWRDE T+FVIGGADGL PEL+RK Sbjct: 61 AAIAALVPDGGALVTLDERGKSVDSAAFAAQLGRWRDESVPGTIFVIGGADGLLPELRRK 120 Query: 121 ALLRIAFGSATWPHQMVRVMLLEQIYRAATILAGHPYHRA 160 A L ++FG+ATWPHQMVRVMLLEQIYRAATILAGHPYHRA Sbjct: 121 AKLCLSFGAATWPHQMVRVMLLEQIYRAATILAGHPYHRA 160 >ref|YP_530058.1| rRNA large subunit methyltransferase [Rhodopseudomonas palustris BisB18] sp|Q21CZ7.1|RLMH_RHOPB RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH gb|ABD85739.1| protein of unknown function DUF163 [Rhodopseudomonas palustris BisB18] Length = 160 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 127/160 (79%), Positives = 143/160 (89%) Query: 1 MRLVVICIGRLKQGPERELAERYRERFEDIGRKLGFRGLEIHEIAESRARDTAARIAEEA 60 MR+VVI IGRLKQGPERELAERYRERF+D+GRKLGFRG EIHEI ESRARD RIAEEA Sbjct: 1 MRVVVIAIGRLKQGPERELAERYRERFDDLGRKLGFRGPEIHEIGESRARDAPTRIAEEA 60 Query: 61 AAISALLPEKHALVALDERGKSIDSASFARQLGRWRDEGTAHTVFVIGGADGLSPELQRK 120 AAI+AL+P+K LV LDERG S+DSA FAR+LG WRD+ TA +FVIGGADGLSPEL+RK Sbjct: 61 AAIAALIPDKAVLVTLDERGDSLDSAGFARKLGGWRDQSTAQAIFVIGGADGLSPELRRK 120 Query: 121 ALLRIAFGSATWPHQMVRVMLLEQIYRAATILAGHPYHRA 160 A L ++FG+ATWPHQMVRVMLLEQ+YRAATIL+GHPYHRA Sbjct: 121 AKLSVSFGAATWPHQMVRVMLLEQLYRAATILSGHPYHRA 160 >ref|YP_001236608.1| rRNA large subunit methyltransferase [Bradyrhizobium sp. BTAi1] sp|A5E958.1|RLMH_BRASB RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH gb|ABQ32702.1| hypothetical protein BBta_0416 [Bradyrhizobium sp. BTAi1] Length = 160 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 122/160 (76%), Positives = 142/160 (88%) Query: 1 MRLVVICIGRLKQGPERELAERYRERFEDIGRKLGFRGLEIHEIAESRARDTAARIAEEA 60 MR+VVI +GRLKQGPERELAERYRERF+D+GRKLGFRGL++HE+ ESRARD A RI+EEA Sbjct: 1 MRIVVIAVGRLKQGPERELAERYRERFDDLGRKLGFRGLDLHELPESRARDAATRISEEA 60 Query: 61 AAISALLPEKHALVALDERGKSIDSASFARQLGRWRDEGTAHTVFVIGGADGLSPELQRK 120 AAI+AL+P + LV LDERG++IDSAS A Q+GRWRDEG VFVIGGADGLSPEL+R+ Sbjct: 61 AAIAALIPGRSVLVCLDERGQNIDSASLAAQIGRWRDEGVPAAVFVIGGADGLSPELRRR 120 Query: 121 ALLRIAFGSATWPHQMVRVMLLEQIYRAATILAGHPYHRA 160 A L +AFG+ATWPHQ+VRV+L EQIYR ATILAGHPYHRA Sbjct: 121 AKLGVAFGAATWPHQIVRVLLFEQIYRTATILAGHPYHRA 160 >ref|YP_001202620.1| rRNA large subunit methyltransferase [Bradyrhizobium sp. ORS 278] sp|A4YKE8.1|RLMH_BRASO RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH emb|CAL74374.1| conserved hypothetical protein YbeA [Bradyrhizobium sp. ORS 278] Length = 162 Score = 243 bits (620), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 127/160 (79%), Positives = 142/160 (88%) Query: 1 MRLVVICIGRLKQGPERELAERYRERFEDIGRKLGFRGLEIHEIAESRARDTAARIAEEA 60 MRLVVI IGRLKQGPER+LAERYRERF+DIGRKLGFRGL+IHEI ESRARD A R+AEEA Sbjct: 3 MRLVVIAIGRLKQGPERQLAERYRERFDDIGRKLGFRGLDIHEIPESRARDAATRMAEEA 62 Query: 61 AAISALLPEKHALVALDERGKSIDSASFARQLGRWRDEGTAHTVFVIGGADGLSPELQRK 120 AAI+A +P+ LV LDERG +IDSA+FA +GRWRDEG A T FVIGGADGLSPEL+RK Sbjct: 63 AAIAAAIPDNSMLVCLDERGHNIDSATFAGHIGRWRDEGVAATAFVIGGADGLSPELRRK 122 Query: 121 ALLRIAFGSATWPHQMVRVMLLEQIYRAATILAGHPYHRA 160 A L +AFG+ATWPHQ+VRV+LLEQIYR ATILAGHPYHRA Sbjct: 123 AKLGVAFGAATWPHQIVRVLLLEQIYRTATILAGHPYHRA 162