BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0143.0067.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001640988.1| hypothetical protein Mext_3534 [Methylobacte...    65   3e-09
ref|YP_004359736.1| hypothetical protein bgla_1g10970 [Burkholde...    45   0.004
ref|ZP_04578334.1| conserved hypothetical protein [Oxalobacter f...    43   0.013
ref|YP_001210242.1| BcepGomrgp22 [Burkholderia phage BcepGomr] >...    39   0.26 
ref|YP_420886.1| hypothetical protein amb1523 [Magnetospirillum ...    39   0.36 

>ref|YP_001640988.1| hypothetical protein Mext_3534 [Methylobacterium extorquens PA1]
 gb|ABY31917.1| hypothetical protein Mext_3534 [Methylobacterium extorquens PA1]
          Length = 1438

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 66/129 (51%), Gaps = 6/129 (4%)

Query: 1   VSHAAGCDARGDTFDYRFTTAVAVPDALNKILAPSRAQHFWLGDTVSI--DARRVARRAD 58
           V HA   DA G TFD+RFT    + D L  +L   RA    +GD ++I  D  RV  R  
Sbjct: 489 VRHATLWDALGHTFDHRFTEVQNLDDVLETVLKAGRAFPAPVGDKLTITRDEPRVLPRML 548

Query: 59  HT-ADRSRDRAGFDAGQFDHA-RRAVVVEYVDESTWRPAQVQYPPDSDTVKSVNAEAKRV 116
            T  D  RD    D    D A    +V EYVDE+TWR A+V   PD  T+  +     ++
Sbjct: 549 FTDNDILRDTLEIDYALSDEAWADGMVGEYVDETTWRLAEVSSAPDGVTL--LKPARVQL 606

Query: 117 DGIVNRDQA 125
           +G+VNR QA
Sbjct: 607 EGVVNRKQA 615


>ref|YP_004359736.1| hypothetical protein bgla_1g10970 [Burkholderia gladioli BSR3]
 gb|AEA59780.1| hypothetical protein bgla_1g10970 [Burkholderia gladioli BSR3]
          Length = 1060

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 57/129 (44%), Gaps = 10/129 (7%)

Query: 9   ARGDTFDYRFTTAVAVPDALNKILAPSRAQHFWLGDTVSI--DARRVARRADHTADR-SR 65
           ARGD F+  F +     DAL  I A  RA   + G T+S+  D  + AR A  T  R + 
Sbjct: 485 ARGDEFNGVFDSVGTFWDALTTICAAGRAIPMYFGGTISVVRDEIKTARTAMFTQQRMAP 544

Query: 66  DRAGFDAGQFD-HARRAVVVEYVDESTWRPAQVQYPPDSDTVKSVNAEAKRVD--GIVNR 122
                D G +   +   V +EY+DESTW    V   P     +    + KR+   G   R
Sbjct: 545 GSLEIDYGFYSIDSPDYVTIEYMDESTWSWQTVSCIPAGSPAR----KEKRIQMVGPTKR 600

Query: 123 DQAFRECAF 131
            QAF E  +
Sbjct: 601 RQAFAEGIY 609


>ref|ZP_04578334.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gb|EEO29307.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 871

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 54/126 (42%), Gaps = 10/126 (7%)

Query: 9   ARGDTFDYRFTTAVAVPDALNKILAPSRAQHFWLGDTVSI--DARRVARRADHTADRSRD 66
            RGD  D RF T   V +AL  I    RA+ F  G  V I  D  +       T  R+  
Sbjct: 461 GRGDYIDIRFDTKTTVWEALTTIARAGRAKPFRQGGMVRIIRDQPQSVPSGMFTM-RNIV 519

Query: 67  RAGFDAGQF---DHARRAVVVEYVDESTWRPAQVQYP-PDSDTVKSVNAEAKRVDGIVNR 122
           +  F        +    AV +EY D   W+   V+   PDS   K V     ++ G+ NR
Sbjct: 520 KGSFKVQYLMPTEETADAVDIEYFDARIWKWKTVKAKMPDSIAEKPVTV---KLLGVTNR 576

Query: 123 DQAFRE 128
           DQA+RE
Sbjct: 577 DQAWRE 582


>ref|YP_001210242.1| BcepGomrgp22 [Burkholderia phage BcepGomr]
 gb|ABP63593.1| BcepGomrgp22 [Burkholderia phage BcepGomr]
          Length = 1236

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 58/135 (42%), Gaps = 12/135 (8%)

Query: 1   VSHAAGCDARGDTFDYRFTTAVAVPDALNKILAPSRAQHFWLGDTVSIDARRVARRADHT 60
           V  A   DARGD F+  F T     DAL  I+   RA   +      ID  R   ++  T
Sbjct: 469 VRLAGVWDARGDEFNGVFDTTGQFWDALTSIVRVGRAVPMYYAGL--IDFIRDEPKSIPT 526

Query: 61  A---DRSRDRAGFDAG-QFDHARRA--VVVEYVDESTWRPAQVQYP-PDSDTVKSVNAEA 113
           A    ++  +  F A  QF        V +EYVD  TW+   V    PDS   K+   E 
Sbjct: 527 AMFSPQNMVKNSFSATYQFAEVDTPDYVQIEYVDAKTWQTTVVDCALPDSIKTKAAKVEM 586

Query: 114 KRVDGIVNRDQAFRE 128
               GI N DQA+RE
Sbjct: 587 M---GITNHDQAWRE 598


>ref|YP_420886.1| hypothetical protein amb1523 [Magnetospirillum magneticum AMB-1]
 dbj|BAE50327.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 617

 Score = 38.5 bits (88), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)

Query: 5   AGCDARGDTFDYRFTTAVAVPDALNKILAPSRAQHFWLGDTV--------SIDARRVARR 56
           A  DARGDTF+  F +++   DA+ ++L   R   F  G  V         I A    RR
Sbjct: 316 ATWDARGDTFNGVFDSSLTAWDAVKRVLNVGRGAPFQQGGFVRYMRDEPQEIPAALFNRR 375

Query: 57  ADHTADRSRDRAGFDAGQFDHARRAVVVEYVDESTWRPAQVQYPPDSDTVKSVN------ 110
                  S +   +D    D+   AV VEY  E+TW+ A+V       +++ +       
Sbjct: 376 CIVRGSFSIE---YDMPS-DNTADAVTVEYFSEATWKIAEVTVAMRDGSIRELTPTELRD 431

Query: 111 ---AEAKRVD--GIVNRDQAFRECAF 131
              A+  R+   GI ++ QA RE  F
Sbjct: 432 SPPAKPARMQYFGITDKAQAEREACF 457