BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0064.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773695.1| transport protein [Bradyrhizobium japonicum USD... 476 e-132 ref|YP_001207814.1| DMT family permease [Bradyrhizobium sp. ORS ... 452 e-125 ref|YP_001237954.1| DMT family permease [Bradyrhizobium sp. BTAi... 446 e-123 ref|YP_533942.1| hypothetical protein RPC_4097 [Rhodopseudomonas... 406 e-111 ref|YP_783058.1| hypothetical protein RPE_4153 [Rhodopseudomonas... 390 e-106 >ref|NP_773695.1| transport protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52320.1| hypothetical transport protein [Bradyrhizobium japonicum USDA 110] Length = 310 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 247/310 (79%), Positives = 275/310 (88%), Gaps = 1/310 (0%) Query: 1 MSASDSTTSTPAAG-SWIANQPYLLLCITATCWAGNAIVGRLAAGHIPPVTLSFLRWSAA 59 MSA+ TTST +G +W+ANQPYLLL ITA CWAGNAIVGRLAAGHIPPVTLSFLRWS A Sbjct: 1 MSATGQTTSTETSGHNWVANQPYLLLSITALCWAGNAIVGRLAAGHIPPVTLSFLRWSFA 60 Query: 60 FLIILPFAWKHLVRDWPVIRNNLGIMVLMSITGISAFNTLQYWALEHTQALNTLLLQSAA 119 FL++LPFAWKHL +DWP IR LG+MV +SITGI AFNTLQYWALEHTQALNTLLLQSAA Sbjct: 61 FLLVLPFAWKHLAQDWPAIRGKLGLMVTLSITGIGAFNTLQYWALEHTQALNTLLLQSAA 120 Query: 120 PLVVALWSLILLGARLTLAQLFGVLLSLAGVLVILLHGDLTTLSRIEFNKGDLIFIVALV 179 PL+VALWSL +LG RLT AQ FGVLLS+ GVL ILLHGD TTLS IEFNKGDLIF++AL+ Sbjct: 121 PLLVALWSLAILGIRLTAAQAFGVLLSMCGVLTILLHGDFTTLSNIEFNKGDLIFLLALL 180 Query: 180 IFALYSVLTLKRPNIHGLSVAAFTFGCGALVLIPLYIWELGARPVMQLTINNLLSLFYVA 239 IFALYSVL+LKRP +HGLS AFTFG GA LIPL IWEL ARPVM+ NLL+LFYVA Sbjct: 181 IFALYSVLSLKRPAMHGLSFLAFTFGAGAACLIPLEIWELSARPVMKFDAPNLLTLFYVA 240 Query: 240 VFPSTLAYLCFNRGVQLIGANRAAPFFHMVPVFGTIMSIVFIGEHPQAFHFIGFALVLAG 299 VFPSTLAYLCFNRGV+LIGANRAAPFFH+VPVFG+IM++VF+GE PQAFHFIGFALVL+G Sbjct: 241 VFPSTLAYLCFNRGVRLIGANRAAPFFHVVPVFGSIMAMVFLGERPQAFHFIGFALVLSG 300 Query: 300 VFAASRKQSA 309 VFAASRKQ++ Sbjct: 301 VFAASRKQAS 310 >ref|YP_001207814.1| DMT family permease [Bradyrhizobium sp. ORS 278] emb|CAL79599.1| Putative transport protein; putative permease of the drug/metabolite transporter (DMT) superfamily [Bradyrhizobium sp. ORS 278] Length = 309 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/308 (71%), Positives = 254/308 (82%) Query: 1 MSASDSTTSTPAAGSWIANQPYLLLCITATCWAGNAIVGRLAAGHIPPVTLSFLRWSAAF 60 MSA+D T S A +W+ANQPY+LL ITA CWAGNAIVGRLAAGHIPPVTLSFLRWS AF Sbjct: 1 MSAADPTVSPAPARAWVANQPYVLLSITALCWAGNAIVGRLAAGHIPPVTLSFLRWSLAF 60 Query: 61 LIILPFAWKHLVRDWPVIRNNLGIMVLMSITGISAFNTLQYWALEHTQALNTLLLQSAAP 120 LIILP AWK L +DWP IR+ LGIMV +S+TGI AFNTLQYW+LE+TQALNTLLLQS P Sbjct: 61 LIILPLAWKQLRQDWPAIRSKLGIMVALSVTGIGAFNTLQYWSLEYTQALNTLLLQSGGP 120 Query: 121 LVVALWSLILLGARLTLAQLFGVLLSLAGVLVILLHGDLTTLSRIEFNKGDLIFIVALVI 180 L+VALWS++LL LT AQ G++LS+ GVL+IL G ++ I FNKGDLIF++A+ + Sbjct: 121 LIVALWSMLLLRVHLTFAQAVGIVLSMIGVLLILTRGHPAAIADISFNKGDLIFLLAMAV 180 Query: 181 FALYSVLTLKRPNIHGLSVAAFTFGCGALVLIPLYIWELGARPVMQLTINNLLSLFYVAV 240 F YSVLT+KRP IHGLS+ AFTFGCGA LIPL IWEL RPVM NLLSL YVA+ Sbjct: 181 FGFYSVLTIKRPQIHGLSMVAFTFGCGAASLIPLLIWELNTRPVMAFDTQNLLSLLYVAI 240 Query: 241 FPSTLAYLCFNRGVQLIGANRAAPFFHMVPVFGTIMSIVFIGEHPQAFHFIGFALVLAGV 300 FPST+AYLCFNRGV LIGANRAAPFFH+VPVFG+IM+ VF+GE PQ FH IGFALVLAGV Sbjct: 241 FPSTIAYLCFNRGVLLIGANRAAPFFHVVPVFGSIMAFVFLGEQPQLFHVIGFALVLAGV 300 Query: 301 FAASRKQS 308 +AASRKQ+ Sbjct: 301 YAASRKQA 308 >ref|YP_001237954.1| DMT family permease [Bradyrhizobium sp. BTAi1] gb|ABQ34048.1| putative permease of the drug/metabolite transporter (DMT) superfamily [Bradyrhizobium sp. BTAi1] Length = 309 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 219/308 (71%), Positives = 254/308 (82%) Query: 1 MSASDSTTSTPAAGSWIANQPYLLLCITATCWAGNAIVGRLAAGHIPPVTLSFLRWSAAF 60 MSA+D T S +WIANQPY+LL ITA CWAGNAIVGRLAAGHIPPVTLSFLRWS AF Sbjct: 1 MSAADPTASAAPKRAWIANQPYVLLSITALCWAGNAIVGRLAAGHIPPVTLSFLRWSLAF 60 Query: 61 LIILPFAWKHLVRDWPVIRNNLGIMVLMSITGISAFNTLQYWALEHTQALNTLLLQSAAP 120 L+ILP AWK L +DWP IR+ LGIM+ +S+TGI AFNTLQYW+LE+TQALNTLLLQS+ P Sbjct: 61 LLILPLAWKQLRQDWPAIRSRLGIMIALSLTGIGAFNTLQYWSLEYTQALNTLLLQSSGP 120 Query: 121 LVVALWSLILLGARLTLAQLFGVLLSLAGVLVILLHGDLTTLSRIEFNKGDLIFIVALVI 180 L+VA+WS++LL LT AQ G++LSLAGVL+IL G T L+ I FN+GDLIF++A+ I Sbjct: 121 LIVAVWSMLLLRVHLTAAQAIGIVLSLAGVLLILTRGHPTALASITFNRGDLIFLLAMAI 180 Query: 181 FALYSVLTLKRPNIHGLSVAAFTFGCGALVLIPLYIWELGARPVMQLTINNLLSLFYVAV 240 F YSVL+LKRP IHGLS+ AFTFGCGA LIPL +WEL ARPVM L NLLSL YVA+ Sbjct: 181 FGFYSVLSLKRPQIHGLSMVAFTFGCGAASLIPLLVWELHARPVMVLDAKNLLSLLYVAI 240 Query: 241 FPSTLAYLCFNRGVQLIGANRAAPFFHMVPVFGTIMSIVFIGEHPQAFHFIGFALVLAGV 300 FPST+AYLCFNRGV LIGANRAAPF H+VPVFG+IM+ VF+GE P+ FH I FALVL GV Sbjct: 241 FPSTIAYLCFNRGVLLIGANRAAPFLHVVPVFGSIMAFVFLGEQPEIFHVIAFALVLGGV 300 Query: 301 FAASRKQS 308 F ASRKQ+ Sbjct: 301 FIASRKQA 308 >ref|YP_533942.1| hypothetical protein RPC_4097 [Rhodopseudomonas palustris BisB18] gb|ABD89623.1| protein of unknown function DUF6, transmembrane [Rhodopseudomonas palustris BisB18] Length = 310 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 201/295 (68%), Positives = 238/295 (80%) Query: 15 SWIANQPYLLLCITATCWAGNAIVGRLAAGHIPPVTLSFLRWSAAFLIILPFAWKHLVRD 74 +W+++QPYLLL +T+ WAGNAIVGR AAGH PPVTLSFLRW+ AFL++LPFAW HL RD Sbjct: 14 AWLSDQPYLLLSLTSLFWAGNAIVGRAAAGHFPPVTLSFLRWAVAFLLVLPFAWPHLKRD 73 Query: 75 WPVIRNNLGIMVLMSITGISAFNTLQYWALEHTQALNTLLLQSAAPLVVALWSLILLGAR 134 W IR LG+M+ +S+ GIS FNTLQY ALE+T ALN LLLQS APL VA+WSLI+LG R Sbjct: 74 WHEIRRRLGVMIAISVAGISTFNTLQYTALEYTTALNALLLQSTAPLFVAIWSLIVLGIR 133 Query: 135 LTLAQLFGVLLSLAGVLVILLHGDLTTLSRIEFNKGDLIFIVALVIFALYSVLTLKRPNI 194 LTLAQ GVL+S+ GV VILLHGDL L+ I+ N+GDLIFI A+ IF LYS L+ KRP I Sbjct: 134 LTLAQALGVLVSMLGVAVILLHGDLGQLAHIDLNRGDLIFITAMAIFGLYSALSQKRPAI 193 Query: 195 HGLSVAAFTFGCGALVLIPLYIWELGARPVMQLTINNLLSLFYVAVFPSTLAYLCFNRGV 254 HGLS AFTFGCGAL L+PL I EL RP +LT+ N SL YVAVFPS LAYLC+NRG+ Sbjct: 194 HGLSFLAFTFGCGALGLVPLLIVELMLRPPPELTLGNFASLGYVAVFPSILAYLCYNRGI 253 Query: 255 QLIGANRAAPFFHMVPVFGTIMSIVFIGEHPQAFHFIGFALVLAGVFAASRKQSA 309 QLIGANRAAPFFH++PVFG+ M+I F+GE PQ +H G+ALVLAGV+ A+RKQ A Sbjct: 254 QLIGANRAAPFFHLIPVFGSAMAIGFLGERPQLYHAFGYALVLAGVYVAARKQKA 308 >ref|YP_783058.1| hypothetical protein RPE_4153 [Rhodopseudomonas palustris BisA53] gb|ABJ08078.1| protein of unknown function DUF6, transmembrane [Rhodopseudomonas palustris BisA53] Length = 310 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/307 (65%), Positives = 243/307 (79%), Gaps = 4/307 (1%) Query: 7 TTSTPAAG----SWIANQPYLLLCITATCWAGNAIVGRLAAGHIPPVTLSFLRWSAAFLI 62 TT+TPAA WI++QPYLLL +T+ WAGNAIVGR AAGH PPVTLSFLRW+ AF I Sbjct: 2 TTTTPAAPPHRFHWISDQPYLLLSLTSLFWAGNAIVGRAAAGHFPPVTLSFLRWACAFAI 61 Query: 63 ILPFAWKHLVRDWPVIRNNLGIMVLMSITGISAFNTLQYWALEHTQALNTLLLQSAAPLV 122 +LPFAW+HL RDW IR +L +MV +SI GIS FNTLQY ALE T ALN LLLQS PL Sbjct: 62 VLPFAWRHLKRDWKQIRKHLVLMVAISIIGISTFNTLQYTALESTTALNILLLQSTGPLF 121 Query: 123 VALWSLILLGARLTLAQLFGVLLSLAGVLVILLHGDLTTLSRIEFNKGDLIFIVALVIFA 182 VA+WSLI+LG RLTL Q G+L+S+AGV+VI++HGDLT L+ I+ N+GDLIF+ AL IF Sbjct: 122 VAIWSLIVLGVRLTLTQALGILVSMAGVVVIIMHGDLTRLAGIDLNRGDLIFLSALAIFG 181 Query: 183 LYSVLTLKRPNIHGLSVAAFTFGCGALVLIPLYIWELGARPVMQLTINNLLSLFYVAVFP 242 LY+ LT +RP++H LS AFTFGCGAL LIPL IWEL ARPV + + N+ SL YVA+FP Sbjct: 182 LYTALTQRRPSMHALSFLAFTFGCGALFLIPLLIWELQARPVAAIDLANVASLAYVAIFP 241 Query: 243 STLAYLCFNRGVQLIGANRAAPFFHMVPVFGTIMSIVFIGEHPQAFHFIGFALVLAGVFA 302 S LAYLC+NRGV L+GANR+APFFH++PVFG+ M+IVF+GE PQ FH G+ LVL GV+ Sbjct: 242 SILAYLCYNRGVALVGANRSAPFFHLIPVFGSAMAIVFLGERPQLFHAYGYVLVLVGVYV 301 Query: 303 ASRKQSA 309 A+RK A Sbjct: 302 AARKPKA 308